2CTEA

Solution structure of the 1st kh type i domain from human vigilin
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
94
structure length
94
Chain Sequence
GSSGSSGDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQDKRSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Homo sapiens
publication title Solution structure of the 1st KH type I domain from human Vigilin
rcsb
molecule keywords Vigilin
total genus 17
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2005-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2cteA01
2BA0A 1VIHA 1WVNA 4B8TA 1K1GA 1ZTGA 2P2RA 1ZZJA 2HH2A 2DGRA 1ZZIA 4JVHA 3U1KA 5K36G 2JA9A 2PQUA 2CTFA 4AIMA 3V69A 2CTEA 2BL5A 2ANRA 5C0XG 2ANNA 4QMFB 2JZXA 2OPVA 1WE8A 4AM3A 1TUAA 1DT4A 2YQRA 4BA1I 2AXYA 3L7ZC 3AEVB 2PY9A 2CPQA 4IFDG 5JEAG 4OO1G 2JEBI 2CTMA 2JVZA 2MJHA 2OPUA 2CTLA 2QNDA 4LIJA 4BA2I 4JVYA 1VIGA 3VKEA 1X4MA 1KHMA 2E3UA 1ZZKA 1X4NA 1J4WA 2Z0SA 2JE6I 2HH3A 4WALA 2JEAI 1EC6A 4WANA 2NN6G 2CTKA 4NBQA 1J5KA 2FMRA 1DTJA 2CTJA
chains in the Genus database with same CATH superfamily
4JI0H 1VIHA 1K1GA 1ZTGA 4LF4H 2DGRA 1ZZIA 4LF9H 4LF7H 5K36G 3J81W 2E5LH 4OCHA 1HNZH 2UXBH 3NCVA 5C0XG 1IBKH 4QMFB 4H8AA 1N36H 1WE8A 2AXYA 4JI1H 1SEIA 1Z2IA 2UXDH 4LF8H 4DV0H 2JVZA 3I0PA 1I6UA 3QD7X 4DR4H 3FAUA 4YHHH 4JVYA 1VIGA 1X4MA 4JV5H 4X65H 5FLXW 1X4NA 1ZZKA 2ZM6H 2JEAI 5DT9A 4X62H 4LF6H 4LFCH 3T1HH 2BA0A 1WVNA 4PDBA 2LRRA 4DV2H 5IT9W 2G8YA 1ZZJA 4DV1H 3OETA 3U1KA 1X0AA 4EC5A 2PQUA 1V8CA 1I94H 4K0KH 2BL5A 2ANRA 2O4CA 2LF0A 2JZXA 1XRHA 4FJUA 4DUYH 4FJSA 1IBLH 4B3RH 3GR5A 4BA1I 2X06A 2CWFA 3L7ZC 1S03G 4B3SH 4LFAH 2PY9A 4JI6H 3AEVB 5JEAG 4IFDG 2VKCA 4DV4H 2MJHA 2OPUA 4GKJH 2CTLA 4B3MH 1HNXH 4DR6H 3VKEA 2K1HA 4JI3H 4NZTM 1N32H 4AQYH 3KDGA 2D9IA 4OD6A 3EZJA 1EC6A 2LTMA 4WANA 2M6QA 1N34H 3JAMW 2FMRA 2PT7G 5IWAH 2P2RA 4B8TA 4X64H 4NXMH 2HH2A 4DUZH 3SB1A 1F0XA 2FFMA 5LL6b 2CTFA 4KHPH 4DR2H 2CTEA 1HR0H 4DV6H 2CWHA 2ANNA 1FJGH 4B8CD 4B3TH 4AM3A 1TUAA 1DT4A 1NXUA 2YQRA 2UUBH 2UU9H 4JI5H 1S20A 2CPQA 2VQFH 2CTMA 1WTJA 1FKAH 4X66H 4BA2I 5LMNH 3J80W 1AN7A 2E3UA 1ODHA 2HHHH 4NXNH 2JE6I 4LF5H 2HH3A 4NZRM 4WALA 2LTLA 2UUAH 2ZQEA 3GKUA 5BR8H 2CTKA 4NBQA 2Y3MA 1HNWH 1XNRH 2CTJA 4JI2H 1V9NA 4JYAH 4DV7H 4E9JA 1XMOH 4JVHA 2JA9A 3KDKA 4DR5H 4OX9H 4AIMA 3V69A 4GKKH 4JI8H 2OPVA 2VQEH 1XMQH 1N33H 4G08A 2CPMA 1IBMH 4OO1G 2JEBI 3OTOH 4JI4H 4YY3H 4DR1H 3RF2A 4DR3H 2QNDA 4LIJA 1VBIA 1X9ZA 5A2QW 1WHRA 1PQXA 2M8WA 4DR7H 1KHMA 3GABA 4JI7H 4DV3H 3T1YH 2UXCH 1J4WA 1UG8A 2Z0SA 4DV5H 2F4VH 2NN6G 2A1SA 1J5EH 5LMUH 1XNQH 1MSZA 2FPHX 4LFBH 3J7AK 1J5KA 3OSSD 2UUCH 3UOEA 1DTJA
