The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
59
|
sequence length |
233
|
structure length |
217
|
Chain Sequence |
AFVPAAHWTINLKDADIREFIDQISEITGETFVVDPRVKGQVSVVSKAQLSLSEVYQLFLSVMSTHGFTVVAQGDQARIVPNAAPDRLETRVIQVQQSPVSELIPLIRPLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRYGWVMDAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Protein transport
|
| molecule keywords |
General secretion pathway protein D
|
| publication title |
New Insights into the Assembly of Bacterial Secretins: STRUCTURAL STUDIES OF THE PERIPLASMIC DOMAIN OF XcpQ FROM PSEUDOMONAS AERUGINOSA.
pubmed doi rcsb |
| source organism |
Pseudomonas aeruginosa
|
| total genus |
59
|
| structure length |
217
|
| sequence length |
233
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2012-03-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03958 | Secretin_N | Bacterial type II/III secretion system short domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Ribosomal Protein S8; Chain: A, domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Ribosomal Protein S8; Chain: A, domain 1 |
#chains in the Genus database with same CATH superfamily 4G08 A; 4E9J A; 2Y3M A; 3OSS D; 4EC5 A; 3GR5 A; 3EZJ A; #chains in the Genus database with same CATH topology 4QMF B; 1I6U A; 4YHH H; 1F0X A; 2M8W A; 1N33 H; 2UXC H; 3T1Y H; 4AIM A; 1DTJ A; 1FKA H; 4B3M H; 4LF8 H; 2X06 A; 2Z0S A; 2ANR A; 3EZJ A; 4AM3 A; 1XNQ H; 1ZTG A; 1N32 H; 4JI7 H; 4KHP H; 2UXD H; 1V9N A; 4DUY H; 4DV0 H; 1J5K A; 5IWA H; 5LMN H; 3VKE A; 3NCV A; 5BR8 H; 4DR7 H; 2HH2 A; 3FAU A; 4JI5 H; 1K1G A; 2LTL A; 2ZQE A; 2FPH X; 3L7Z C; 3J7A K; 4NXM H; 2K1H A; 1TUA A; 1VIG A; 2JZX A; 4YY3 H; 1NXU A; 1S03 G; 2Y3M A; 4LF4 H; 1UG8 A; 1WTJ A; 1N34 H; 4JYA H; 1ZZJ A; 3OET A; 3OTO H; 1ZZK A; 5IT9 W; 4DR1 H; 2O4C A; 4FJU A; 4E9J A; 2ZM6 H; 5LMU H; 4WAN A; 4K0K H; 2CWH A; 2OPU A; 2MJH A; 2PT7 G; 3T1H H; 3J81 W; 4LF7 H; 4JV5 H; 4X62 H; 3U1K A; 2JVZ A; 3OSS D; 2LRR A; 2PQU A; 2LF0 A; 4DV5 H; 4NZR M; 4WAL A; 4JI0 H; 4B3T H; 2NN6 G; 4JI3 H; 2UXB H; 4DV7 H; 1WHR A; 4DV4 H; 2F4V H; 2G8Y A; 1IBL H; 4JI6 H; 4OO1 G; 1MSZ A; 2JE6 I; 3SB1 A; 1J4W A; 4DV2 H; 2M6Q A; 1X0A A; 3GKU A; 2E3U A; 1PQX A; 2JA9 A; 4G08 A; 5C0X G; 2CTK A; 1ZZI A; 4B8C D; 4B3S H; 2HHH H; 3J80 