1KHMA

C-terminal kh domain of hnrnp k (kh3)
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
89
structure length
89
Chain Sequence
GSPNSYGDLGGPIITTQVTIPKDLARSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords PROTEIN (HNRNP K)
publication title High precision solution structure of the C-terminal KH domain of heterogeneous nuclear ribonucleoprotein K, a c-myc transcription factor.
pubmed doi rcsb
source organism Homo sapiens
total genus 16
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 1999-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1khmA00
2E3UA 4JVHA 2CTLA 2JVZA 2BL5A 2NN6G 4B8TA 1EC6A 1X4NA 4BA1I 2PQUA 1J4WA 4OO1G 1DT4A 1J5KA 2MJHA 2OPUA 4LIJA 1ZZIA 2ANNA 4AIMA 2QNDA 2CTFA 2HH3A 4NBQA 3U1KA 3VKEA 1WVNA 2AXYA 1WE8A 2PY9A 1KHMA 5JEAG 2DGRA 1ZZJA 1DTJA 2Z0SA 1TUAA 3AEVB 5C0XG 4WALA 2HH2A 2YQRA 4AM3A 2JZXA 2JA9A 3L7ZC 1X4MA 4QMFB 2BA0A 3V69A 4WANA 2JE6I 2OPVA 1ZTGA 1VIGA 2P2RA 2CTJA 1VIHA 2FMRA 2JEBI 1ZZKA 2JEAI 4BA2I 5K36G 2CTMA 1K1GA 2CTEA 2CTKA 2ANRA 2CPQA 4IFDG 4JVYA
chains in the Genus database with same CATH superfamily
4DR7H 4FJUA 2A1SA 1NXUA 2Y3MA 2NN6G 4AQYH 4B3RH 2FPHX 4X64H 4LF4H 2LTMA 4JI7H 1HNXH 4E9JA 1V9NA 4NZTM 4LF5H 4NXMH 4LIJA 4OX9H 2ANNA 2LTLA 4AIMA 3U1KA 4NBQA 4GKJH 2PY9A 3QD7X 1HR0H 1TUAA 1V8CA 3OSSD 2F4VH 1XRHA 1S03G 4JI4H 1X4MA 4QMFB 4JI0H 1ZTGA 2P2RA 3OTOH 3J7AK 1WTJA 4DUZH 1XNRH 3KDGA 2LRRA 2X06A 2CTMA 4JI1H 4YHHH 2ANRA 2DGRA 2CPQA 1IBLH 1EC6A 3FAUA 1F0XA 3UOEA 3JAMW 1J5EH 4JVHA 2CTLA 2G8YA 3J80W 1N34H 4B3TH 2FFMA 3RF2A 4DV3H 4B8TA 2UUCH 2PQUA 5LMNH 1DT4A 2VQFH 2VQEH 4DV5H 2QNDA 4DV4H 4JI6H 3VKEA 4LF6H 1WE8A 3GR5A 5DT9A 5JEAG 3J81W 2CWFA 4WALA 4DV7H 3EZJA 4WANA 1HNZH 3V69A 4B3SH 2BA0A 4YY3H 2OPVA 3NCVA 5BR8H 4KHPH 4DR1H 2O4CA 2PT7G 2JEBI 1N32H 4DR4H 1K1GA 2UUBH 1XNQH 4FJSA 4DUYH 2LF0A 4JVYA 1X0AA 1PQXA 4LFCH 1IBKH 2BL5A 1N33H 1MSZA 4DV1H 4PDBA 3I0PA 4BA1I 1J5KA 2MJHA 2OPUA 1N36H 4JI2H 2K1HA 2UU9H 5IT9W 1KHMA 1WHRA 1WVNA 2AXYA 2HHHH 3SB1A 4X65H 1FKAH 2ZQEA 1DTJA 4DV2H 1ZZJA 3AEVB 4B3MH 5C0XG 4NZRM 3OETA 4G08A 5LL6b 4AM3A 4K0KH 2UXDH 2JA9A 4JI5H 4X66H 2JE6I 5LMUH 2E5LH 1X9ZA 2CWHA 4OCHA 4LFAH 5IWAH 4LF8H 1VBIA 2CTKA 4B8CD 1UG8A 2UUAH 1HNWH 1I6UA 2E3UA 1Z2IA 2JVZA 2UXBH 3GKUA 4JI8H 3GABA 1I94H 4H8AA 4DR2H 1X4NA 3T1YH 1FJGH 4OO1G 1J4WA 4NXNH 4DR5H 1ZZIA 2CTFA 2HH3A 2M6QA 4OD6A 4DV0H 4GKKH 4DR6H 5FLXW 2Z0SA 1XMOH 4JI3H 2VKCA 2ZM6H 2YQRA 1S20A 2CPMA 4DR3H 1SEIA 4LF7H 1AN7A 2JZXA 3L7ZC 4EC5A 3KDKA 1IBMH 1VIGA 2CTJA 1VIHA 1XMQH 2FMRA 4DV6H 2D9IA 5A2QW 2UXCH 1ZZKA 2JEAI 4JV5H 1ODHA 3T1HH 4BA2I 4X62H 4JYAH 5K36G 2M8WA 4LF9H 2CTEA 2HH2A 4IFDG 4LFBH
