2CTEA

Solution structure of the 1st kh type i domain from human vigilin
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
94
structure length
94
Chain Sequence
GSSGSSGDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQDKRSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Vigilin
publication title Solution structure of the 1st KH type I domain from human Vigilin
rcsb
source organism Homo sapiens
total genus 17
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2005-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2cteA01
3VKEA 4WANA 2CTEA 1VIGA 2OPUA 1WVNA 3V69A 4BA1I 2JE6I 1ZZKA 1J4WA 2PY9A 2BL5A 2JEBI 2OPVA 1ZZJA 2QNDA 4JVYA 2NN6G 4AM3A 2CTMA 2Z0SA 1DTJA 2P2RA 2JA9A 4QMFB 1ZZIA 2ANRA 4JVHA 1EC6A 1KHMA 5K36G 2CTKA 4AIMA 1K1GA 1X4MA 3AEVB 3L7ZC 2PQUA 1X4NA 1J5KA 2JEAI 4OO1G 2HH2A 2MJHA 1WE8A 2JZXA 4WALA 2CTFA 2HH3A 2JVZA 4B8TA 2BA0A 2ANNA 4IFDG 4NBQA 5JEAG 4LIJA 2YQRA 1VIHA 2E3UA 3U1KA 1ZTGA 2DGRA 4BA2I 2FMRA 1TUAA 5C0XG 1DT4A 2CPQA 2CTJA 2CTLA 2AXYA
chains in the Genus database with same CATH superfamily
1HNWH 4B8CD 4BA1I 3OETA 2UU9H 4B3SH 4LFAH 1X9ZA 1N33H 2PY9A 2PT7G 4YHHH 4AM3A 2CTMA 2P2RA 4JI4H 2ANRA 2G8YA 1V8CA 4JI2H 4DR2H 1EC6A 2UXCH 1KHMA 4FJUA 2VQFH 5K36G 4NXMH 3AEVB 4X64H 4JI1H 4LF8H 4DR6H 1N36H 1WE8A 2K1HA 2M8WA 4JI8H 4LF9H 3GR5A 5LMNH 1F0XA 1XNRH 2FFMA 4DR1H 1XMOH 2DGRA 2LTLA 4DV2H 5C0XG 3UOEA 1FKAH 1DT4A 4LF7H 2CPQA 2UUBH 4G08A 2CTLA 3VKEA 4WANA 1IBMH 2OPUA 4NZTM 1WVNA 4JI0H 4B3RH 1V9NA 1WTJA 1NXUA 1ZZKA 2UUAH 4K0KH 4LFBH 2BL5A 2QNDA 2VKCA 4NZRM 4LFCH 2NN6G 1XMQH 4OCHA 3RF2A 5DT9A 4QMFB 4EC5A 4DR7H 2CWFA 1UG8A 3GABA 4DV5H 1J5KA 2CWHA 3I0PA 1J5EH 2HH2A 5A2QW 4JYAH 2MJHA 2A1SA 2JZXA 2CTFA 2HH3A 3QD7X 4WALA 4DV1H 4DR3H 2HHHH 2ZM6H 2ANNA 5LL6b 4DV6H 2CPMA 5IT9W 3JAMW 1VBIA 2E3UA 2LTMA 2VQEH 1ZTGA 3OSSD 4B3TH 4OX9H 4BA2I 2FMRA 1HNZH 2UXBH 4AIMA 2CTJA 3KDKA 1VIGA 3V69A 1IBLH 2UUCH 4JV5H 4DUZH 4NXNH 1HR0H 1I6UA 2JE6I 4X65H 4KHPH 1J4WA 2F4VH 1ZZJA 2JEBI 2OPVA 3OTOH 4DV4H 1IBKH 5IWAH 4JVYA 2UXDH 2LF0A 2Z0SA 1N32H 1DTJA 1ZZIA 2FPHX 1SEIA 2CTKA 1K1GA 1S03G 3L7ZC 2PQUA 4PDBA 1X4NA 4JI3H 