chains in the Genus database with same CATH topology
2BA0A 1VIHA 1WVNA 4B8TA 1K1GA 1ZTGA 2P2RA 1ZZJA 2HH2A 2DGRA 1ZZIA 4JVHA 3U1KA 5K36G 2JA9A 2PQUA 2CTFA 4AIMA 3V69A 2CTEA 2BL5A 2ANRA 5C0XG 2ANNA 4QMFB 2JZXA 2OPVA 1WE8A 4AM3A 1TUAA 1DT4A 2YQRA 4BA1I 2AXYA 3L7ZC 3AEVB 2PY9A 2CPQA 4IFDG 5JEAG 4OO1G 2JEBI 2CTMA 2JVZA 2MJHA 2OPUA 2CTLA 2QNDA 4LIJA 4BA2I 4JVYA 1VIGA 3VKEA 1X4MA 1KHMA 2E3UA 1ZZKA 1X4NA 1J4WA 2Z0SA 2JE6I 2HH3A 4WALA 2JEAI 1EC6A 4WANA 2NN6G 2CTKA 4NBQA 1J5KA 2FMRA 1DTJA 2CTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BA0 A;  1VIH A;  1WVN A;  4B8T A;  1K1G A;  1ZTG A;  2P2R A;  1ZZJ A;  2HH2 A;  2DGR A;  1ZZI A;  4JVH A;  3U1K A;  5K36 G;  2JA9 A;  2PQU A;  2CTF A;  4AIM A;  3V69 A;  2CTE A;  2BL5 A;  2ANR A;  5C0X G;  2ANN A;  4QMF B;  2JZX A;  2OPV A;  1WE8 A;  4AM3 A;  1TUA A;  1DT4 A;  2YQR A;  4BA1 I;  2AXY A;  3L7Z C;  3AEV B;  2PY9 A;  2CPQ A;  4IFD G;  5JEA G;  4OO1 G;  2JEB I;  2CTM A;  2JVZ A;  2MJH A;  2OPU A;  2CTL A;  2QND A;  4LIJ A;  4BA2 I;  4JVY A;  1VIG A;  3VKE A;  1X4M A;  1KHM A;  2E3U A;  1ZZK A;  1X4N A;  1J4W A;  2Z0S A;  2JE6 I;  2HH3 A;  4WAL A;  2JEA I;  1EC6 A;  4WAN A;  2NN6 G;  2CTK A;  4NBQ A;  1J5K A;  2FMR A;  1DTJ A;  2CTJ A; 
#chains in the Genus database with same CATH topology
 4JI0 H;  1VIH A;  1K1G A;  1ZTG A;  4LF4 H;  2DGR A;  1ZZI A;  4LF9 H;  4LF7 H;  5K36 G;  3J81 W;  2E5L H;  4OCH A;  1HNZ H;  2UXB H;  3NCV A;  5C0X G;  1IBK H;  4QMF B;  4H8A A;  1N36 H;  1WE8 A;  2AXY A;  4JI1 H;  1SEI A;  1Z2I A;  2UXD H;  4LF8 H;  4DV0 H;  2JVZ A;  3I0P A;  1I6U A;  3QD7 X;  4DR4 H;  3FAU A;  4YHH H;  4JVY A;  1VIG A;  1X4M A;  4JV5 H;  4X65 H;  5FLX W;  1X4N A;  1ZZK A;  2ZM6 H;  2JEA I;  5DT9 A;  4X62 H;  4LF6 H;  4LFC H;  3T1H H;  2BA0 A;  1WVN A;  4PDB A;  2LRR A;  4DV2 H;  5IT9 W;  2G8Y A;  1ZZJ A;  4DV1 H;  3OET A;  3U1K A;  1X0A A;  4EC5 A;  2PQU A;  1V8C A;  1I94 H;  4K0K H;  2BL5 A;  2ANR A;  2O4C A;  2LF0 A;  2JZX A;  1XRH A;  4FJU A;  4DUY H;  4FJS A;  1IBL H;  4B3R H;  3GR5 A;  4BA1 I;  2X06 A;  2CWF A;  3L7Z