2LF0A

Solution structure of sf3636, a two-domain unknown function protein from shigella flexneri 2a, determined by joint refinement of nmr, residual dipolar couplings and small-angle x-ray scattering, nesg target sfr339/ocsp target sf3636
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
120
structure length
120
Chain Sequence
MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLEEMTGFSKTTF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized protein yibL
publication title Solution structure of sf3636, a two-domain unknown function protein from Shigella flexneri 2a, determined by joint refinement of NMR, residual dipolar couplings and small-angle X-ray scattering
rcsb
source organism Shigella flexneri
total genus 31
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2011-06-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.150 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 2lf0A02
4.10.860.10 Few Secondary Structures Irregular DNA Excision Repair, Uvrb; Chain A UVR domain 2lf0A01
2LF0A 3PXGA 2A26A 4U1CA 1QOJA 1E52A 1YSMA
chains in the Genus database with same CATH superfamily
3V1CA 2E3UA 3GABA 4DV0H 2F4VH 4U1CA 2JE6I 2JEAI 4DR1H 4NZTM 5K36G 3J7AK 1N33H 2Y3MA 4DV4H 1YZMA 3GKUA 4AM3A 3V1FA 1VIGA 2LRRA 2CTJA 4BA1I 2ANNA 1HNWH 4DV2H 4X66H 4DV1H 4JI5H 3OTOH 4DR7H 3T1HH 2LF0A 2LTMA 2BA0A 3QD7X 1VBIA 1KHMA 2E5LH 1N34H 1V9NA 1X4NA 2P2RA 1SEIA 1ZTGA 4LF5H 2JA9A 1VIHA 4LFCH 2JZXA 1AN7A 3J80W 4YHHH 2CWHA 4DV6H 1QOJA 3KDGA 3OSSD 1J5KA 2OPVA 2JVZA 2FFMA 2CTKA 4B3TH 4JYAH 1MSZA 2CTMA 2HHHH 1WTJA 2A1SA 4JV5H 4IFDG 2ZM6H 3NCVA 2ZQEA 5JEAG 2O4CA 1ZZJA 1HNZH 4JI6H 1Z0KB 4JI3H 2UXDH 2A26A 5LL6b 4LF7H 4H8AA 4B8CD 2CPMA 2YQRA 2FPHX 4FJUA 3KDKA 2M8WA 3U1KA 2D9IA 5LMNH 4YY3H 2FMRA 1DT4A 1PQXA 2K1HA 4WALA 4X62H 3V1EA 2VQEH 4OX9H 3T1YH 1UG8A 1XNQH 1V8CA 2UXCH 1X4MA 2UUAH 3V1AA 3PXGA 2DGRA 2CTEA 1IBLH 4LF4H 4OD6A 4NZRM 2LTLA 2NN6G 4G08A 2OPUA 5C0XG 1S03G 3I0PA 4B3MH 1WE8A 4NBQA 4DR5H 1S20A 4LFBH 4DV5H 5LMUH 4JVYA 3AEVB 1I94H 1WVNA 2JEBI 1WHRA 2CTLA 3OETA 4DV3H 2CTFA 3FAUA 4X65H 1ODHA 2CWFA 2Z0SA 3J81W 2UUCH 5BR8H 4GKKH 1XMQH 1YSMA 2UXBH 4LF6H 4JI1H 4B3SH 3V69A 1K1GA 2MJHA 4JI8H 4KHPH 3L7ZC 4DV7H 2VKCA 2BL5A 3SB1A 1X9ZA 1ZZIA 1J4WA 1XNRH 1I6UA 4OCHA 4LF9H 1HNXH 3VKEA 3JAMW 4AQYH 3V1DA 1N36H 1X0AA 3UOEA 4K0KH 1ZZKA 1IBKH 4LF8H 1XRHA 2G8YA 2ANRA 1TUAA 4EC5A 4DR3H 1N32H 2UU9H 3GR5A 3V1BA 1Z0JB 4JI7H 4E9JA 4DUZH 4DR6H 4B3RH 4PDBA 4B8TA 2X06A 4BA2I 4WANA 5IT9W 4DUYH 1HR0H 1FJGH 3EZJA 4OO1G 4AIMA 1J5EH 4DR2H 4JI2H 2UUBH 2HH3A 4NXMH 1EC6A 2HH2A 3DKQA 4JI0H 2M6QA 2CPQA 1DTJA 5DT9A 5FLXW 2PQUA 4JVHA 2PT7G 4X64H 4GKJH 1FKAH 1Z2IA 4QMFB 3RF2A 4NXNH 2AXYA 1E52A 2PY9A 1XMOH 4LFAH 2QNDA 1IBMH 1NXUA 4LIJA 1F0XA 4FJSA 4DR4H 5IWAH 2VQFH 5A2QW 4JI4H
