3V69A

Filia-n crystal structure
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
116
structure length
116
Chain Sequence
ASLKRFQTLVPLDHKQGTLFEIIGEPKLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAHYCRMKLMEIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Protein Filia
publication title The N-terminus of FILIA Forms an Atypical KH Domain with a Unique Extension Involved in Interaction with RNA.
pubmed doi rcsb
source organism Mus musculus
total genus 27
structure length 116
sequence length 116
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16005 MOEP19 KH-like RNA-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 3v69A00
2Z0SA 1K1GA 2JZXA 3VKEA 1DTJA 2DGRA 2JA9A 2JVZA 2OPUA 2QNDA 2ANNA 2NN6G 4AIMA 2PQUA 3AEVB 2CPQA 3L7ZC 2MJHA 2JEAI 4B8TA 1WE8A 2E3UA 2BL5A 3U1KA 2CTLA 4WANA 1X4NA 2JE6I 5C0XG 4LIJA 1DT4A 4QMFB 2CTKA 3V69A 1J4WA 2CTMA 1J5KA 2HH3A 1WVNA 2JEBI 4AM3A 4BA2I 1ZZIA 2OPVA 1EC6A 5K36G 2CTFA 4IFDG 2CTJA 1VIHA 4WALA 2YQRA 1X4MA 4BA1I 2ANRA 2BA0A 1ZZJA 1ZTGA 4OO1G 2CTEA 5JEAG 1ZZKA 1TUAA 2P2RA 2PY9A 2AXYA 4JVHA 1VIGA 4NBQA 2FMRA 1KHMA 2HH2A 4JVYA
chains in the Genus database with same CATH superfamily
4DR4H 1V9NA 3RF2A 1N33H 1DTJA 2OPUA 3JAMW 4LF6H 2LF0A 2NN6G 3AEVB 2PT7G 1NXUA 2VQFH 1XNRH 2LRRA 3U1KA 3NCVA 1UG8A 1XMQH 4DV2H 1HNWH 2UXCH 4G08A 1DT4A 4DR3H 4JI0H 1MSZA 2M6QA 3OSSD 3EZJA 1WVNA 2G8YA 1V8CA 1HNXH 4AM3A 4B3SH 4K0KH 1EC6A 5K36G 4YHHH 1VIHA 2X06A 4BA1I 2ANRA 4PDBA 2BA0A 1X0AA 1ZZJA 1ZTGA 3KDGA 4LFBH 4DUYH 4DV1H 1IBMH 2P2RA 4YY3H 1PQXA 5LMUH 3OETA 1S20A 3KDKA 4DV3H 4WANA 4DR2H 3GABA 5DT9A 2JZXA 1K1GA 4LFAH 2JA9A 4DR7H 2QNDA 2ANNA 2PQUA 2UU9H 2LTMA 4JI4H 4DV0H 2CWHA 2M8WA 2ZM6H 5IT9W 4JI7H 4B8TA 2BL5A 4NZTM 2FPHX 4B8CD 2JE6I 5C0XG 4QMFB 4X62H 2VKCA 4JI3H 1J4WA 4LF9H 2LTLA 4B3TH 4NBQA 4DR1H 1J5EH 1I94H 4OX9H 2JEBI 1IBKH 4BA2I 2OPVA 4OCHA 4GKJH 4JI2H 3T1HH 4WALA 2YQRA 4JI8H 4DUZH 2O4CA 4OO1G 2K1HA 4DV6H 3FAUA 4OD6A 3QD7X 2UUAH 2Z0SA 4JI6H 5A2QW 1IBLH 4DR6H 3L7ZC 4JI1H 2MJHA 2JEAI 4LFCH 1WE8A 1FKAH 1X9ZA 2CTLA 1I6UA 1N32H 4GKKH 1XRHA 4LIJA 2CTKA 3V69A 1HR0H 2HHHH 1FJGH 1F0XA 1Z2IA 2HH3A 4JI5H 4FJUA 4LF5H 1XNQH 5IWAH 1N34H 4B3RH 2CTFA 4FJSA 2CTJA 4DV5H 4IFDG 2FFMA 1VBIA 1X4MA 5JEAG 2PY9A 1TUAA 3SB1A 2ZQEA 1XMOH 4JVHA 1VIGA 5LL6b 2FMRA 4JVYA 3J80W 3VKEA 2DGRA 2JVZA 4AIMA 2CPQA 4X64H 3J7AK 2UXBH 4NXNH 2CPMA 2E3UA 1HNZH 1AN7A 1X4NA 2UUCH 2VQEH 1SEIA 4X65H 1WTJA 1WHRA 4JYAH 2CTMA 1ODHA 1J5KA 4LF8H 4E9JA 3I0PA 2F4VH 1ZZIA 3GR5A 2CWFA 4DR5H 4EC5A 3T1YH 2Y3MA 4LF7H 2UXDH 3GKUA 3UOEA 2D9IA 4DV4H 4LF4H 5FLXW 4KHPH 4NZRM 4DV7H 4JV5H 2A1SA 2UUBH 2CTEA 4NXMH 1ZZKA 5LMNH 1S03G 3OTOH 2AXYA 4B3MH 4X66H 4AQYH 5BR8H 1N36H 4H8AA 3J81W 1KHMA 2HH2A 2E5LH
