2CTEA

Solution structure of the 1st kh type i domain from human vigilin
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
94
structure length
94
Chain Sequence
GSSGSSGDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQDKRSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Vigilin
publication title Solution structure of the 1st KH type I domain from human Vigilin
rcsb
source organism Homo sapiens
molecule tags Transport protein
total genus 17
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2005-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2cteA01
1VIGA 4LIJA 4BA2I 5K36G 1K1GA 2PY9A 1KHMA 4AM3A 2OPUA 2P2RA 1WVNA 2E3UA 2JE6I 2AXYA 2ANRA 4QMFB 2JEBI 5JEAG 1ZTGA 2OPVA 3VKEA 2JZXA 2CTLA 1DT4A 2CTKA 3L7ZC 2BA0A 4JVHA 2BL5A 1ZZKA 1ZZJA 1J4WA 2QNDA 2NN6G 2JEAI 2HH2A 2PQUA 4JVYA 4AIMA 2CPQA 1VIHA 1TUAA 2Z0SA 4BA1I 1X4MA 2ANNA 4IFDG 4NBQA 2CTJA 2JVZA 4B8TA 2CTMA 1ZZIA 1J5KA 2MJHA 2CTFA 2FMRA 1EC6A 3V69A 3AEVB 2DGRA 2HH3A 2JA9A 3U1KA 4WANA 1WE8A 1X4NA 4OO1G 2CTEA 1DTJA 2YQRA 5C0XG 4WALA
chains in the Genus database with same CATH superfamily
4DV0H 1VIGA 4DV4H 4LF9H 1I6UA 1VBIA 2LTLA 2PY9A 2K1HA 4DUYH 2OPUA 4DV7H 1HNWH 4B3MH 4AM3A 4YY3H 4FJUA 2UXCH 3T1YH 4NXNH 1UG8A 1SEIA 1PQXA 2JEBI 4JVYA 2OPVA 4DR3H 2JZXA 3VKEA 4JI1H 5IWAH 4X66H 4JVHA 1S03G 1ZZKA 1J4WA 3EZJA 2PQUA 1XNQH 4AIMA 1IBKH 2CPQA 4X64H 2CWHA 3J81W 1MSZA 4DV5H 4B3SH 2FPHX 2Y3MA 4DR6H 1J5KA 4AQYH 1ODHA 2UXBH 1NXUA 4LF7H 1S20A 1V9NA 2JA9A 1DTJA 2YQRA 2MJHA 4LF8H 2G8YA 4KHPH 2E5LH 1N32H 4JI5H 4H8AA 3RF2A 2E3UA 2VQFH 4DR1H 3OTOH 5LMUH 5JEAG 1X9ZA 2LF0A 4YHHH 4B3RH 4DR2H 1X0AA 3L7ZC 2CTKA 3OSSD 4FJSA 4JI2H 3UOEA 2M6QA 1IBMH 4LFBH 2UUBH 5BR8H 1IBLH 2UXDH 5FLXW 4GKKH 1VIHA 2ANNA 3GR5A 4IFDG 4B8TA 3NCVA 4G08A 2CTFA 4OD6A 4JYAH 4JI4H 4DV2H 2VKCA 3JAMW 2NN6G 4X65H 4OCHA 4DR5H 4DR4H 4WALA 2O4CA 4BA2I 1K1GA 4X62H 1V8CA 2A1SA 4NZTM 4LFCH 4OX9H 4GKJH 2P2RA 1WVNA 1F0XA 1J5EH 2JE6I 2UUCH 4DUZH 4JI0H 5LMNH 2CPMA 2HHHH 4JV5H 2BA0A 3KDKA 3GKUA 1Z2IA 3J80W 2VQEH 1XMOH 1FKAH 2ZQEA 1I94H 4JI7H 3OETA 3QD7X 1TUAA 3J7AK 4LF4H 4NBQA 1XRHA 4K0KH 2JVZA 4LFAH 2PT7G 2FMRA 4E9JA 4DV1H 3V69A 1XMQH 2UU9H 3AEVB 1HNZH 3U1KA 5A2QW 1WE8A 1X4NA 4B8CD 2CTEA 3I0PA 3FAUA 4LF5H 4NXMH 1N33H 4LIJA 2LTMA 5K36G 3SB1A 4NZRM 1KHMA 4B3TH 2F4VH 1N36H 2D9IA 2AXYA 5LL6b 2M8WA 2ANRA 3GABA 1FJGH 4QMFB 1ZTGA 2X06A 1WTJA 2CWFA 2CTLA 1DT4A 2FFMA 4DR7H 5IT9W 2BL5A 4PDBA 1WHRA 4WANA 1ZZJA 2LRRA 2JEAI 2QNDA 2HH2A 2Z0SA 4BA1I 1X4MA 1XNRH 1HNXH 5DT9A 1AN7A 2CTJA 2ZM6H 4DV6H 2CTMA 1ZZIA 2UUAH 3T1HH 3KDGA 1EC6A 1N34H 4JI3H 4JI8H 4JI6H 2DGRA 2HH3A 4LF6H 1HR0H 4OO1G 4DV3H 5C0XG 4EC5A
