1ZZIA

Crystal structure analysis of the third kh domain of hnrnp k in complex with ssdna
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
82
structure length
82
Chain Sequence
GAMGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein/dna
molecule keywords 5'-D(*CP*TP*CP*CP*CP*C)-3'
publication title X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids
pubmed doi rcsb
source organism Homo sapiens
total genus 20
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1zziA00
1EC6A 4JVYA 2YQRA 1ZZIA 1WVNA 2CTKA 2PQUA 2JEBI 4AM3A 1J5KA 2P2RA 1DT4A 2JEAI 1ZTGA 2CTFA 2MJHA 2AXYA 2BA0A 2JA9A 3VKEA 2QNDA 3V69A 3U1KA 3L7ZC 2BL5A 2CTMA 4IFDG 1KHMA 2CTEA 1ZZJA 2E3UA 2CPQA 4OO1G 2HH3A 1X4NA 2JE6I 2ANNA 1VIGA 2NN6G 4WALA 5K36G 2FMRA 4BA1I 5JEAG 2CTLA 1VIHA 2HH2A 2DGRA 2OPUA 5C0XG 1X4MA 4LIJA 1WE8A 1K1GA 2JVZA 4JVHA 2JZXA 2Z0SA 4AIMA 4B8TA 1ZZKA 4NBQA 1J4WA 2CTJA 2ANRA 4WANA 1DTJA 2PY9A 1TUAA 2OPVA 4QMFB 4BA2I 3AEVB
chains in the Genus database with same CATH superfamily
2CTKA 4AM3A 4K0KH 4GKKH 2Y3MA 1WTJA 1AN7A 2JA9A 3V69A 1N32H 3OSSD 4NZRM 4LFAH 1X9ZA 3JAMW 4IFDG 1KHMA 2VKCA 4B3MH 3GR5A 1WHRA 2E3UA 4JI0H 2HH3A 4X65H 1X4NA 3NCVA 4DV3H 1VIGA 2NN6G 5K36G 2FMRA 4DR1H 5JEAG 4LFCH 4B3RH 1VIHA 2PT7G 5C0XG 2CWFA 3EZJA 3RF2A 4JI3H 3QD7X 2VQEH 3T1HH 4JVHA 4YHHH 3J7AK 2Z0SA 4DV6H 4B3TH 4X64H 4LF8H 4WANA 4DUZH 2LRRA 1TUAA 4QMFB 1WVNA 3J80W 2UUAH 4DR7H 3KDGA 1J5KA 1DT4A 2P2RA 2HHHH 1XNQH 2MJHA 2BA0A 2UXCH 2QNDA 5A2QW 4JI1H 4JI6H 4LF9H 2BL5A 2CTMA 2UU9H 4KHPH 2K1HA 4OO1G 3GKUA 1IBLH 1HNZH 1V8CA 4X66H 1ODHA 4DV1H 1S20A 2D9IA 4LFBH 5IWAH 5LMUH 2HH2A 1I94H 1WE8A 1K1GA 1IBKH 2JVZA 3KDKA 2JZXA 1X0AA 4B8CD 4LF4H 4GKJH 1J4WA 2CTJA 3SB1A 1FJGH 2M6QA 1F0XA 3AEVB 2A1SA 1EC6A 2YQRA 1ZZIA 2PQUA 1SEIA 1N33H 2JEBI 4H8AA 4X62H 4DV5H 2JEAI 2CTFA 4EC5A 3VKEA 2AXYA 1HNWH 2UXBH 4JYAH 3T1YH 1V9NA 4NXNH 2CTEA 4LF5H 1I6UA 2LF0A 2JE6I 2ANNA 5LMNH 2FPHX 4NZTM 4PDBA 2UUCH 4AQYH 3GABA 1N34H 1N36H 2DGRA 2OPUA 1UG8A 4DR3H 5LL6b 4LIJA 3I0PA 1VBIA 4DV4H 4G08A 2F4VH 2FFMA 5BR8H 4AIMA 4B8TA 4DV2H 1Z2IA 2VQFH 4DUYH 1XMQH 4B3SH 4JI2H 3J81W 4OX9H 1XRHA 2G8YA 1XMOH 2X06A 1MSZA 4DV0H 3FAUA 2OPVA 4FJSA 1FKAH 4BA2I 2M8WA 4JI5H 4JVYA 3OTOH 2E5LH 3OETA 1XNRH 1ZTGA 2LTLA 4JI8H 1HNXH 3U1KA 4JV5H 4DR6H 3L7ZC 5FLXW 4OCHA 1ZZJA 4LF7H 2CPQA 5IT9W 2ZM6H 2ZQEA 5DT9A 4DR2H 4OD6A 4WALA 4BA1I 1IBMH 1HR0H 2CTLA 1X4MA 2CWHA 4FJUA 2LTMA 4DV7H 4YY3H 2CPMA 4JI4H 1ZZKA 4NBQA 2UXDH 1PQXA 4DR5H 4JI7H 1S03G 4NXMH 2ANRA 4LF6H 1DTJA 2PY9A 3UOEA 4DR4H 1NXUA 2O4CA 2UUBH 4E9JA 1J5EH
