2FFMA

X-ray crystal structure of protein sav1430 from staphylococcus aureus. northeast structural genomics consortium target zr18.
Total Genus 15
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
83
structure length
83
Chain Sequence
MKIISISETPNHNTMKITLSESREGMTSDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAVFE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
source organism Staphylococcus aureus subsp. aureus mu50
publication title Crystal Structure of the Hypothetical Protein SAV1430 from Staphylococcus aureus, Northeast Structural Genomics ZR18.
rcsb
molecule keywords SAV1430
total genus 15
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2005-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08712 Nfu_N Scaffold protein Nfu/NifU N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Scaffold protein Nfu/NifU, N-terminal domain 2ffmA00
2M6QA 2M8WA 2K1HA 1PQXA 2FFMA 2LTLA 2LTMA
chains in the Genus database with same CATH superfamily
2M6QA 2D9IA 2CPQA 3KDGA 2ANNA 4B3TH 3OSSD 2CTFA 2JA9A 4FJSA 4EC5A 4E9JA 4B8TA 1IBMH 2PT7G 4QMFB 2OPUA 4JI6H 4LFAH 5DT9A 2K1HA 3J81W 2Y3MA 2CPMA 4NBQA 4DV5H 4GKKH 1WTJA 4YHHH 1VBIA 4NXNH 2UUCH 4KHPH 4JYAH 1SEIA 4DR3H 2MJHA 2PY9A 2LF0A 4OD6A 3I0PA 4DR5H 1ZZIA 4X64H 4DV4H 1ODHA 1TUAA 2JZXA 1AN7A 2A1SA 2ANRA 1WE8A 2O4CA 4FJUA 4DV2H 1N36H 2VKCA 4DR7H 1VIGA 1N33H 4PDBA 4B3MH 3VKEA 1ZZJA 2HH3A 4B3RH 2CTMA 4DV1H 2CWHA 2JVZA 1S20A 4NZRM 1F0XA 4X65H 2UXCH 1IBLH 3GR5A 5K36G 3GKUA 4DUZH 4JI1H 4LFBH 2ZM6H 3V69A 1N32H 1WHRA 2UXDH 1XNRH 2BL5A 1X4MA 3NCVA 5FLXW 5LMNH 2HH2A 4JV5H 4JVYA 2LTMA 1J5KA 4WANA 2ZQEA 4X62H 4G08A 4BA1I 1HNZH 4JI5H 4K0KH 4IFDG 2CTLA 1XMOH 1MSZA 2JEAI 5C0XG 1EC6A 4AQYH 4DV6H 2YQRA 1XRHA 2LRRA 4JI8H 4DUYH 3J80W 4NZTM 4JVHA 1J5EH 2F4VH 1ZTGA 2CTKA 4LF6H 2X06A 4WALA 2VQFH 4LF7H 2E5LH 1I6UA 2HHHH 2JE6I 1DTJA 2DGRA 4JI7H 2FMRA 2BA0A 5LL6b 5IT9W 4GKJH 4AIMA 4JI0H 4LF8H 2Z0SA 3QD7X 3T1YH 4LIJA 4H8AA 2UUAH 1X4NA 3L7ZC 2CTJA 3UOEA 5A2QW 5IWAH 2P2RA 1X0AA 3GABA 4OX9H 1FKAH 2VQEH 1HNXH 4LF4H 4DR4H 4AM3A 3AEVB 4X66H 4NXMH 1X9ZA 1N34H 2G8YA 1XNQH 4YY3H 1FJGH 2UUBH 4JI2H 2UU9H 4JI3H 2CWFA 5BR8H 2FFMA 2LTLA 4LF5H 4OO1G 2QNDA 4JI4H 1UG8A 1DT4A 1VIHA 2CTEA 3OETA 4DV0H 2AXYA 2E3UA 2UXBH 4DR1H 4LFCH 2NN6G 5JEAG 1Z2IA 4B8CD 3J7AK 1V9NA 3SB1A 1K1GA 1I94H 1WVNA 3KDKA 1HNWH 4B3SH 4DV7H 1KHMA 2JEBI 3T1HH 3FAUA 2OPVA 1ZZKA 3OTOH 1XMQH 4DR2H 4DV3H 1IBKH 1S03G 4BA2I 1V8CA 3U1KA 5LMUH 4OCHA 1HR0H 4LF9H 2FPHX 2M8WA 1J4WA 2PQUA 1PQXA 1NXUA 3RF2A 3JAMW 4DR6H 3EZJA
chains in the Genus database with same CATH topology
