1XRHA

Crystal structure of ureidoglycolate dehydrogenase from escherichia coli
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
343
structure length
343
Chain Sequence
SSKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Ureidoglycolate Dehydrogenase
publication title Crystal Structure of Ureidoglycolate Dehydrogenase from Escherichia Coli
rcsb
source organism Escherichia coli
total genus 95
structure length 343
sequence length 343
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 1.1.1.350: Ureidoglycolate dehydrogenase (NAD(+)).
pdb deposition date 2004-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02615 Ldh_2 Malate/L-lactate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1530.10 Mainly Alpha Orthogonal Bundle Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 1xrhA01
3.30.1370.60 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Hypothetical oxidoreductase yiak; domain 2 1xrhA02
1WTJA 4FJUA 3UOEA 1V9NA 2X06A 2G8YA 1Z2IA 1XRHA 2CWFA 2CWHA 4FJSA 3I0PA 1VBIA 1NXUA 1X0AA 4H8AA 1S20A
chains in the Genus database with same CATH superfamily
1J5EH 2OPUA 3T1YH 4GKJH 2FPHX 1N33H 3QD7X 4B8TA 2LRRA 1HNZH 2CTJA 1X0AA 2K1HA 1XMOH 1XMQH 1I94H 1ZTGA 1V9NA 4DUYH 4NXMH 4KHPH 4JI2H 1Z2IA 4OD6A 1F0XA 1MSZA 2FMRA 2LTLA 5A2QW 4LF8H 1ZZKA 4JVHA 2CTEA 4FJSA 4DV5H 2UXBH 2A1SA 4DV4H 3GKUA 1DT4A 1WE8A 4LF7H 4JI1H 4NXNH 2OPVA 4DR5H 1V8CA 3JAMW 3FAUA 1IBKH 4DR4H 4AQYH 1K1GA 4DV2H 4WANA 4G08A 2UUAH 4B3TH 4PDBA 1WTJA 1HR0H 1N32H 2BL5A 3L7ZC 3RF2A 4LF9H 2CPQA 2PT7G 1EC6A 2HH2A 2LTMA 3SB1A 4OX9H 4AM3A 2LF0A 4YY3H 4NBQA 4LF4H 1FJGH 1X4NA 3AEVB 4JI4H 3J80W 4WALA 4LIJA 4JI6H 4LFCH 2M8WA 2UUBH 2UXDH 4JI0H 5IWAH 4B3MH 4AIMA 2D9IA 4DV0H 4JI8H 1VBIA 2O4CA 4EC5A 3VKEA 4JI7H 2JEAI 3NCVA 2Y3MA 3UOEA 4DR1H 2Z0SA 1XNQH 3GR5A 1IBLH 2HHHH 2JA9A 2BA0A 1XNRH 2UXCH 3I0PA 1I6UA 2FFMA 1WHRA 4BA1I 5DT9A 2ANRA 1N36H 2P2RA 2PQUA 2CTFA 2JE6I 1VIGA 4LF6H 4X66H 2CTMA 1X9ZA 3U1KA 4B8CD 3OTOH 4DV3H 4JI5H 1S20A 4GKKH 1KHMA 3OSSD 3J81W 1FKAH 4E9JA 4B3SH 1TUAA 2CWHA 1XRHA 1X4MA 2DGRA 4DR7H 4OCHA 1J4WA 2QNDA 2VQFH 1ODHA 3T1HH 4YHHH 2CWFA 2CTKA 1ZZIA 1N34H 2UUCH 4JVYA 2CTLA 1J5KA 4QMFB 4JYAH 2E5LH 5IT9W 2M6QA 4FJUA 2E3UA 4DV7H 4DR2H 2VQEH 2ANNA 2HH3A 2VKCA 1UG8A 4BA2I 3V69A 1NXUA 1WVNA 5C0XG 2JVZA 1SEIA 4LF5H 1VIHA 2YQRA 3OETA 4IFDG 5JEAG 2F4VH 3KDGA 4NZRM 2X06A 4DV6H 4X65H 2ZM6H 4OO1G 1DTJA 5LMNH 2AXYA 4JI3H 2CPMA 1HNWH 5LMUH 4H8AA 1AN7A 3GABA 5LL6b 3J7AK 3KDKA 5FLXW 4LFAH 2G8YA 4DUZH 1ZZJA 1IBMH 2NN6G 4DR3H 5K36G 2JEBI 4JV5H 4X64H 2MJHA 4K0KH 1PQXA 4LFBH 3EZJA 2PY9A 4X62H 4DV1H 5BR8H 1S03G 2ZQEA 2UU9H 4NZTM 4B3RH 2JZXA 1HNXH 4DR6H
chains in the Genus database with same CATH topology