chains in the Genus database with same CATH topology
1EC6A 4JVYA 2YQRA 1ZZIA 1WVNA 2CTKA 2PQUA 2JEBI 4AM3A 1J5KA 2P2RA 1DT4A 2JEAI 1ZTGA 2CTFA 2MJHA 2AXYA 2BA0A 2JA9A 3VKEA 2QNDA 3V69A 3U1KA 3L7ZC 2BL5A 2CTMA 4IFDG 1KHMA 2CTEA 1ZZJA 2E3UA 2CPQA 4OO1G 2HH3A 1X4NA 2JE6I 2ANNA 1VIGA 2NN6G 4WALA 5K36G 2FMRA 4BA1I 5JEAG 2CTLA 1VIHA 2HH2A 2DGRA 2OPUA 5C0XG 1X4MA 4LIJA 1WE8A 1K1GA 2JVZA 4JVHA 2JZXA 2Z0SA 4AIMA 4B8TA 1ZZKA 4NBQA 1J4WA 2CTJA 2ANRA 4WANA 1DTJA 2PY9A 1TUAA 2OPVA 4QMFB 4BA2I 3AEVB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EC6 A;  4JVY A;  2YQR A;  1ZZI A;  1WVN A;  2CTK A;  2PQU A;  2JEB I;  4AM3 A;  1J5K A;  2P2R A;  1DT4 A;  2JEA I;  1ZTG A;  2CTF A;  2MJH A;  2AXY A;  2BA0 A;  2JA9 A;  3VKE A;  2QND A;  3V69 A;  3U1K A;  3L7Z C;  2BL5 A;  2CTM A;  4IFD G;  1KHM A;  2CTE A;  1ZZJ A;  2E3U A;  2CPQ A;  4OO1 G;  2HH3 A;  1X4N A;  2JE6 I;  2ANN A;  1VIG A;  2NN6 G;  4WAL A;  5K36 G;  2FMR A;  4BA1 I;  5JEA G;  2CTL A;  1VIH A;  2HH2 A;  2DGR A;  2OPU A;  5C0X G;  1X4M A;  4LIJ A;  1WE8 A;  1K1G A;  2JVZ A;  4JVH A;  2JZX A;  2Z0S A;  4AIM A;  4B8T A;  1ZZK A;  4NBQ A;  1J4W A;  2CTJ A;  2ANR A;  4WAN A;  1DTJ A;  2PY9 A;  1TUA A;  2OPV A;  4QMF B;  4BA2 I;  3AEV B; 
#chains in the Genus database with same CATH topology
 2CTK A;  4AM3 A;  4K0K H;  4GKK H;  2Y3M A;  1WTJ A;  1AN7 A;  2JA9 A;  3V69 A;  1N32 H;  3OSS D;  4NZR M;  4LFA H;  1X9Z A;  3JAM W;  4IFD G;  1KHM A;  2VKC A;  4B3M H;  3GR5 A;  1WHR A;  2E3U A;  4JI0 H;  2HH3 A;  4X65 H;  1X4N A;  3NCV A;  4DV3 H;  1VIG A;  2NN6 G;  5K36 G;  2FMR A;  4DR1 H;  5JEA G;  4LFC H;  4B3R H;  1VIH A;  2PT7 G;  5C0X G;  2CWF A;  3EZJ A;  3RF2 A;  4JI3 H;  3QD7 X;  2VQE H;  3T1H H;  4JVH A;  4YHH H;  3J7A K;  2Z0S A;  4DV6 H;  4B3T H;  4X64 H;  4LF8 H;  4WAN A;  4DUZ H;  2LRR A;  1TUA A;  4QMF B;  1WVN A;  3J80 W;  2UUA H;  4DR7 H;  3KDG A;  1J5K A;  1DT4 A;  2P2R A;  2HHH H;  1XNQ H;  2MJH A;  2BA0 A;  2UXC H;  2QND A;  5A2Q W;  4JI1 H;  4JI6 H;  4LF9 H;  2BL5 A;  2CTM A;  2UU9 H;  4KHP H;  2K1H A;  4OO1 G;  3GKU A;  1IBL H;  1HNZ H;  