2FFMA

X-ray crystal structure of protein sav1430 from staphylococcus aureus. northeast structural genomics consortium target zr18.
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
83
structure length
83
Chain Sequence
MKIISISETPNHNTMKITLSESREGMTSDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAVFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords SAV1430
publication title Crystal Structure of the Hypothetical Protein SAV1430 from Staphylococcus aureus, Northeast Structural Genomics ZR18.
rcsb
source organism Staphylococcus aureus subsp. aureus mu50
total genus 15
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2005-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08712 Nfu_N Scaffold protein Nfu/NifU N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Scaffold protein Nfu/NifU, N-terminal domain 2ffmA00
2LTMA 2LTLA 2M6QA 2FFMA 2K1HA 2M8WA 1PQXA
chains in the Genus database with same CATH superfamily
4OCHA 4NZTM 2X06A 2FFMA 1Z2IA 1J4WA 1IBLH 4LFAH 1ZTGA 1N33H 2HHHH 4LF7H 2JZXA 4FJUA 1X4NA 4DV6H 2P2RA 1X4MA 1N36H 4LFBH 5LMUH 1HNZH 2LTMA 2FMRA 4IFDG 4EC5A 1S20A 1WHRA 2G8YA 4QMFB 3SB1A 2UXBH 4DV3H 2BA0A 5BR8H 4X66H 1HNWH 2PQUA 1VIGA 2LRRA 4BA2I 4NXMH 4LF8H 1I6UA 1I94H 4X65H 2HH2A 1XRHA 2CTJA 2D9IA 1EC6A 4DR6H 2UXCH 4DUYH 2DGRA 2E3UA 2Y3MA 2M8WA 3OSSD 5FLXW 5IWAH 2CTEA 2VQEH 4AQYH 4JI3H 4DR1H 2F4VH 2ZM6H 4OO1G 2CPQA 3T1YH 3NCVA 4DV5H 2E5LH 4JI8H 2CTFA 3QD7X 3RF2A 1NXUA 1AN7A 4LF5H 4NXNH 3GABA 4X64H 4DV7H 3OTOH 2CTMA 1WVNA 3OETA 4LIJA 4WALA 4JI2H 2ZQEA 1X0AA 5IT9W 4E9JA 4JI5H 2VQFH 2A1SA 4GKJH 2OPUA 1IBKH 2JVZA 2NN6G 1ZZIA 1DTJA 2JA9A 1K1GA 2PT7G 1N34H 3JAMW 1HNXH 4JVYA 3UOEA 2VKCA 3J81W 5C0XG 2OPVA 2QNDA 3KDKA 4JI4H 1KHMA 1S03G 5DT9A 4B3SH 3AEVB 4GKKH 2BL5A 2CTLA 1HR0H 4LF4H 1VBIA 1FKAH 2HH3A 1TUAA 5K36G 4DR7H 4JI0H 4DV4H 1MSZA 4PDBA 4B8CD 2K1HA 5LL6b 2CPMA 4DV1H 4YY3H 1SEIA 2LTLA 4OD6A 2JEAI 2UUBH 3T1HH 3V69A 1ODHA 3L7ZC 4LF6H 2JEBI 4DV0H 1WTJA 4OX9H 2JE6I 4DR4H 4DR5H 4JI7H 3J80W 4JI1H 4DV2H 1XMQH 1VIHA 5A2QW 2ANRA 3GR5A 1WE8A 4JVHA 3KDGA 2M6QA 2MJHA 4JYAH 1V8CA 1XNQH 3I0PA 2CWFA 4DR2H 2UUCH 2CWHA 1XNRH 1ZZJA 4B8TA 2CTKA 2UUAH 5JEAG 1FJGH 4LFCH 3EZJA 4G08A 1V9NA 2UXDH 4BA1I 2Z0SA 4DUZH 1UG8A 1PQXA 1ZZKA 4NZRM 4AIMA 4NBQA 2PY9A 4KHPH 3GKUA 2UU9H 1F0XA 4X62H 4JI6H 1N32H 2O4CA 4DR3H 4FJSA 4B3TH 1DT4A 4WANA 3VKEA 4H8AA 1J5EH 2YQRA 4B3RH 2LF0A 4YHHH 1X9ZA 1IBMH 4AM3A 2ANNA 3FAUA 1J5KA 4B3MH 3U1KA 5LMNH 3J7AK 2FPHX 4JV5H 4K0KH 2AXYA 1XMOH 4LF9H
chains in the Genus database with same CATH topology
2LTMA 2LTLA 2M6QA 2FFMA 2K1HA 2M8WA 1PQXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LTM A;  2LTL A;  2M6Q A;  2FFM A;  2K1H A;  2M8W A;  1PQX A; 