chains in the Genus database with same CATH topology
3GABA 4DV0H 2F4VH 4U1CA 4DR1H 4NZTM 3J7AK 1N33H 2Y3MA 4DV4H 1HNWH 4DV2H 4X66H 4DV1H 4JI5H 3OTOH 4DR7H 3T1HH 2LF0A 3QD7X 2E5LH 1N34H 4LF5H 1SEIA 4LFCH 1AN7A 3J80W 4YHHH 4DV6H 1QOJA 3OSSD 3KDGA 4B3TH 4JYAH 2HHHH 4JV5H 2ZM6H 3NCVA 2ZQEA 2O4CA 1HNZH 4JI6H 4JI3H 2UXDH 2A26A 5LL6b 4LF7H 4B8CD 2FPHX 3KDKA 2D9IA 5LMNH 4YY3H 4X62H 2VQEH 4OX9H 3T1YH 1XNQH 2UXCH 2UUAH 3PXGA 1IBLH 4LF4H 4OD6A 4NZRM 4G08A 1S03G 4B3MH 4DR5H 4LFBH 4DV5H 5LMUH 1I94H 3OETA 4DV3H 3FAUA 4X65H 1ODHA 3J81W 2UUCH 5BR8H 4GKKH 1XMQH 1YSMA 2UXBH 4LF6H 4JI1H 4B3SH 4JI8H 4KHPH 4DV7H 2VKCA 3SB1A 1X9ZA 1I6UA 1XNRH 4OCHA 4LF9H 1HNXH 3JAMW 4AQYH 1N36H 4K0KH 1IBKH 4LF8H 4DR3H 4EC5A 1N32H 2UU9H 3GR5A 4JI7H 4E9JA 4DUZH 4DR6H 4B3RH 4PDBA 5IT9W 4DUYH 1HR0H 1FJGH 3EZJA 1J5EH 4DR2H 4JI2H 2UUBH 4NXMH 4JI0H 5DT9A 5FLXW 2PT7G 4X64H 4GKJH 1FKAH 3RF2A 4NXNH 1E52A 1XMOH 4LFAH 1IBMH 1F0XA 4DR4H 5IWAH 2VQFH 5A2QW 4JI4H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LF0 A;  3PXG A;  2A26 A;  4U1C A;  1QOJ A;  1E52 A;  1YSM A; 
#chains in the Genus database with same CATH topology
 3V1C A;  2E3U A;  3GAB A;  4DV0 H;  2F4V H;  4U1C A;  2JE6 I;  2JEA I;  4DR1 H;  4NZT M;  5K36 G;  3J7A K;  1N33 H;  2Y3M A;  4DV4 H;  1YZM A;  3GKU A;  4AM3 A;  3V1F A;  1VIG A;  2LRR A;  2CTJ A;  4BA1 I;  2ANN A;  1HNW H;  4DV2 H;  4X66 H;  4DV1 H;  4JI5 H;  3OTO H;  4DR7 H;  3T1H H;  2LF0 A;  2LTM A;  2BA0 A;  3QD7 X;  1VBI A;  1KHM A;  2E5L H;  1N34 H;  1V9N A;  1X4N A;  2P2R A;  1SEI A;  1ZTG A;  4LF5 H;  2JA9 A;  1VIH A;  4LFC H;  2JZX A;  1AN7 A;  3J80 W;  4YHH H;  2CWH A;  4DV6 H;  1QOJ A;  3KDG A;  3OSS D;  1J5K A;  2OPV A;  2JVZ A;  2FFM A;  2CTK A;  4B3T H;  4JYA H;  1MSZ A;  2CTM A;  2HHH H;  1WTJ A;  2A1S A;  4JV5 H;  4IFD G;  2ZM6 H;  3NCV A;  2ZQE A;  5JEA G;  2O4C A;  1ZZJ A;  1HNZ H;  4JI6 H;  1Z0K B;  4JI3 H;  2UXD H;  2A26 A;  5LL6 b;  4LF7 H;  4H8A A;  4B8C D;  2CPM A;  2YQR A;  2FPH X;  4FJU A;  3KDK A;  2M8W A;  3U1K A;  2D9I A;  5LMN H;  4YY3 H;  2FMR A;  1DT4 A;  1PQX A;  2K1H A;  4WAL A;  4X62 H;  3V1E A;  2VQE H;  4OX9 H;  3T1Y H;  1UG8 A;  1XNQ H;  1V8C A;  2UXC H;  1X4M A;  2UUA H;  3V1A A;  3PXG A;  2DGR A;  2CTE A;  1IBL H;  4LF4 H;  4OD6 A;  4NZR M;  2LTL A;  2NN6 G;  4G08 A;  2OPU A;  5C0X G;  1S03 G;  3I0P A;  4B3M H;  1WE8 A;  4NBQ A;  4DR5 H;  1S20 A;  4LFB H;  4DV5 H;  5LMU H;  4JVY A;  3AEV B;  1I94 H;  1WVN A;  2JEB I;  