chains in the Genus database with same CATH topology
1VIGA 4LIJA 4BA2I 5K36G 1K1GA 2PY9A 1KHMA 4AM3A 2OPUA 2P2RA 1WVNA 2E3UA 2JE6I 2AXYA 2ANRA 4QMFB 2JEBI 5JEAG 1ZTGA 2OPVA 3VKEA 2JZXA 2CTLA 1DT4A 2CTKA 3L7ZC 2BA0A 4JVHA 2BL5A 1ZZKA 1ZZJA 1J4WA 2QNDA 2NN6G 2JEAI 2HH2A 2PQUA 4JVYA 4AIMA 2CPQA 1VIHA 1TUAA 2Z0SA 4BA1I 1X4MA 2ANNA 4IFDG 4NBQA 2CTJA 2JVZA 4B8TA 2CTMA 1ZZIA 1J5KA 2MJHA 2CTFA 2FMRA 1EC6A 3V69A 3AEVB 2DGRA 2HH3A 2JA9A 3U1KA 4WANA 1WE8A 1X4NA 4OO1G 2CTEA 1DTJA 2YQRA 5C0XG 4WALA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VIG A;  4LIJ A;  4BA2 I;  5K36 G;  1K1G A;  2PY9 A;  1KHM A;  4AM3 A;  2OPU A;  2P2R A;  1WVN A;  2E3U A;  2JE6 I;  2AXY A;  2ANR A;  4QMF B;  2JEB I;  5JEA G;  1ZTG A;  2OPV A;  3VKE A;  2JZX A;  2CTL A;  1DT4 A;  2CTK A;  3L7Z C;  2BA0 A;  4JVH A;  2BL5 A;  1ZZK A;  1ZZJ A;  1J4W A;  2QND A;  2NN6 G;  2JEA I;  2HH2 A;  2PQU A;  4JVY A;  4AIM A;  2CPQ A;  1VIH A;  1TUA A;  2Z0S A;  4BA1 I;  1X4M A;  2ANN A;  4IFD G;  4NBQ A;  2CTJ A;  2JVZ A;  4B8T A;  2CTM A;  1ZZI A;  1J5K A;  2MJH A;  2CTF A;  2FMR A;  1EC6 A;  3V69 A;  3AEV B;  2DGR A;  2HH3 A;  2JA9 A;  3U1K A;  4WAN A;  1WE8 A;  1X4N A;  4OO1 G;  2CTE A;  1DTJ A;  2YQR A;  5C0X G;  4WAL A; 
#chains in the Genus database with same CATH topology
 4DV0 H;  1VIG A;  4DV4 H;  4LF9 H;  1I6U A;  1VBI A;  2LTL A;  2PY9 A;  2K1H A;  4DUY H;  2OPU A;  4DV7 H;  1HNW H;  4B3M H;  4AM3 A;  4YY3 H;  4FJU A;  2UXC H;  3T1Y H;  4NXN H;  1UG8 A;  1SEI A;  1PQX A;  2JEB I;  4JVY A;  2OPV A;  4DR3 H;  2JZX A;  3VKE A;  4JI1 H;  5IWA H;  4X66 H;  4JVH A;  1S03 G;  1ZZK A;  1J4W A;  3EZJ A;  2PQU A;  1XNQ H;  4AIM A;  1IBK H;  2CPQ A;  4X64 H;  2CWH A;  3J81 W;  1MSZ A;  4DV5 H;  4B3S H;  2FPH X;  2Y3M A;  4DR6 H;  1J5K A;  4AQY H;  1ODH A;  2UXB H;  1NXU A;  4LF7 H;  1S20 A;  1V9N A;  2JA9 A;  1DTJ A;  2YQR A;  2MJH A;  4LF8 H;  2G8Y A;  4KHP H;  2E5L H;  1N32 H;  4JI5 H;  4H8A A;  3RF2 A;  2E3U A;  2VQF H;  4DR1 H;  3OTO H;  5LMU H;  5JEA G;  1X9Z A;  2LF0 A;  4YHH H;  4B3R H;  4DR2 H;  1X0A