chains in the Genus database with same CATH topology
2E3UA 4JVHA 2CTLA 2JVZA 2BL5A 2NN6G 4B8TA 1EC6A 1X4NA 4BA1I 2PQUA 1J4WA 4OO1G 1DT4A 1J5KA 2MJHA 2OPUA 4LIJA 1ZZIA 2ANNA 4AIMA 2QNDA 2CTFA 2HH3A 4NBQA 3U1KA 3VKEA 1WVNA 2AXYA 1WE8A 2PY9A 1KHMA 5JEAG 2DGRA 1ZZJA 1DTJA 2Z0SA 1TUAA 3AEVB 5C0XG 4WALA 2HH2A 2YQRA 4AM3A 2JZXA 2JA9A 3L7ZC 1X4MA 4QMFB 2BA0A 3V69A 4WANA 2JE6I 2OPVA 1ZTGA 1VIGA 2P2RA 2CTJA 1VIHA 2FMRA 2JEBI 1ZZKA 2JEAI 4BA2I 5K36G 2CTMA 1K1GA 2CTEA 2CTKA 2ANRA 2CPQA 4IFDG 4JVYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E3U A;  4JVH A;  2CTL A;  2JVZ A;  2BL5 A;  2NN6 G;  4B8T A;  1EC6 A;  1X4N A;  4BA1 I;  2PQU A;  1J4W A;  4OO1 G;  1DT4 A;  1J5K A;  2MJH A;  2OPU A;  4LIJ A;  1ZZI A;  2ANN A;  4AIM A;  2QND A;  2CTF A;  2HH3 A;  4NBQ A;  3U1K A;  3VKE A;  1WVN A;  2AXY A;  1WE8 A;  2PY9 A;  1KHM A;  5JEA G;  2DGR A;  1ZZJ A;  1DTJ A;  2Z0S A;  1TUA A;  3AEV B;  5C0X G;  4WAL A;  2HH2 A;  2YQR A;  4AM3 A;  2JZX A;  2JA9 A;  3L7Z C;  1X4M A;  4QMF B;  2BA0 A;  3V69 A;  4WAN A;  2JE6 I;  2OPV A;  1ZTG A;  1VIG A;  2P2R A;  2CTJ A;  1VIH A;  2FMR A;  2JEB I;  1ZZK A;  2JEA I;  4BA2 I;  5K36 G;  2CTM A;  1K1G A;  2CTE A;  2CTK A;  2ANR A;  2CPQ A;  4IFD G;  4JVY A; 
#chains in the Genus database with same CATH topology
 4DR7 H;  4FJU A;  2A1S A;  1NXU A;  2Y3M A;  2NN6 G;  4AQY H;  4B3R H;  2FPH X;  4X64 H;  4LF4 H;  2LTM A;  4JI7 H;  1HNX H;  4E9J A;  1V9N A;  4NZT M;  4LF5 H;  4NXM H;  4LIJ A;  4OX9 H;  2ANN A;  2LTL A;  4AIM A;  3U1K A;  4NBQ A;  4GKJ H;  2PY9 A;  3QD7 X;  1HR0 H;  1TUA A;  1V8C A;  3OSS D;  2F4V H;  1XRH A;  1S03 G;  4JI4 H;  1X4M A;  4QMF B;  4JI0 H;  1ZTG A;  2P2R A;  3OTO H;  3J7A K;  1WTJ A;  4DUZ H;  1XNR H;  3KDG A;  2LRR A;  2X06 A;  2CTM A;  4JI1 H;  4YHH H;  2ANR A;  2DGR A;  2CPQ A;  1IBL H;  1EC6 A;  3FAU A;  1F0X A;  3UOE A;  3JAM W;  1J5E H;  4JVH A;  2CTL A;  2G8Y A;  3J80 W;  1N34 H;  4B3T H;  2FFM A;  3RF2 A;  4DV3 H;  4B8T A;  2UUC H;  2PQU A;  5LMN H;  1DT4 A;  2VQF H;  2VQE H;  4DV5 H;  2QND A;  4DV4 H;  4JI6 