4OO1G 4DV7H 4DV3H 2M6QA 2JVZA 4AQYH 3FAUA 5BR8H 4LF4H 3T1YH 1X0AA 4LF5H 4IFDG 1Z2IA 1PQXA 5JEAG 4X62H 5LMUH 1VIHA 3U1KA 2E5LH 4DR4H 4H8AA 1MSZA 1TUAA 4DV0H 3J80W 1I94H 4DR5H 2AXYA 4DUYH 2CTEA 2ZQEA 2X06A 2LRRA 3EZJA 4B3MH 3J7AK 1FJGH 4OD6A 3T1HH 1S20A 1ODHA 1AN7A 4E9JA 3SB1A 2JA9A 4JVHA 4X66H 3GKUA 4GKKH 1XNQH 1X4MA 4FJSA 1N34H 4JI7H 2JEAI 2Y3MA 3KDGA 4JI5H 4YY3H 4B8TA 2O4CA 2BA0A 4JI6H 4NBQA 4LIJA 5FLXW 2D9IA 1WHRA 4LF6H 1HNXH 4GKJH 3NCVA 2YQRA 3J81W 1XRHA
chains in the Genus database with same CATH topology
3VKEA 4WANA 2CTEA 1VIGA 2OPUA 1WVNA 3V69A 4BA1I 2JE6I 1ZZKA 1J4WA 2PY9A 2BL5A 2JEBI 2OPVA 1ZZJA 2QNDA 4JVYA 2NN6G 4AM3A 2CTMA 2Z0SA 1DTJA 2P2RA 2JA9A 4QMFB 1ZZIA 2ANRA 4JVHA 1EC6A 1KHMA 5K36G 2CTKA 4AIMA 1K1GA 1X4MA 3AEVB 3L7ZC 2PQUA 1X4NA 1J5KA 2JEAI 4OO1G 2HH2A 2MJHA 1WE8A 2JZXA 4WALA 2CTFA 2HH3A 2JVZA 4B8TA 2BA0A 2ANNA 4IFDG 4NBQA 5JEAG 4LIJA 2YQRA 1VIHA 2E3UA 3U1KA 1ZTGA 2DGRA 4BA2I 2FMRA 1TUAA 5C0XG 1DT4A 2CPQA 2CTJA 2CTLA 2AXYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VKE A;  4WAN A;  2CTE A;  1VIG A;  2OPU A;  1WVN A;  3V69 A;  4BA1 I;  2JE6 I;  1ZZK A;  1J4W A;  2PY9 A;  2BL5 A;  2JEB I;  2OPV A;  1ZZJ A;  2QND A;  4JVY A;  2NN6 G;  4AM3 A;  2CTM A;  2Z0S A;  1DTJ A;  2P2R A;  2JA9 A;  4QMF B;  1ZZI A;  2ANR A;  4JVH A;  1EC6 A;  1KHM A;  5K36 G;  2CTK A;  4AIM A;  1K1G A;  1X4M A;  3AEV B;  3L7Z C;  2PQU A;  1X4N A;  1J5K A;  2JEA I;  4OO1 G;  2HH2 A;  2MJH A;  1WE8 A;  2JZX A;  4WAL A;  2CTF A;  2HH3 A;  2JVZ A;  4B8T A;  2BA0 A;  2ANN A;  4IFD G;  4NBQ A;  5JEA G;  4LIJ A;  2YQR A;  1VIH A;  2E3U A;  3U1K A;  1ZTG A;  2DGR A;  4BA2 I;  2FMR A;  1TUA A;  5C0X G;  1DT4 A;  2CPQ A;  2CTJ A;  2CTL A;  2AXY A; 
#chains in the Genus database with same CATH topology
 1HNW H;  4B8C D;  4BA1 I;  3OET A;  2UU9 H;  4B3S H;  4LFA H;  1X9Z A;  1N33 H;  2PY9 A;  2PT7 G;  4YHH H;  4AM3 A;  2CTM A;  2P2R A;  4JI4 H;  2ANR A;  2G8Y A;  1V8C A;  4JI2 H;  4DR2 H;  1EC6 A;  2UXC H;  1KHM A;  4FJU A;  2VQF H;  5K36 G;  4NXM H;  3AEV B;  4X64 H;  4JI1 H;  4LF8 H;  4DR6 H;  1N36 H;  1WE8 A;  2K1H A;  