1WTJA 4FJUA 3UOEA 1V9NA 2X06A 2G8YA 1Z2IA 1XRHA 2CWFA 2CWHA 4FJSA 3I0PA 1VBIA 1NXUA 1X0AA 4H8AA 1S20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WTJ A;  4FJU A;  3UOE A;  1V9N A;  2X06 A;  2G8Y A;  1Z2I A;  1XRH A;  2CWF A;  2CWH A;  4FJS A;  3I0P A;  1VBI A;  1NXU A;  1X0A A;  4H8A A;  1S20 A; 
#chains in the Genus database with same CATH topology
 1J5E H;  2OPU A;  3T1Y H;  4GKJ H;  2FPH X;  1N33 H;  3QD7 X;  4B8T A;  2LRR A;  1HNZ H;  2CTJ A;  1X0A A;  2K1H A;  1XMO H;  1XMQ H;  1I94 H;  1ZTG A;  1V9N A;  4DUY H;  4NXM H;  4KHP H;  4JI2 H;  1Z2I A;  4OD6 A;  1F0X A;  1MSZ A;  2FMR A;  2LTL A;  5A2Q W;  4LF8 H;  1ZZK A;  4JVH A;  2CTE A;  4FJS A;  4DV5 H;  2UXB H;  2A1S A;  4DV4 H;  3GKU A;  1DT4 A;  1WE8 A;  4LF7 H;  4JI1 H;  4NXN H;  2OPV A;  4DR5 H;  1V8C A;  3JAM W;  3FAU A;  1IBK H;  4DR4 H;  4AQY H;  1K1G A;  4DV2 H;  4WAN A;  4G08 A;  2UUA H;  4B3T H;  4PDB A;  1WTJ A;  1HR0 H;  1N32 H;  2BL5 A;  3L7Z C;  3RF2 A;  4LF9 H;  2CPQ A;  2PT7 G;  1EC6 A;  2HH2 A;  2LTM A;  3SB1 A;  4OX9 H;  4AM3 A;  2LF0 A;  4YY3 H;  4NBQ A;  4LF4 H;  1FJG H;  1X4N A;  3AEV B;  4JI4 H;  3J80 W;  4WAL A;  4LIJ A;  4JI6 H;  4LFC H;  2M8W A;  2UUB H;  2UXD H;  4JI0 H;  5IWA H;  4B3M H;  4AIM A;  2D9I A;  4DV0 H;  4JI8 H;  1VBI A;  2O4C A;  4EC5 A;  3VKE A;  4JI7 H;  2JEA I;  3NCV A;  2Y3M A;  3UOE A;  4DR1 H;  2Z0S A;  1XNQ H;  3GR5 A;  1IBL H;  2HHH H;  2JA9 A;  2BA0 A;  1XNR H;  2UXC H;  3I0P A;  1I6U A;  2FFM A;  1WHR A;  4BA1 I;  5DT9 A;  2ANR A;  1N36 H;  2P2R A;  2PQU A;  2CTF A;  2JE6 I;  1VIG A;  4LF6 H;  4X66 H;  2CTM A;  1X9Z A;  3U1K A;  4B8C D;  3OTO H;  4DV3 H;  4JI5 H;  1S20 A;  4GKK H;  1KHM A;  3OSS D;  3J81 W;  1FKA H;  4E9J A;  4B3S H;  1TUA A;  2CWH A;  1XRH A;  1X4M A;  2DGR A;  4DR7 H;  4OCH A;  1J4W A;  2QND A;  2VQF H;  1ODH A;  3T1H H;  4YHH H;  2CWF A;  2CTK A;  1ZZI A;  1N34 H;  2UUC H;  4JVY A;  2CTL A;  1J5K A;  4QMF B;  4JYA H;  2E5L H;  5IT9 W;  2M6Q A;  4FJU A;  2E3U A;  4DV7 H;  4DR2 H;  2VQE H;  2ANN A;  2HH3 A;  2VKC A;  1UG8 A;  4BA2 I;  3V69 A;  1NXU A;  1WVN A;  5C0X G;  2JVZ A;  1SEI A;  4LF5 H;  1VIH A;  2YQR A;  3OET A;  4IFD G;  5JEA G;  2F4V H;  3KDG A;  4NZR M;  2X06 A;  4DV6 H;  4X65 H;  2ZM6 H;  4OO1 G;  1DTJ A;  5LMN H;  2AXY A;  4JI3 H;  2CPM A;  1HNW H;  5LMU H;  4H8A A;  1AN7 A;  3GAB A;  5LL6 b;  3J7A K;  3KDK A;  5FLX W;  4LFA H;  2G8Y A;  4DUZ H;  1ZZJ A;  1IBM H;  2NN6 G;  4DR3 H;  5K36 G;  2JEB I;  4JV5 H;  4X64 H;  2MJH A;  4K0K H;  1PQX A;  4LFB H;  3EZJ A;  2PY9 A;  4X62 H;  4DV1 H;  5BR8 H;  1S03 G;  2ZQE A;  2UU9 H;  4NZT M;  4B3R H;  2JZX A;  1HNX H;  4DR6 H; 
#chains in the Genus database with same CATH homology
 1WTJ A;  4FJU A;  3UOE A;  1V9N A;  2X06 A;  2G8Y A;  1Z2I A;  1XRH A;  2CWF A;  2CWH A;  4FJS A;  3I0P A;  1VBI A;  1NXU A;  1X0A A;  4H8A A;  1S20 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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