H;  3VKE A;  4LF6 H;  1WE8 A;  3GR5 A;  5DT9 A;  5JEA G;  3J81 W;  2CWF A;  4WAL A;  4DV7 H;  3EZJ A;  4WAN A;  1HNZ H;  3V69 A;  4B3S H;  2BA0 A;  4YY3 H;  2OPV A;  3NCV A;  5BR8 H;  4KHP H;  4DR1 H;  2O4C A;  2PT7 G;  2JEB I;  1N32 H;  4DR4 H;  1K1G A;  2UUB H;  1XNQ H;  4FJS A;  4DUY H;  2LF0 A;  4JVY A;  1X0A A;  1PQX A;  4LFC H;  1IBK H;  2BL5 A;  1N33 H;  1MSZ A;  4DV1 H;  4PDB A;  3I0P A;  4BA1 I;  1J5K A;  2MJH A;  2OPU A;  1N36 H;  4JI2 H;  2K1H A;  2UU9 H;  5IT9 W;  1KHM A;  1WHR A;  1WVN A;  2AXY A;  2HHH H;  3SB1 A;  4X65 H;  1FKA H;  2ZQE A;  1DTJ A;  4DV2 H;  1ZZJ A;  3AEV B;  4B3M H;  5C0X G;  4NZR M;  3OET A;  4G08 A;  5LL6 b;  4AM3 A;  4K0K H;  2UXD H;  2JA9 A;  4JI5 H;  4X66 H;  2JE6 I;  5LMU H;  2E5L H;  1X9Z A;  2CWH A;  4OCH A;  4LFA H;  5IWA H;  4LF8 H;  1VBI A;  2CTK A;  4B8C D;  1UG8 A;  2UUA H;  1HNW H;  1I6U A;  2E3U A;  1Z2I A;  2JVZ A;  2UXB H;  3GKU A;  4JI8 H;  3GAB A;  1I94 H;  4H8A A;  4DR2 H;  1X4N A;  3T1Y H;  1FJG H;  4OO1 G;  1J4W A;  4NXN H;  4DR5 H;  1ZZI A;  2CTF A;  2HH3 A;  2M6Q A;  4OD6 A;  4DV0 H;  4GKK H;  4DR6 H;  5FLX W;  2Z0S A;  1XMO H;  4JI3 H;  2VKC A;  2ZM6 H;  2YQR A;  1S20 A;  2CPM A;  4DR3 H;  1SEI A;  4LF7 H;  1AN7 A;  2JZX A;  3L7Z C;  4EC5 A;  3KDK A;  1IBM H;  1VIG A;  2CTJ A;  1VIH A;  1XMQ H;  2FMR A;  4DV6 H;  2D9I A;  5A2Q W;  2UXC H;  1ZZK A;  2JEA I;  4JV5 H;  1ODH A;  3T1H H;  4BA2 I;  4X62 H;  4JYA H;  5K36 G;  2M8W A;  4LF9 H;  2CTE A;  2HH2 A;  4IFD G;  4LFB H; 
#chains in the Genus database with same CATH homology
 2E3U A;  4JVH A;  2CTL A;  2JVZ A;  2BL5 A;  2NN6 G;  4B8T A;  1EC6 A;  1X4N A;  4BA1 I;  2PQU A;  1J4W A;  4OO1 G;  1DT4 A;  1J5K A;  2MJH A;  2OPU A;  4LIJ A;  1ZZI A;  2ANN A;  4AIM A;  2QND A;  2CTF A;  2HH3 A;  4NBQ A;  3U1K A;  3VKE A;  1WVN A;  2AXY A;  1WE8 A;  2PY9 A;  1KHM A;  5JEA G;  2DGR A;  1ZZJ A;  1DTJ A;  2Z0S A;  1TUA A;  3AEV B;  5C0X G;  4WAL A;  2HH2 A;  2YQR A;  4AM3 A;  2JZX A;  2JA9 A;  3L7Z C;  1X4M A;  4QMF B;  2BA0 A;  3V69 A;  4WAN A;  2JE6 I;  2OPV A;  1ZTG A;  1VIG A;  2P2R A;  2CTJ A;  1VIH A;  2FMR A;  2JEB I;  1ZZK A;  2JEA I;  4BA2 I;  5K36 G;  2CTM A;  1K1G A;  2CTE A;  2CTK A;  2ANR A;  2CPQ A;  4IFD G;  4JVY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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