C;  1S03 G;  4B3S H;  4LFA H;  2PY9 A;  4JI6 H;  3AEV B;  5JEA G;  4IFD G;  2VKC A;  4DV4 H;  2MJH A;  2OPU A;  4GKJ H;  2CTL A;  4B3M H;  1HNX H;  4DR6 H;  3VKE A;  2K1H A;  4JI3 H;  4NZT M;  1N32 H;  4AQY H;  3KDG A;  2D9I A;  4OD6 A;  3EZJ A;  1EC6 A;  2LTM A;  4WAN A;  2M6Q A;  1N34 H;  3JAM W;  2FMR A;  2PT7 G;  5IWA H;  2P2R A;  4B8T A;  4X64 H;  4NXM H;  2HH2 A;  4DUZ H;  3SB1 A;  1F0X A;  2FFM A;  5LL6 b;  2CTF A;  4KHP H;  4DR2 H;  2CTE A;  1HR0 H;  4DV6 H;  2CWH A;  2ANN A;  1FJG H;  4B8C D;  4B3T H;  4AM3 A;  1TUA A;  1DT4 A;  1NXU A;  2YQR A;  2UUB H;  2UU9 H;  4JI5 H;  1S20 A;  2CPQ A;  2VQF H;  2CTM A;  1WTJ A;  1FKA H;  4X66 H;  4BA2 I;  5LMN H;  3J80 W;  1AN7 A;  2E3U A;  1ODH A;  2HHH H;  4NXN H;  2JE6 I;  4LF5 H;  2HH3 A;  4NZR M;  4WAL A;  2LTL A;  2UUA H;  2ZQE A;  3GKU A;  5BR8 H;  2CTK A;  4NBQ A;  2Y3M A;  1HNW H;  1XNR H;  2CTJ A;  4JI2 H;  1V9N A;  4JYA H;  4DV7 H;  4E9J A;  1XMO H;  4JVH A;  2JA9 A;  3KDK A;  4DR5 H;  4OX9 H;  4AIM A;  3V69 A;  4GKK H;  4JI8 H;  2OPV A;  2VQE H;  1XMQ H;  1N33 H;  4G08 A;  2CPM A;  1IBM H;  4OO1 G;  2JEB I;  3OTO H;  4JI4 H;  4YY3 H;  4DR1 H;  3RF2 A;  4DR3 H;  2QND A;  4LIJ A;  1VBI A;  1X9Z A;  5A2Q W;  1WHR A;  1PQX A;  2M8W A;  4DR7 H;  1KHM A;  3GAB A;  4JI7 H;  4DV3 H;  3T1Y H;  2UXC H;  1J4W A;  1UG8 A;  2Z0S A;  4DV5 H;  2F4V H;  2NN6 G;  2A1S A;  1J5E H;  5LMU H;  1XNQ H;  1MSZ A;  2FPH X;  4LFB H;  3J7A K;  1J5K A;  3OSS D;  2UUC H;  3UOE A;  1DTJ A; 
#chains in the Genus database with same CATH homology
 2BA0 A;  1VIH A;  1WVN A;  4B8T A;  1K1G A;  1ZTG A;  2P2R A;  1ZZJ A;  2HH2 A;  2DGR A;  1ZZI A;  4JVH A;  3U1K A;  5K36 G;  2JA9 A;  2PQU A;  2CTF A;  4AIM A;  3V69 A;  2CTE A;  2BL5 A;  2ANR A;  5C0X G;  2ANN A;  4QMF B;  2JZX A;  2OPV A;  1WE8 A;  4AM3 A;  1TUA A;  1DT4 A;  2YQR A;  4BA1 I;  2AXY A;  3L7Z C;  3AEV B;  2PY9 A;  2CPQ A;  4IFD G;  5JEA G;  4OO1 G;  2JEB I;  2CTM A;  2JVZ A;  2MJH A;  2OPU A;  2CTL A;  2QND A;  4LIJ A;  4BA2 I;  4JVY A;  1VIG A;  3VKE A;  1X4M A;  1KHM A;  2E3U A;  1ZZK A;  1X4N A;  1J4W A;  2Z0S A;  2JE6 I;  2HH3 A;  4WAL A;  2JEA I;  1EC6 A;  4WAN A;  2NN6 G;  2CTK A;  4NBQ A;  1J5K A;  2FMR A;  1DTJ A;  2CTJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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