4OD6A

Structure of smr domain of muts2 from deinococcus radiodurans, mn2+ soaked
Total Genus 29
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
82
structure length
82
Chain Sequence
RFDNELQLRGLSVEAAVEELRAAIAEARALKETPLRVVHGKGMGVLRRTLRDYLKTDKNVESFHDAEANQGGHGVTIVNVKR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Endonuclease MutS2
publication title Structural and functional studies of MutS2 from Deinococcus radiodurans.
pubmed doi rcsb
source organism Deinococcus radiodurans
total genus 29
structure length 82
sequence length 82
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 4od6A00
4OCHA 2D9IA 3QD7X 4OD6A 3FAUA 2VKCA 2ZQEA
chains in the Genus database with same CATH superfamily
2CWHA 2FMRA 5LMNH 2D9IA 3AEVB 1J4WA 2UUAH 1J5KA 4NXNH 2ZQEA 2FFMA 1ODHA 3GR5A 4G08A 4FJSA 1X4NA 4NZTM 4JI0H 2E5LH 2UXDH 2JZXA 2P2RA 1XNQH 2LF0A 4X62H 1VIHA 4B3MH 2VKCA 3EZJA 3J81W 2ANNA 4X65H 2PT7G 4DUZH 3OETA 5IWAH 4E9JA 2JA9A 1ZZJA 2UUCH 4GKJH 4H8AA 4DR1H 2CTFA 1HNWH 3KDKA 4BA1I 1K1GA 4DV7H 4OX9H 2QNDA 5A2QW 4LF8H 5DT9A 1X0AA 4DUYH 5LL6b 2HHHH 4LF6H 1UG8A 3NCVA 2LTMA 1XNRH 2G8YA 1MSZA 3U1KA 2CPQA 4KHPH 2CTEA 2HH2A 2PY9A 4DR6H 4JYAH 2UXCH 2Z0SA 1XMQH 2JE6I 4DR5H 4EC5A 4LF5H 4JVYA 4GKKH 2YQRA 3SB1A 4QMFB 4JI4H 4BA2I 2M8WA 3J7AK 1DT4A 4X64H 1PQXA 4YY3H 1WHRA 3J80W 1N34H 4DR7H 1ZZIA 2PQUA 1VBIA 2JVZA 4NBQA 1HNZH 4B3TH 4JI3H 1S03G 1IBLH 4WANA 3OSSD 2X06A 2CTJA 4LIJA 2E3UA 4JI2H 2ANRA 2ZM6H 5BR8H 2VQFH 4NXMH 1N36H 1AN7A 2LTLA 1XRHA 5FLXW 4DV5H 4DR4H 2DGRA 4DR2H 4DV6H 1V8CA 2CWFA 4OD6A 4LF4H 3JAMW 2OPUA 1TUAA 4JI6H 3OTOH 1FJGH 4YHHH 4DV2H 2OPVA 4JI5H 1KHMA 1WVNA 2M6QA 4NZRM 2CTLA 3RF2A 1FKAH 2JEBI 4DV4H 1N33H 2MJHA 4JI1H 5LMUH 4B3RH 2CPMA 3V69A 4JI7H 5IT9W 1ZTGA 4DV1H 1S20A 3KDGA 1NXUA 4DV0H 2AXYA 4OCHA 1IBMH 5K36G 2NN6G 3T1YH 4JV5H 3T1HH 1XMOH 3GABA 4LFCH 3GKUA 4X66H 4B8TA 4WALA 4K0KH 2K1HA 3UOEA 2Y3MA 4PDBA 1N32H 2F4VH 3FAUA 1I6UA 1DTJA 5C0XG 1HR0H 1F0XA 3VKEA 2JEAI 4JVHA 1X4MA 3I0PA 1J5EH 4AM3A 2HH3A 4AIMA 5JEAG 2LRRA 1X9ZA 2CTKA 4AQYH 4JI8H 1EC6A 3L7ZC 2UXBH 4LF7H 4IFDG 3QD7X 1HNXH 2BA0A 4LFBH 1WE8A 4DV3H 2FPHX 4B3SH 4LF9H 1Z2IA 1ZZKA 2BL5A 1VIGA 1SEIA 4FJUA 4B8CD 1V9NA 2VQEH 4DR3H 1IBKH 2UU9H 1WTJA 1I94H 4LFAH 2CTMA 2UUBH 2A1SA 4OO1G 2O4CA
chains in the Genus database with same CATH topology