1WHR A;  2CTL A;  3OET A;  4DV3 H;  2CTF A;  3FAU A;  4X65 H;  1ODH A;  2CWF A;  2Z0S A;  3J81 W;  2UUC H;  5BR8 H;  4GKK H;  1XMQ H;  1YSM A;  2UXB H;  4LF6 H;  4JI1 H;  4B3S H;  3V69 A;  1K1G A;  2MJH A;  4JI8 H;  4KHP H;  3L7Z C;  4DV7 H;  2VKC A;  2BL5 A;  3SB1 A;  1X9Z A;  1ZZI A;  1J4W A;  1XNR H;  1I6U A;  4OCH A;  4LF9 H;  1HNX H;  3VKE A;  3JAM W;  4AQY H;  3V1D A;  1N36 H;  1X0A A;  3UOE A;  4K0K H;  1ZZK A;  1IBK H;  4LF8 H;  1XRH A;  2G8Y A;  2ANR A;  1TUA A;  4EC5 A;  4DR3 H;  1N32 H;  2UU9 H;  3GR5 A;  3V1B A;  1Z0J B;  4JI7 H;  4E9J A;  4DUZ H;  4DR6 H;  4B3R H;  4PDB A;  4B8T A;  2X06 A;  4BA2 I;  4WAN A;  5IT9 W;  4DUY H;  1HR0 H;  1FJG H;  3EZJ A;  4OO1 G;  4AIM A;  1J5E H;  4DR2 H;  4JI2 H;  2UUB H;  2HH3 A;  4NXM H;  1EC6 A;  2HH2 A;  3DKQ A;  4JI0 H;  2M6Q A;  2CPQ A;  1DTJ A;  5DT9 A;  5FLX W;  2PQU A;  4JVH A;  2PT7 G;  4X64 H;  4GKJ H;  1FKA H;  1Z2I A;  4QMF B;  3RF2 A;  4NXN H;  2AXY A;  1E52 A;  2PY9 A;  1XMO H;  4LFA H;  2QND A;  1IBM H;  1NXU A;  4LIJ A;  1F0X A;  4FJS A;  4DR4 H;  5IWA H;  2VQF H;  5A2Q W;  4JI4 H; 
#chains in the Genus database with same CATH homology
 3GAB A;  4DV0 H;  2F4V H;  4U1C A;  4DR1 H;  4NZT M;  3J7A K;  1N33 H;  2Y3M A;  4DV4 H;  1HNW H;  4DV2 H;  4X66 H;  4DV1 H;  4JI5 H;  3OTO H;  4DR7 H;  3T1H H;  2LF0 A;  3QD7 X;  2E5L H;  1N34 H;  4LF5 H;  1SEI A;  4LFC H;  1AN7 A;  3J80 W;  4YHH H;  4DV6 H;  1QOJ A;  3OSS D;  3KDG A;  4B3T H;  4JYA H;  2HHH H;  4JV5 H;  2ZM6 H;  3NCV A;  2ZQE A;  2O4C A;  1HNZ H;  4JI6 H;  4JI3 H;  2UXD H;  2A26 A;  5LL6 b;  4LF7 H;  4B8C D;  2FPH X;  3KDK A;  2D9I A;  5LMN H;  4YY3 H;  4X62 H;  2VQE H;  4OX9 H;  3T1Y H;  1XNQ H;  2UXC H;  2UUA H;  3PXG A;  1IBL H;  4LF4 H;  4OD6 A;  4NZR M;  4G08 A;  1S03 G;  4B3M H;  4DR5 H;  4LFB H;  4DV5 H;  5LMU H;  1I94 H;  3OET A;  4DV3 H;  3FAU A;  4X65 H;  1ODH A;  3J81 W;  2UUC H;  5BR8 H;  4GKK H;  1XMQ H;  1YSM A;  2UXB H;  4LF6 H;  4JI1 H;  4B3S H;  4JI8 H;  4KHP H;  4DV7 H;  2VKC A;  3SB1 A;  1X9Z A;  1I6U A;  1XNR H;  4OCH A;  4LF9 H;  1HNX H;  3JAM W;  4AQY H;  1N36 H;  4K0K H;  1IBK H;  4LF8 H;  4DR3 H;  4EC5 A;  1N32 H;  2UU9 H;  3GR5 A;  4JI7 H;  4E9J A;  4DUZ H;  4DR6 H;  4B3R H;  4PDB A;  5IT9 W;  4DUY H;  1HR0 H;  1FJG H;  3EZJ A;  1J5E H;  4DR2 H;  4JI2 H;  2UUB H;  4NXM H;  4JI0 H;  5DT9 A;  5FLX W;  2PT7 G;  4X64 H;  4GKJ H;  1FKA H;  3RF2 A;  4NXN H;  1E52 A;  1XMO H;  4LFA H;  1IBM H;  1F0X A;  4DR4 H;  5IWA H;  2VQF H;  5A2Q W;  4JI4 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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