W; 4LFA H; 4DR4 H; 1X4N A; 2VKC A; 3KDK A; 4AQY H; 5K36 G; 4LIJ A; 4GKJ H; 2UUC H; 4DR3 H; 3AEV B; 2E5L H; 1EC6 A; 4JI4 H; 2JEA I; 1KHM A; 2CTJ A; 2LTM A; 1HR0 H; 1XRH A; 2BA0 A; 2CWF A; 2UU9 H; 5JEA G; 5DT9 A; 4X64 H; 2CTM A; 2UUA H; 2FFM A; 4B8T A; 1ODH A; 1HNZ H; 1XNR H; 2PY9 A; 1Z2I A; 4LF6 H; 4X66 H; 1IBK H; 2ANN A; 2CTE A; 2UUB H; 1IBM H; 4IFD G; 4FJS A; 1VIH A; 2QND A; 4NBQ A; 1V8C A; 2CPQ A; 1J5E H; 4JVY A; 4LFC H; 4LFB H; 3KDG A; 2A1S A; 4EC5 A; 4BA2 I; 1XMO H; 1DT4 A; 2P2R A; 3RF2 A; 3UOE A; 4DR6 H; 1N36 H; 4LF9 H; 4X65 H; 3GAB A; 1I94 H; 2OPV A; 4B3R H; 2DGR A; 1WE8 A; 4BA1 I; 4DV6 H; 4JI2 H; 1SEI A; 3JAM W; 2CPM A; 2BL5 A; 1FJG H; 2HH3 A; 3QD7 X; 1WVN A; 4H8A A; 4NZT M; 2VQE H; 4DV1 H; 2AXY A; 4OD6 A; 4NXN H; 2JEB I; 2D9I A; 4JI1 H; 4PDB A; 3V69 A; 1X9Z A; 1XMQ H; 5LL6 b; 4LF5 H; 1VBI A; 4DUZ H; 2CTL A; 2CTF A; 4DR5 H; 4DV3 H; 2FMR A; 1HNX H; 4JI8 H; 3GR5 A; 4OCH A; 5A2Q W; 1X4M A; 1S20 A; 4JVH A; 2VQF H; 1HNW H; 2YQR A; 4OX9 H; 5FLX W; 3I0P A; 1AN7 A; 4DR2 H; 4GKK H; #chains in the Genus database with same CATH homology 1I6U A; 4YHH H; 1F0X A; 1N33 H; 2UXC H; 3T1Y H; 4LF8 H; 1FKA H; 4B3M H; 3EZJ A; 1XNQ H; 1N32 H; 4JI7 H; 4KHP H; 2UXD H; 4DV0 H; 4DUY H; 5IWA H; 5LMN H; 3NCV A; 5BR8 H; 4DR7 H; 3FAU A; 4JI5 H; 2ZQE A; 2FPH X; 3J7A K; 4NXM H; 4YY3 H; 1S03 G; 2Y3M A; 4LF4 H; 1N34 H; 4JYA H; 3OET A; 3OTO H; 5IT9 W; 4DR1 H; 2O4C A; 4E9J A; 2ZM6 H; 5LMU H; 4K0K H; 4LF7 H; 2PT7 G; 3T1H H; 3J81 W; 4JV5 H; 4X62 H; 3OSS D; 2LF0 A; 4DV5 H; 4NZR M; 4JI0 H; 4B3T H; 4JI3 H; 2UXB H; 4DV7 H; 2F4V H; 4DV4 H; 1IBL H; 4JI6 H; 3SB1 A; 4DV2 H; 4G08 A; 4B3S H; 4B8C D; 4LFA H; 2HHH H; 3J80 W; 4DR4 H; 2VKC A; 3KDK A; 4AQY H; 4GKJ H; 2UUC H; 4DR3 H; 2E5L H; 4JI4 H; 1HR0 H; 2UU9 H; 5DT9 A; 4X64 H; 2UUA H; 1HNZ H; 1ODH A; 1XNR H; 4LF6 H; 4X66 H; 1IBK H; 2UUB H; 1IBM H; 1J5E H; 4LFC H; 4LFB H; 3KDG A; 4EC5 A; 1XMO H; 3RF2 A; 4DR6 H; 1N36 H; 4LF9 H; 4X65 H; 3GAB A; 1I94 H; 4B3R H; 4DV6 H; 4JI2 H; 1SEI A; 3JAM W; 1FJG H; 3QD7 X; 4NZT M; 2VQE H; 4DV1 H; 4NXN H; 4PDB A; 4OD6 A; 4JI1 H; 2D9I A; 1X9Z A; 1XMQ H; 5LL6 b; 4LF5 H; 4DUZ H; 4DR5 H; 4DV3 H; 1HNX H; 4JI8 H; 3GR5 A; 4OCH A; 5A2Q W; 2VQF H; 1HNW H; 4OX9 H; 5FLX W; 1AN7 A; 4DR2 H; 4GKK H;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
