4JVHA

Structure of the star domain of quaking protein in complex with rna
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
193
structure length
176
Chain Sequence
KPTPDYLMQLMNDKKLMSNHLERLLDEEISRVRKDMYNDTSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords Protein quaking
publication title Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites.
pubmed doi rcsb
source organism Homo sapiens
total genus 40
structure length 176
sequence length 193
ec nomenclature
pdb deposition date 2013-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
A PF16544 STAR_dimer Homodimerisation region of STAR domain protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4jvhA00
2NN6G 2JA9A 1J5KA 2CPQA 4WANA 2JEAI 4QMFB 4BA2I 1X4NA 2HH3A 4AM3A 3VKEA 4LIJA 2FMRA 5K36G 4JVHA 2CTLA 1ZZJA 2BA0A 3AEVB 2OPVA 2AXYA 3V69A 4AIMA 1ZTGA 4NBQA 1KHMA 1ZZKA 2CTFA 2YQRA 2CTKA 2ANNA 5C0XG 2HH2A 2QNDA 3L7ZC 1J4WA 1VIHA 3U1KA 2ANRA 4OO1G 2JE6I 1WE8A 2E3UA 4JVYA 2P2RA 2OPUA 4WALA 2JVZA 2JZXA 2JEBI 4B8TA 2PQUA 4IFDG 1EC6A 2DGRA 1TUAA 1DT4A 2Z0SA 1X4MA 5JEAG 1WVNA 2PY9A 2CTMA 4BA1I 1ZZIA 1VIGA 2MJHA 2BL5A 2CTJA 2CTEA 1K1GA 1DTJA
chains in the Genus database with same CATH superfamily
3GR5A 2G8YA 2LTLA 2HHHH 4BA2I 4K0KH 1X4NA 4GKJH 3J81W 4LFAH 3VKEA 4GKKH 2FMRA 4X65H 4DV7H 4B3SH 1ZZJA 2LF0A 4LF6H 1I6UA 1UG8A 2Y3MA 3QD7X 4E9JA 1S20A 4JI3H 2CWFA 2CTFA 4OCHA 4NZTM 2YQRA 4LFBH 2UUBH 1N36H 2D9IA 4X62H 1J4WA 1XNQH 2ANRA 4OO1G 4JI7H 1IBLH 1N32H 2M6QA 3EZJA 2JZXA 4B8TA 5LL6b 4DR3H 4JI5H 2CTMA 4BA1I 1ZZIA 3I0PA 2CTJA 3SB1A 5A2QW 4WANA 2O4CA 3KDGA 3RF2A 5LMUH 2CWHA 2UXBH 4LIJA 4OD6A 4JI0H 4JVHA 4JI2H 4KHPH 1HNXH 3UOEA 2VQFH 2UXCH 4H8AA 1NXUA 2CTKA 4B3MH 2ZQEA 2M8WA 4JV5H 2UUCH 2QNDA 3U1KA 1VBIA 4NXNH 3OTOH 1WE8A 4IFDG 1X9ZA 1N34H 3OSSD 1TUAA 1J5EH 1WVNA 4DR1H 1VIGA 3NCVA 2BL5A 4FJUA 4LF5H 2E5LH 4DR5H 2NN6G 3JAMW 4YHHH 1J5KA 4JI1H 1PQXA 4JI6H 1MSZA 4EC5A 2JEAI 4QMFB 2LTMA 1SEIA 3T1HH 2HH3A 3J7AK 4B3TH 2CTLA 4B3RH 2BA0A 2PT7G 4DV2H 4DV0H 3AEVB 5LMNH 4DUYH 2AXYA 2UXDH 4AIMA 2F4VH 3KDKA 2X06A 4DR2H 1ZTGA 1ZZKA 1FJGH 1HR0H 5BR8H 3T1YH 1F0XA 4YY3H 1FKAH 1IBMH 5IT9W 5C0XG 5DT9A 4X64H 1XMOH 1VIHA 4NXMH 2FFMA 2JE6I 2E3UA 2JEBI 1EC6A 1N33H 2PY9A 4OX9H 5JEAG 1X4MA 3GABA 4DV3H 1HNZH 4B8CD 2CPMA 1IBKH 1Z2IA 2VKCA 1DTJA 1WHRA 4FJSA 4DUZH 2JA9A 4X66H 2CPQA 1ODHA 5IWAH 4LFCH 4DV5H 4LF4H 4DR7H 4AM3A 5K36G 4LF8H 1XMQH 4JI8H 2A1SA 4PDBA 4DV4H 2VQEH 4AQYH 3V69A 4LF9H 2UU9H 1HNWH 4NBQA 1WTJA 1KHMA 4DR6H 4JI4H 4DR4H 4G08A 3OETA 1XNRH 2UUAH 4JYAH 2FPHX 2ANNA 5FLXW 1XRHA 4LF7H 2HH2A 3L7ZC 2LRRA 1S03G 3GKUA 1X0AA 4JVYA 3FAUA 2P2RA 2OPUA 4WALA 1V9NA 2JVZA 4NZRM 3J80W 2PQUA 2ZM6H 2DGRA 1DT4A 1AN7A 2K1HA 2Z0SA 4DV1H 4DV6H 1I94H 1V8CA 2MJHA 2OPVA 2CTEA 1K1GA