#chains in the Genus database with same CATH topology
 4OCH A;  4NZT M;  2X06 A;  2FFM A;  1Z2I A;  1J4W A;  1IBL H;  4LFA H;  1ZTG A;  1N33 H;  2HHH H;  4LF7 H;  2JZX A;  4FJU A;  1X4N A;  4DV6 H;  2P2R A;  1X4M A;  1N36 H;  4LFB H;  5LMU H;  1HNZ H;  2LTM A;  2FMR A;  4IFD G;  4EC5 A;  1S20 A;  1WHR A;  2G8Y A;  4QMF B;  3SB1 A;  2UXB H;  4DV3 H;  2BA0 A;  5BR8 H;  4X66 H;  1HNW H;  2PQU A;  1VIG A;  2LRR A;  4BA2 I;  4NXM H;  4LF8 H;  1I6U A;  1I94 H;  4X65 H;  2HH2 A;  1XRH A;  2CTJ A;  2D9I A;  1EC6 A;  4DR6 H;  2UXC H;  4DUY H;  2DGR A;  2E3U A;  2Y3M A;  2M8W A;  3OSS D;  5FLX W;  5IWA H;  2CTE A;  2VQE H;  4AQY H;  4JI3 H;  4DR1 H;  2F4V H;  2ZM6 H;  4OO1 G;  2CPQ A;  3T1Y H;  3NCV A;  4DV5 H;  2E5L H;  4JI8 H;  2CTF A;  3QD7 X;  3RF2 A;  1NXU A;  1AN7 A;  4LF5 H;  4NXN H;  3GAB A;  4X64 H;  4DV7 H;  3OTO H;  2CTM A;  1WVN A;  3OET A;  4LIJ A;  4WAL A;  4JI2 H;  2ZQE A;  1X0A A;  5IT9 W;  4E9J A;  4JI5 H;  2VQF H;  2A1S A;  4GKJ H;  2OPU A;  1IBK H;  2JVZ A;  2NN6 G;  1ZZI A;  1DTJ A;  2JA9 A;  1K1G A;  2PT7 G;  1N34 H;  3JAM W;  1HNX H;  4JVY A;  3UOE A;  2VKC A;  3J81 W;  5C0X G;  2OPV A;  2QND A;  3KDK A;  4JI4 H;  1KHM A;  1S03 G;  5DT9 A;  4B3S H;  3AEV B;  4GKK H;  2BL5 A;  2CTL A;  1HR0 H;  4LF4 H;  1VBI A;  1FKA H;  2HH3 A;  1TUA A;  5K36 G;  4DR7 H;  4JI0 H;  4DV4 H;  1MSZ A;  4PDB A;  4B8C D;  2K1H A;  5LL6 b;  2CPM A;  4DV1 H;  4YY3 H;  1SEI A;  2LTL A;  4OD6 A;  2JEA I;  2UUB H;  3T1H H;  3V69 A;  1ODH A;  3L7Z C;  4LF6 H;  2JEB I;  4DV0 H;  1WTJ A;  4OX9 H;  2JE6 I;  4DR4 H;  4DR5 H;  4JI7 H;  3J80 W;  4JI1 H;  4DV2 H;  1XMQ H;  1VIH A;  5A2Q W;  2ANR A;  3GR5 A;  1WE8 A;  4JVH A;  3KDG A;  2M6Q A;  2MJH A;  4JYA H;  1V8C A;  1XNQ H;  3I0P A;  2CWF A;  4DR2 H;  2UUC H;  2CWH A;  1XNR H;  1ZZJ A;  4B8T A;  2CTK A;  2UUA H;  5JEA G;  1FJG H;  4LFC H;  3EZJ A;  4G08 A;  1V9N A;  2UXD H;  4BA1 I;  2Z0S A;  4DUZ H;  1UG8 A;  1PQX A;  1ZZK A;  4NZR M;  4AIM A;  4NBQ A;  2PY9 A;  4KHP H;  3GKU A;  2UU9 H;  1F0X A;  4X62 H;  4JI6 H;  1N32 H;  2O4C A;  4DR3 H;  4FJS A;  4B3T H;  1DT4 A;  4WAN A;  3VKE A;  4H8A A;  1J5E H;  2YQR A;  4B3R H;  2LF0 A;  4YHH H;  1X9Z A;  1IBM H;  4AM3 A;  2ANN A;  3FAU A;  1J5K A;  4B3M H;  3U1K A;  5LMN H;  3J7A K;  2FPH X;  4JV5 H;  4K0K H;  2AXY A;  1XMO H;  4LF9 H; 
#chains in the Genus database with same CATH homology
 2LTM A;  2LTL A;  2M6Q A;  2FFM A;  2K1H A;  2M8W A;  1PQX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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