chains in the Genus database with same CATH topology
2Z0SA 1K1GA 2JZXA 3VKEA 1DTJA 2DGRA 2JA9A 2JVZA 2OPUA 2QNDA 2ANNA 2NN6G 4AIMA 2PQUA 3AEVB 2CPQA 3L7ZC 2MJHA 2JEAI 4B8TA 1WE8A 2E3UA 2BL5A 3U1KA 2CTLA 4WANA 1X4NA 2JE6I 5C0XG 4LIJA 1DT4A 4QMFB 2CTKA 3V69A 1J4WA 2CTMA 1J5KA 2HH3A 1WVNA 2JEBI 4AM3A 4BA2I 1ZZIA 2OPVA 1EC6A 5K36G 2CTFA 4IFDG 2CTJA 1VIHA 4WALA 2YQRA 1X4MA 4BA1I 2ANRA 2BA0A 1ZZJA 1ZTGA 4OO1G 2CTEA 5JEAG 1ZZKA 1TUAA 2P2RA 2PY9A 2AXYA 4JVHA 1VIGA 4NBQA 2FMRA 1KHMA 2HH2A 4JVYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z0S A;  1K1G A;  2JZX A;  3VKE A;  1DTJ A;  2DGR A;  2JA9 A;  2JVZ A;  2OPU A;  2QND A;  2ANN A;  2NN6 G;  4AIM A;  2PQU A;  3AEV B;  2CPQ A;  3L7Z C;  2MJH A;  2JEA I;  4B8T A;  1WE8 A;  2E3U A;  2BL5 A;  3U1K A;  2CTL A;  4WAN A;  1X4N A;  2JE6 I;  5C0X G;  4LIJ A;  1DT4 A;  4QMF B;  2CTK A;  3V69 A;  1J4W A;  2CTM A;  1J5K A;  2HH3 A;  1WVN A;  2JEB I;  4AM3 A;  4BA2 I;  1ZZI A;  2OPV A;  1EC6 A;  5K36 G;  2CTF A;  4IFD G;  2CTJ A;  1VIH A;  4WAL A;  2YQR A;  1X4M A;  4BA1 I;  2ANR A;  2BA0 A;  1ZZJ A;  1ZTG A;  4OO1 G;  2CTE A;  5JEA G;  1ZZK A;  1TUA A;  2P2R A;  2PY9 A;  2AXY A;  4JVH A;  1VIG A;  4NBQ A;  2FMR A;  1KHM A;  2HH2 A;  4JVY A; 
#chains in the Genus database with same CATH topology
 4DR4 H;  1V9N A;  3RF2 A;  1N33 H;  1DTJ A;  2OPU A;  3JAM W;  4LF6 H;  2LF0 A;  2NN6 G;  3AEV B;  2PT7 G;  1NXU A;  2VQF H;  1XNR H;  2LRR A;  3U1K A;  3NCV A;  1UG8 A;  1XMQ H;  4DV2 H;  1HNW H;  2UXC H;  4G08 A;  1DT4 A;  4DR3 H;  4JI0 H;  1MSZ A;  2M6Q A;  3OSS D;  3EZJ A;  1WVN A;  2G8Y A;  1V8C A;  1HNX H;  4AM3 A;  4B3S H;  4K0K H;  1EC6 A;  5K36 G;  4YHH H;  1VIH A;  2X06 A;  4BA1 I;  2ANR A;  4PDB A;  2BA0 A;  1X0A A;  1ZZJ A;  1ZTG A;  3KDG A;  4LFB H;  4DUY H;  4DV1 H;  1IBM H;  2P2R A;  4YY3 H;  1PQX A;  5LMU H;  3OET A;  1S20 A;  3KDK A;  4DV3 H;  4WAN A;  4DR2 H;  3GAB A;  5DT9 A;  2JZX A;  1K1G A;  4LFA H;  2JA9 A;  4DR7 H;  2QND A;  2ANN A;  2PQU A;  2UU9 H;  2LTM A;  4JI4 H;  4DV0 H;  2CWH