chains in the Genus database with same CATH topology
2NN6G 2JA9A 1J5KA 2CPQA 4WANA 2JEAI 4QMFB 4BA2I 1X4NA 2HH3A 4AM3A 3VKEA 4LIJA 2FMRA 5K36G 4JVHA 2CTLA 1ZZJA 2BA0A 3AEVB 2OPVA 2AXYA 3V69A 4AIMA 1ZTGA 4NBQA 1KHMA 1ZZKA 2CTFA 2YQRA 2CTKA 2ANNA 5C0XG 2HH2A 2QNDA 3L7ZC 1J4WA 1VIHA 3U1KA 2ANRA 4OO1G 2JE6I 1WE8A 2E3UA 4JVYA 2P2RA 2OPUA 4WALA 2JVZA 2JZXA 2JEBI 4B8TA 2PQUA 4IFDG 1EC6A 2DGRA 1TUAA 1DT4A 2Z0SA 1X4MA 5JEAG 1WVNA 2PY9A 2CTMA 4BA1I 1ZZIA 1VIGA 2MJHA 2BL5A 2CTJA 2CTEA 1K1GA 1DTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NN6 G;  2JA9 A;  1J5K A;  2CPQ A;  4WAN A;  2JEA I;  4QMF B;  4BA2 I;  1X4N A;  2HH3 A;  4AM3 A;  3VKE A;  4LIJ A;  2FMR A;  5K36 G;  4JVH A;  2CTL A;  1ZZJ A;  2BA0 A;  3AEV B;  2OPV A;  2AXY A;  3V69 A;  4AIM A;  1ZTG A;  4NBQ A;  1KHM A;  1ZZK A;  2CTF A;  2YQR A;  2CTK A;  2ANN A;  5C0X G;  2HH2 A;  2QND A;  3L7Z C;  1J4W A;  1VIH A;  3U1K A;  2ANR A;  4OO1 G;  2JE6 I;  1WE8 A;  2E3U A;  4JVY A;  2P2R A;  2OPU A;  4WAL A;  2JVZ A;  2JZX A;  2JEB I;  4B8T A;  2PQU A;  4IFD G;  1EC6 A;  2DGR A;  1TUA A;  1DT4 A;  2Z0S A;  1X4M A;  5JEA G;  1WVN A;  2PY9 A;  2CTM A;  4BA1 I;  1ZZI A;  1VIG A;  2MJH A;  2BL5 A;  2CTJ A;  2CTE A;  1K1G A;  1DTJ A; 
#chains in the Genus database with same CATH topology
 3GR5 A;  2G8Y A;  2LTL A;  2HHH H;  4BA2 I;  4K0K H;  1X4N A;  4GKJ H;  3J81 W;  4LFA H;  3VKE A;  4GKK H;  2FMR A;  4X65 H;  4DV7 H;  4B3S H;  1ZZJ A;  2LF0 A;  4LF6 H;  1I6U A;  1UG8 A;  2Y3M A;  3QD7 X;  4E9J A;  1S20 A;  4JI3 H;  2CWF A;  2CTF A;  4OCH A;  4NZT M;  2YQR A;  4LFB H;  2UUB H;  1N36 H;  2D9I A;  4X62 H;  1J4W A;  1XNQ H;  2ANR A;  4OO1 G;  4JI7 H;  1IBL H;  1N32 H;  2M6Q A;  3EZJ A;  2JZX A;  4B8T A;  5LL6 b;  4DR3 H;  4JI5 H;  2CTM A;  4BA1 I;  1ZZI A;  3I0P A;  2CTJ A;  3SB1 A;  5A2Q W;  4WAN A;  2O4C A;  3KDG A;  3RF2 A;  5LMU H;  2CWH A;  2UXB H;  4LIJ A;  4OD6 A;  4JI0 H;  4JVH A;  4JI2 H;  4KHP H;  1HNX H;  3UOE A;  2VQF H;  2UXC H;  4H8A A;  1NXU A;  2CTK A;  4B3M H;  2ZQE