5LMNH 2D9IA 2UUAH 4NXNH 2ZQEA 1ODHA 3GR5A 4G08A 4NZTM 4JI0H 2E5LH 2UXDH 1XNQH 2LF0A 4X62H 4B3MH 2VKCA 3EZJA 3J81W 4X65H 2PT7G 4DUZH 3OETA 5IWAH 4E9JA 2UUCH 4GKJH 4DR1H 1HNWH 3KDKA 4DV7H 4OX9H 5A2QW 4LF8H 5DT9A 4DUYH 5LL6b 2HHHH 4LF6H 3NCVA 1XNRH 2UXCH 4KHPH 4JYAH 4DR6H 1XMQH 4DR5H 4EC5A 4LF5H 4GKKH 3SB1A 4JI4H 3J7AK 4X64H 4YY3H 3J80W 1N34H 4DR7H 4JI3H 1HNZH 1S03G 4B3TH 1IBLH 3OSSD 4JI2H 2ZM6H 5BR8H 2VQFH 4NXMH 1N36H 1AN7A 5FLXW 4DV5H 4DR4H 4DR2H 4DV6H 4OD6A 4LF4H 3JAMW 4JI6H 3OTOH 1FJGH 4YHHH 4DV2H 4JI5H 4NZRM 3RF2A 1FKAH 1N33H 4DV4H 4JI1H 5LMUH 4B3RH 4JI7H 5IT9W 4DV1H 3KDGA 4DV0H 4OCHA 1IBMH 3T1YH 4JV5H 3T1HH 1XMOH 3GABA 4LFCH 4X66H 4K0KH 2Y3MA 4PDBA 1N32H 2F4VH 3FAUA 1I6UA 1HR0H 1F0XA 1J5EH 4AQYH 4JI8H 1X9ZA 2UXBH 4LF7H 3QD7X 1HNXH 4LFBH 4DV3H 2FPHX 4B3SH 4LF9H 1SEIA 4B8CD 2VQEH 4DR3H 1IBKH 2UU9H 1I94H 4LFAH 2UUBH 2O4CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OCH A;  2D9I A;  3QD7 X;  4OD6 A;  3FAU A;  2VKC A;  2ZQE A; 
#chains in the Genus database with same CATH topology
 2CWH A;  2FMR A;  5LMN H;  2D9I A;  3AEV B;  1J4W A;  2UUA H;  1J5K A;  4NXN H;  2ZQE A;  2FFM A;  1ODH A;  3GR5 A;  4G08 A;  4FJS A;  1X4N A;  4NZT M;  4JI0 H;  2E5L H;  2UXD H;  2JZX A;  2P2R A;  1XNQ H;  2LF0 A;  4X62 H;  1VIH A;  4B3M H;  2VKC A;  3EZJ A;  3J81 W;  2ANN A;  4X65 H;  2PT7 G;  4DUZ H;  3OET A;  5IWA H;  4E9J A;  2JA9 A;  1ZZJ A;  2UUC H;  4GKJ H;  4H8A A;  4DR1 H;  2CTF A;  1HNW H;  3KDK A;  4BA1 I;  1K1G A;  4DV7 H;  4OX9 H;  2QND A;  5A2Q W;  4LF8 H;  5DT9 A;  1X0A A;  4DUY H;  5LL6 b;  2HHH H;  4LF6 H;  1UG8 A;  3NCV A;  2LTM A;  1XNR H;  2G8Y A;  1MSZ A;  3U1K A;  2CPQ A;  4KHP H;  2CTE A;  2HH2 A;  2PY9 A;  4DR6 H;  4JYA H;  2UXC H;  2Z0S A;  1XMQ H;  2JE6 I;  4DR5 H;  4EC5 A;  4LF5 H;  4JVY A;  4GKK H;  2YQR A;  3SB1 A;  4QMF B;  4JI4 H;  4BA2 I;  2M8W A;  3J7A K;  1DT4 A;  4X64 H;  1PQX A;  4YY3 H;  1WHR A;  3J80 W;  1N34 H;  4DR7 H;  1ZZI A;  2PQU A;  1VBI A;  2JVZ A;  4NBQ A;  1HNZ H;  4B3T H;  4JI3 H;  1S03 G;  1IBL H;  4WAN A;  3OSS D;  2X06 A;  2CTJ A;  4LIJ A;  2E3U A;  4JI2 H;  2ANR A;  2ZM6 H;  5BR8 H;  2VQF H;  4NXM H;  1N36 H;  1AN7 A;  2LTL A;  1XRH A;  5FLX W;  4DV5 H;  4DR4 H;  2DGR A;  4DR2 H;  4DV6 H;  1V8C A;  2CWF A;  4OD6 A;  4LF4 H;  3JAM W;  2OPU A;  1TUA A;  4JI6 H;  3OTO H;  1FJG H;  4YHH H;  4DV2 H;  2OPV A;  4JI5 H;  1KHM A;  