A;  3L7Z C;  2CTK A;  3OSS D;  4FJS A;  4JI2 H;  3UOE A;  2M6Q A;  1IBM H;  4LFB H;  2UUB H;  5BR8 H;  1IBL H;  2UXD H;  5FLX W;  4GKK H;  1VIH A;  2ANN A;  3GR5 A;  4IFD G;  4B8T A;  3NCV A;  4G08 A;  2CTF A;  4OD6 A;  4JYA H;  4JI4 H;  4DV2 H;  2VKC A;  3JAM W;  2NN6 G;  4X65 H;  4OCH A;  4DR5 H;  4DR4 H;  4WAL A;  2O4C A;  4BA2 I;  1K1G A;  4X62 H;  1V8C A;  2A1S A;  4NZT M;  4LFC H;  4OX9 H;  4GKJ H;  2P2R A;  1WVN A;  1F0X A;  1J5E H;  2JE6 I;  2UUC H;  4DUZ H;  4JI0 H;  5LMN H;  2CPM A;  2HHH H;  4JV5 H;  2BA0 A;  3KDK A;  3GKU A;  1Z2I A;  3J80 W;  2VQE H;  1XMO H;  1FKA H;  2ZQE A;  1I94 H;  4JI7 H;  3OET A;  3QD7 X;  1TUA A;  3J7A K;  4LF4 H;  4NBQ A;  1XRH A;  4K0K H;  2JVZ A;  4LFA H;  2PT7 G;  2FMR A;  4E9J A;  4DV1 H;  3V69 A;  1XMQ H;  2UU9 H;  3AEV B;  1HNZ H;  3U1K A;  5A2Q W;  1WE8 A;  1X4N A;  4B8C D;  2CTE A;  3I0P A;  3FAU A;  4LF5 H;  4NXM H;  1N33 H;  4LIJ A;  2LTM A;  5K36 G;  3SB1 A;  4NZR M;  1KHM A;  4B3T H;  2F4V H;  1N36 H;  2D9I A;  2AXY A;  5LL6 b;  2M8W A;  2ANR A;  3GAB A;  1FJG H;  4QMF B;  1ZTG A;  2X06 A;  1WTJ A;  2CWF A;  2CTL A;  1DT4 A;  2FFM A;  4DR7 H;  5IT9 W;  2BL5 A;  4PDB A;  1WHR A;  4WAN A;  1ZZJ A;  2LRR A;  2JEA I;  2QND A;  2HH2 A;  2Z0S A;  4BA1 I;  1X4M A;  1XNR H;  1HNX H;  5DT9 A;  1AN7 A;  2CTJ A;  2ZM6 H;  4DV6 H;  2CTM A;  1ZZI A;  2UUA H;  3T1H H;  3KDG A;  1EC6 A;  1N34 H;  4JI3 H;  4JI8 H;  4JI6 H;  2DGR A;  2HH3 A;  4LF6 H;  1HR0 H;  4OO1 G;  4DV3 H;  5C0X G;  4EC5 A; 
#chains in the Genus database with same CATH homology
 1VIG A;  4LIJ A;  4BA2 I;  5K36 G;  1K1G A;  2PY9 A;  1KHM A;  4AM3 A;  2OPU A;  2P2R A;  1WVN A;  2E3U A;  2JE6 I;  2AXY A;  2ANR A;  4QMF B;  2JEB I;  5JEA G;  1ZTG A;  2OPV A;  3VKE A;  2JZX A;  2CTL A;  1DT4 A;  2CTK A;  3L7Z C;  2BA0 A;  4JVH A;  2BL5 A;  1ZZK A;  1ZZJ A;  1J4W A;  2QND A;  2NN6 G;  2JEA I;  2HH2 A;  2PQU A;  4JVY A;  4AIM A;  2CPQ A;  1VIH A;  1TUA A;  2Z0S A;  4BA1 I;  1X4M A;  2ANN A;  4IFD G;  4NBQ A;  2CTJ A;  2JVZ A;  4B8T A;  2CTM A;  1ZZI A;  1J5K A;  2MJH A;  2CTF A;  2FMR A;  1EC6 A;  3V69 A;  3AEV B;  2DGR A;  2HH3 A;  2JA9 A;  3U1K A;  4WAN A;  1WE8 A;  1X4N A;  4OO1 G;  2CTE A;  1DTJ A;  2YQR A;  5C0X G;  4WAL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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