1V8C A;  4X66 H;  1ODH A;  4DV1 H;  1S20 A;  2D9I A;  4LFB H;  5IWA H;  5LMU H;  2HH2 A;  1I94 H;  1WE8 A;  1K1G A;  1IBK H;  2JVZ A;  3KDK A;  2JZX A;  1X0A A;  4B8C D;  4LF4 H;  4GKJ H;  1J4W A;  2CTJ A;  3SB1 A;  1FJG H;  2M6Q A;  1F0X A;  3AEV B;  2A1S A;  1EC6 A;  2YQR A;  1ZZI A;  2PQU A;  1SEI A;  1N33 H;  2JEB I;  4H8A A;  4X62 H;  4DV5 H;  2JEA I;  2CTF A;  4EC5 A;  3VKE A;  2AXY A;  1HNW H;  2UXB H;  4JYA H;  3T1Y H;  1V9N A;  4NXN H;  2CTE A;  4LF5 H;  1I6U A;  2LF0 A;  2JE6 I;  2ANN A;  5LMN H;  2FPH X;  4NZT M;  4PDB A;  2UUC H;  4AQY H;  3GAB A;  1N34 H;  1N36 H;  2DGR A;  2OPU A;  1UG8 A;  4DR3 H;  5LL6 b;  4LIJ A;  3I0P A;  1VBI A;  4DV4 H;  4G08 A;  2F4V H;  2FFM A;  5BR8 H;  4AIM A;  4B8T A;  4DV2 H;  1Z2I A;  2VQF H;  4DUY H;  1XMQ H;  4B3S H;  4JI2 H;  3J81 W;  4OX9 H;  1XRH A;  2G8Y A;  1XMO H;  2X06 A;  1MSZ A;  4DV0 H;  3FAU A;  2OPV A;  4FJS A;  1FKA H;  4BA2 I;  2M8W A;  4JI5 H;  4JVY A;  3OTO H;  2E5L H;  3OET A;  1XNR H;  1ZTG A;  2LTL A;  4JI8 H;  1HNX H;  3U1K A;  4JV5 H;  4DR6 H;  3L7Z C;  5FLX W;  4OCH A;  1ZZJ A;  4LF7 H;  2CPQ A;  5IT9 W;  2ZM6 H;  2ZQE A;  5DT9 A;  4DR2 H;  4OD6 A;  4WAL A;  4BA1 I;  1IBM H;  1HR0 H;  2CTL A;  1X4M A;  2CWH A;  4FJU A;  2LTM A;  4DV7 H;  4YY3 H;  2CPM A;  4JI4 H;  1ZZK A;  4NBQ A;  2UXD H;  1PQX A;  4DR5 H;  4JI7 H;  1S03 G;  4NXM H;  2ANR A;  4LF6 H;  1DTJ A;  2PY9 A;  3UOE A;  4DR4 H;  1NXU A;  2O4C A;  2UUB H;  4E9J A;  1J5E H; 
#chains in the Genus database with same CATH homology
 1EC6 A;  4JVY A;  2YQR A;  1ZZI A;  1WVN A;  2CTK A;  2PQU A;  2JEB I;  4AM3 A;  1J5K A;  2P2R A;  1DT4 A;  2JEA I;  1ZTG A;  2CTF A;  2MJH A;  2AXY A;  2BA0 A;  2JA9 A;  3VKE A;  2QND A;  3V69 A;  3U1K A;  3L7Z C;  2BL5 A;  2CTM A;  4IFD G;  1KHM A;  2CTE A;  1ZZJ A;  2E3U A;  2CPQ A;  4OO1 G;  2HH3 A;  1X4N A;  2JE6 I;  2ANN A;  1VIG A;  2NN6 G;  4WAL A;  5K36 G;  2FMR A;  4BA1 I;  5JEA G;  2CTL A;  1VIH A;  2HH2 A;  2DGR A;  2OPU A;  5C0X G;  1X4M A;  4LIJ A;  1WE8 A;  1K1G A;  2JVZ A;  4JVH A;  2JZX A;  2Z0S A;  4AIM A;  4B8T A;  1ZZK A;  4NBQ A;  1J4W A;  2CTJ A;  2ANR A;  4WAN A;  1DTJ A;  2PY9 A;  1TUA A;  2OPV A;  4QMF B;  4BA2 I;  3AEV B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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