1WVN A;  2M6Q A;  4NZR M;  2CTL A;  3RF2 A;  1FKA H;  2JEB I;  4DV4 H;  1N33 H;  2MJH A;  4JI1 H;  5LMU H;  4B3R H;  2CPM A;  3V69 A;  4JI7 H;  5IT9 W;  1ZTG A;  4DV1 H;  1S20 A;  3KDG A;  1NXU A;  4DV0 H;  2AXY A;  4OCH A;  1IBM H;  5K36 G;  2NN6 G;  3T1Y H;  4JV5 H;  3T1H H;  1XMO H;  3GAB A;  4LFC H;  3GKU A;  4X66 H;  4B8T A;  4WAL A;  4K0K H;  2K1H A;  3UOE A;  2Y3M A;  4PDB A;  1N32 H;  2F4V H;  3FAU A;  1I6U A;  1DTJ A;  5C0X G;  1HR0 H;  1F0X A;  3VKE A;  2JEA I;  4JVH A;  1X4M A;  3I0P A;  1J5E H;  4AM3 A;  2HH3 A;  4AIM A;  5JEA G;  2LRR A;  1X9Z A;  2CTK A;  4AQY H;  4JI8 H;  1EC6 A;  3L7Z C;  2UXB H;  4LF7 H;  4IFD G;  3QD7 X;  1HNX H;  2BA0 A;  4LFB H;  1WE8 A;  4DV3 H;  2FPH X;  4B3S H;  4LF9 H;  1Z2I A;  1ZZK A;  2BL5 A;  1VIG A;  1SEI A;  4FJU A;  4B8C D;  1V9N A;  2VQE H;  4DR3 H;  1IBK H;  2UU9 H;  1WTJ A;  1I94 H;  4LFA H;  2CTM A;  2UUB H;  2A1S A;  4OO1 G;  2O4C A; 
#chains in the Genus database with same CATH homology
 5LMN H;  2D9I A;  2UUA H;  4NXN H;  2ZQE A;  1ODH A;  3GR5 A;  4G08 A;  4NZT M;  4JI0 H;  2E5L H;  2UXD H;  1XNQ H;  2LF0 A;  4X62 H;  4B3M H;  2VKC A;  3EZJ A;  3J81 W;  4X65 H;  2PT7 G;  4DUZ H;  3OET A;  5IWA H;  4E9J A;  2UUC H;  4GKJ H;  4DR1 H;  1HNW H;  3KDK A;  4DV7 H;  4OX9 H;  5A2Q W;  4LF8 H;  5DT9 A;  4DUY H;  5LL6 b;  2HHH H;  4LF6 H;  3NCV A;  1XNR H;  2UXC H;  4KHP H;  4JYA H;  4DR6 H;  1XMQ H;  4DR5 H;  4EC5 A;  4LF5 H;  4GKK H;  3SB1 A;  4JI4 H;  3J7A K;  4X64 H;  4YY3 H;  3J80 W;  1N34 H;  4DR7 H;  4JI3 H;  1HNZ H;  1S03 G;  4B3T H;  1IBL H;  3OSS D;  4JI2 H;  2ZM6 H;  5BR8 H;  2VQF H;  4NXM H;  1N36 H;  1AN7 A;  5FLX W;  4DV5 H;  4DR4 H;  4DR2 H;  4DV6 H;  4OD6 A;  4LF4 H;  3JAM W;  4JI6 H;  3OTO H;  1FJG H;  4YHH H;  4DV2 H;  4JI5 H;  4NZR M;  3RF2 A;  1FKA H;  1N33 H;  4DV4 H;  4JI1 H;  5LMU H;  4B3R H;  4JI7 H;  5IT9 W;  4DV1 H;  3KDG A;  4DV0 H;  4OCH A;  1IBM H;  3T1Y H;  4JV5 H;  3T1H H;  1XMO H;  3GAB A;  4LFC H;  4X66 H;  4K0K H;  2Y3M A;  4PDB A;  1N32 H;  2F4V H;  3FAU A;  1I6U A;  1HR0 H;  1F0X A;  1J5E H;  4AQY H;  4JI8 H;  1X9Z A;  2UXB H;  4LF7 H;  3QD7 X;  1HNX H;  4LFB H;  4DV3 H;  2FPH X;  4B3S H;  4LF9 H;  1SEI A;  4B8C D;  2VQE H;  4DR3 H;  1IBK H;  2UU9 H;  1I94 H;  4LFA H;  2UUB H;  2O4C A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...