2M6QA 2M8WA 2K1HA 1PQXA 2FFMA 2LTLA 2LTMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M6Q A;  2M8W A;  2K1H A;  1PQX A;  2FFM A;  2LTL A;  2LTM A; 
#chains in the Genus database with same CATH topology
 2M6Q A;  2D9I A;  2CPQ A;  3KDG A;  2ANN A;  4B3T H;  3OSS D;  2CTF A;  2JA9 A;  4FJS A;  4EC5 A;  4E9J A;  4B8T A;  1IBM H;  2PT7 G;  4QMF B;  2OPU A;  4JI6 H;  4LFA H;  5DT9 A;  2K1H A;  3J81 W;  2Y3M A;  2CPM A;  4NBQ A;  4DV5 H;  4GKK H;  1WTJ A;  4YHH H;  1VBI A;  4NXN H;  2UUC H;  4KHP H;  4JYA H;  1SEI A;  4DR3 H;  2MJH A;  2PY9 A;  2LF0 A;  4OD6 A;  3I0P A;  4DR5 H;  1ZZI A;  4X64 H;  4DV4 H;  1ODH A;  1TUA A;  2JZX A;  1AN7 A;  2A1S A;  2ANR A;  1WE8 A;  2O4C A;  4FJU A;  4DV2 H;  1N36 H;  2VKC A;  4DR7 H;  1VIG A;  1N33 H;  4PDB A;  4B3M H;  3VKE A;  1ZZJ A;  2HH3 A;  4B3R H;  2CTM A;  4DV1 H;  2CWH A;  2JVZ A;  1S20 A;  4NZR M;  1F0X A;  4X65 H;  2UXC H;  1IBL H;  3GR5 A;  5K36 G;  3GKU A;  4DUZ H;  4JI1 H;  4LFB H;  2ZM6 H;  3V69 A;  1N32 H;  1WHR A;  2UXD H;  1XNR H;  2BL5 A;  1X4M A;  3NCV A;  5FLX W;  5LMN H;  2HH2 A;  4JV5 H;  4JVY A;  2LTM A;  1J5K A;  4WAN A;  2ZQE A;  4X62 H;  4G08 A;  4BA1 I;  1HNZ H;  4JI5 H;  4K0K H;  4IFD G;  2CTL A;  1XMO H;  1MSZ A;  2JEA I;  5C0X G;  1EC6 A;  4AQY H;  4DV6 H;  2YQR A;  1XRH A;  2LRR A;  4JI8 H;  4DUY H;  3J80 W;  4NZT M;  4JVH A;  1J5E H;  2F4V H;  1ZTG A;  2CTK A;  4LF6 H;  2X06 A;  4WAL A;  2VQF H;  4LF7 H;  2E5L H;  1I6U A;  2HHH H;  2JE6 I;  1DTJ A;  2DGR A;  4JI7 H;  2FMR A;  2BA0 A;  5LL6 b;  5IT9 W;  4GKJ H;  4AIM A;  4JI0 H;  4LF8 H;  2Z0S A;  3QD7 X;  3T1Y H;  4LIJ A;  4H8A A;  2UUA H;  1X4N A;  3L7Z C;  2CTJ A;  3UOE A;  5A2Q W;  5IWA H;  2P2R A;  1X0A A;  3GAB A;  4OX9 H;  1FKA H;  2VQE H;  1HNX H;  4LF4 H;  4DR4 H;  4AM3 A;  3AEV B;  4X66 H;  4NXM H;  1X9Z A;  1N34 H;  2G8Y A;  1XNQ H;  4YY3 H;  1FJG H;  2UUB H;  4JI2 H;  2UU9 H;  4JI3 H;  2CWF A;  5BR8 H;  2FFM A;  2LTL A;  4LF5 H;  4OO1 G;  2QND A;  4JI4 H;  1UG8 A;  1DT4 A;  1VIH A;  2CTE A;  3OET A;  4DV0 H;  2AXY A;  2E3U A;  2UXB H;  4DR1 H;  4LFC H;  2NN6 G;  5JEA G;  1Z2I A;  4B8C D;  3J7A K;  1V9N A;  3SB1 A;  1K1G A;  1I94 H;  1WVN A;  3KDK A;  1HNW H;  4B3S H;  4DV7 H;  1KHM A;  2JEB I;  3T1H H;  3FAU A;  2OPV A;  1ZZK A;  3OTO H;  1XMQ H;  4DR2 H;  4DV3 H;  1IBK H;  1S03 G;  4BA2 I;  1V8C A;  3U1K A;  5LMU H;  4OCH A;  1HR0 H;  4LF9 H;  2FPH X;  2M8W A;  1J4W A;  2PQU A;  1PQX A;  1NXU A;  3RF2 A;  3JAM W;  4DR6 H;  3EZJ A; 
#chains in the Genus database with same CATH homology
 2M6Q A;  2M8W A;  2K1H A;  1PQX A;  2FFM A;  2LTL A;  2LTM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...