A;  2M8W A;  2ZM6 H;  5IT9 W;  4JI7 H;  4B8T A;  2BL5 A;  4NZT M;  2FPH X;  4B8C D;  2JE6 I;  5C0X G;  4QMF B;  4X62 H;  2VKC A;  4JI3 H;  1J4W A;  4LF9 H;  2LTL A;  4B3T H;  4NBQ A;  4DR1 H;  1J5E H;  1I94 H;  4OX9 H;  2JEB I;  1IBK H;  4BA2 I;  2OPV A;  4OCH A;  4GKJ H;  4JI2 H;  3T1H H;  4WAL A;  2YQR A;  4JI8 H;  4DUZ H;  2O4C A;  4OO1 G;  2K1H A;  4DV6 H;  3FAU A;  4OD6 A;  3QD7 X;  2UUA H;  2Z0S A;  4JI6 H;  5A2Q W;  1IBL H;  4DR6 H;  3L7Z C;  4JI1 H;  2MJH A;  2JEA I;  4LFC H;  1WE8 A;  1FKA H;  1X9Z A;  2CTL A;  1I6U A;  1N32 H;  4GKK H;  1XRH A;  4LIJ A;  2CTK A;  3V69 A;  1HR0 H;  2HHH H;  1FJG H;  1F0X A;  1Z2I A;  2HH3 A;  4JI5 H;  4FJU A;  4LF5 H;  1XNQ H;  5IWA H;  1N34 H;  4B3R H;  2CTF A;  4FJS A;  2CTJ A;  4DV5 H;  4IFD G;  2FFM A;  1VBI A;  1X4M A;  5JEA G;  2PY9 A;  1TUA A;  3SB1 A;  2ZQE A;  1XMO H;  4JVH A;  1VIG A;  5LL6 b;  2FMR A;  4JVY A;  3J80 W;  3VKE A;  2DGR A;  2JVZ A;  4AIM A;  2CPQ A;  4X64 H;  3J7A K;  2UXB H;  4NXN H;  2CPM A;  2E3U A;  1HNZ H;  1AN7 A;  1X4N A;  2UUC H;  2VQE H;  1SEI A;  4X65 H;  1WTJ A;  1WHR A;  4JYA H;  2CTM A;  1ODH A;  1J5K A;  4LF8 H;  4E9J A;  3I0P A;  2F4V H;  1ZZI A;  3GR5 A;  2CWF A;  4DR5 H;  4EC5 A;  3T1Y H;  2Y3M A;  4LF7 H;  2UXD H;  3GKU A;  3UOE A;  2D9I A;  4DV4 H;  4LF4 H;  5FLX W;  4KHP H;  4NZR M;  4DV7 H;  4JV5 H;  2A1S A;  2UUB H;  2CTE A;  4NXM H;  1ZZK A;  5LMN H;  1S03 G;  3OTO H;  2AXY A;  4B3M H;  4X66 H;  4AQY H;  5BR8 H;  1N36 H;  4H8A A;  3J81 W;  1KHM A;  2HH2 A;  2E5L H; 
#chains in the Genus database with same CATH homology
 2Z0S A;  1K1G A;  2JZX A;  3VKE A;  1DTJ A;  2DGR A;  2JA9 A;  2JVZ A;  2OPU A;  2QND A;  2ANN A;  2NN6 G;  4AIM A;  2PQU A;  3AEV B;  2CPQ A;  3L7Z C;  2MJH A;  2JEA I;  4B8T A;  1WE8 A;  2E3U A;  2BL5 A;  3U1K A;  2CTL A;  4WAN A;  1X4N A;  2JE6 I;  5C0X G;  4LIJ A;  1DT4 A;  4QMF B;  2CTK A;  3V69 A;  1J4W A;  2CTM A;  1J5K A;  2HH3 A;  1WVN A;  2JEB I;  4AM3 A;  4BA2 I;  1ZZI A;  2OPV A;  1EC6 A;  5K36 G;  2CTF A;  4IFD G;  2CTJ A;  1VIH A;  4WAL A;  2YQR A;  1X4M A;  4BA1 I;  2ANR A;  2BA0 A;  1ZZJ A;  1ZTG A;  4OO1 G;  2CTE A;  5JEA G;  1ZZK A;  1TUA A;  2P2R A;  2PY9 A;  2AXY A;  4JVH A;  1VIG A;  4NBQ A;  2FMR A;  1KHM A;  2HH2 A;  4JVY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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