A;  2M8W A;  4JV5 H;  2UUC H;  2QND A;  3U1K A;  1VBI A;  4NXN H;  3OTO H;  1WE8 A;  4IFD G;  1X9Z A;  1N34 H;  3OSS D;  1TUA A;  1J5E H;  1WVN A;  4DR1 H;  1VIG A;  3NCV A;  2BL5 A;  4FJU A;  4LF5 H;  2E5L H;  4DR5 H;  2NN6 G;  3JAM W;  4YHH H;  1J5K A;  4JI1 H;  1PQX A;  4JI6 H;  1MSZ A;  4EC5 A;  2JEA I;  4QMF B;  2LTM A;  1SEI A;  3T1H H;  2HH3 A;  3J7A K;  4B3T H;  2CTL A;  4B3R H;  2BA0 A;  2PT7 G;  4DV2 H;  4DV0 H;  3AEV B;  5LMN H;  4DUY H;  2AXY A;  2UXD H;  4AIM A;  2F4V H;  3KDK A;  2X06 A;  4DR2 H;  1ZTG A;  1ZZK A;  1FJG H;  1HR0 H;  5BR8 H;  3T1Y H;  1F0X A;  4YY3 H;  1FKA H;  1IBM H;  5IT9 W;  5C0X G;  5DT9 A;  4X64 H;  1XMO H;  1VIH A;  4NXM H;  2FFM A;  2JE6 I;  2E3U A;  2JEB I;  1EC6 A;  1N33 H;  2PY9 A;  4OX9 H;  5JEA G;  1X4M A;  3GAB A;  4DV3 H;  1HNZ H;  4B8C D;  2CPM A;  1IBK H;  1Z2I A;  2VKC A;  1DTJ A;  1WHR A;  4FJS A;  4DUZ H;  2JA9 A;  4X66 H;  2CPQ A;  1ODH A;  5IWA H;  4LFC H;  4DV5 H;  4LF4 H;  4DR7 H;  4AM3 A;  5K36 G;  4LF8 H;  1XMQ H;  4JI8 H;  2A1S A;  4PDB A;  4DV4 H;  2VQE H;  4AQY H;  3V69 A;  4LF9 H;  2UU9 H;  1HNW H;  4NBQ A;  1WTJ A;  1KHM A;  4DR6 H;  4JI4 H;  4DR4 H;  4G08 A;  3OET A;  1XNR H;  2UUA H;  4JYA H;  2FPH X;  2ANN A;  5FLX W;  1XRH A;  4LF7 H;  2HH2 A;  3L7Z C;  2LRR A;  1S03 G;  3GKU A;  1X0A A;  4JVY A;  3FAU A;  2P2R A;  2OPU A;  4WAL A;  1V9N A;  2JVZ A;  4NZR M;  3J80 W;  2PQU A;  2ZM6 H;  2DGR A;  1DT4 A;  1AN7 A;  2K1H A;  2Z0S A;  4DV1 H;  4DV6 H;  1I94 H;  1V8C A;  2MJH A;  2OPV A;  2CTE A;  1K1G A; 
#chains in the Genus database with same CATH homology
 2NN6 G;  2JA9 A;  1J5K A;  2CPQ A;  4WAN A;  2JEA I;  4QMF B;  4BA2 I;  1X4N A;  2HH3 A;  4AM3 A;  3VKE A;  4LIJ A;  2FMR A;  5K36 G;  4JVH A;  2CTL A;  1ZZJ A;  2BA0 A;  3AEV B;  2OPV A;  2AXY A;  3V69 A;  4AIM A;  1ZTG A;  4NBQ A;  1KHM A;  1ZZK A;  2CTF A;  2YQR A;  2CTK A;  2ANN A;  5C0X G;  2HH2 A;  2QND A;  3L7Z C;  1J4W A;  1VIH A;  3U1K A;  2ANR A;  4OO1 G;  2JE6 I;  1WE8 A;  2E3U A;  4JVY A;  2P2R A;  2OPU A;  4WAL A;  2JVZ A;  2JZX A;  2JEB I;  4B8T A;  2PQU A;  4IFD G;  1EC6 A;  2DGR A;  1TUA A;  1DT4 A;  2Z0S A;  1X4M A;  5JEA G;  1WVN A;  2PY9 A;  2CTM A;  4BA1 I;  1ZZI A;  1VIG A;  2MJH A;  2BL5 A;  2CTJ A;  2CTE A;  1K1G A;  1DTJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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