2M8W A;  4JI8 H;  4LF9 H;  3GR5 A;  5LMN H;  1F0X A;  1XNR H;  2FFM A;  4DR1 H;  1XMO H;  2DGR A;  2LTL A;  4DV2 H;  5C0X G;  3UOE A;  1FKA H;  1DT4 A;  4LF7 H;  2CPQ A;  2UUB H;  4G08 A;  2CTL A;  3VKE A;  4WAN A;  1IBM H;  2OPU A;  4NZT M;  1WVN A;  4JI0 H;  4B3R H;  1V9N A;  1WTJ A;  1NXU A;  1ZZK A;  2UUA H;  4K0K H;  4LFB H;  2BL5 A;  2QND A;  2VKC A;  4NZR M;  4LFC H;  2NN6 G;  1XMQ H;  4OCH A;  3RF2 A;  5DT9 A;  4QMF B;  4EC5 A;  4DR7 H;  2CWF A;  1UG8 A;  3GAB A;  4DV5 H;  1J5K A;  2CWH A;  3I0P A;  1J5E H;  2HH2 A;  5A2Q W;  4JYA H;  2MJH A;  2A1S A;  2JZX A;  2CTF A;  2HH3 A;  3QD7 X;  4WAL A;  4DV1 H;  4DR3 H;  2HHH H;  2ZM6 H;  2ANN A;  5LL6 b;  4DV6 H;  2CPM A;  5IT9 W;  3JAM W;  1VBI A;  2E3U A;  2LTM A;  2VQE H;  1ZTG A;  3OSS D;  4B3T H;  4OX9 H;  4BA2 I;  2FMR A;  1HNZ H;  2UXB H;  4AIM A;  2CTJ A;  3KDK A;  1VIG A;  3V69 A;  1IBL H;  2UUC H;  4JV5 H;  4DUZ H;  4NXN H;  1HR0 H;  1I6U A;  2JE6 I;  4X65 H;  4KHP H;  1J4W A;  2F4V H;  1ZZJ A;  2JEB I;  2OPV A;  3OTO H;  4DV4 H;  1IBK H;  5IWA H;  4JVY A;  2UXD H;  2LF0 A;  2Z0S A;  1N32 H;  1DTJ A;  1ZZI A;  2FPH X;  1SEI A;  2CTK A;  1K1G A;  1S03 G;  3L7Z C;  2PQU A;  4PDB A;  1X4N A;  4JI3 H;  4OO1 G;  4DV7 H;  4DV3 H;  2M6Q A;  2JVZ A;  4AQY H;  3FAU A;  5BR8 H;  4LF4 H;  3T1Y H;  1X0A A;  4LF5 H;  4IFD G;  1Z2I A;  1PQX A;  5JEA G;  4X62 H;  5LMU H;  1VIH A;  3U1K A;  2E5L H;  4DR4 H;  4H8A A;  1MSZ A;  1TUA A;  4DV0 H;  3J80 W;  1I94 H;  4DR5 H;  2AXY A;  4DUY H;  2CTE A;  2ZQE A;  2X06 A;  2LRR A;  3EZJ A;  4B3M H;  3J7A K;  1FJG H;  4OD6 A;  3T1H H;  1S20 A;  1ODH A;  1AN7 A;  4E9J A;  3SB1 A;  2JA9 A;  4JVH A;  4X66 H;  3GKU A;  4GKK H;  1XNQ H;  1X4M A;  4FJS A;  1N34 H;  4JI7 H;  2JEA I;  2Y3M A;  3KDG A;  4JI5 H;  4YY3 H;  4B8T A;  2O4C A;  2BA0 A;  4JI6 H;  4NBQ A;  4LIJ A;  5FLX W;  2D9I A;  1WHR A;  4LF6 H;  1HNX H;  4GKJ H;  3NCV A;  2YQR A;  3J81 W;  1XRH A; 
#chains in the Genus database with same CATH homology
 3VKE A;  4WAN A;  2CTE A;  1VIG A;  2OPU A;  1WVN A;  3V69 A;  4BA1 I;  2JE6 I;  1ZZK A;  1J4W A;  2PY9 A;  2BL5 A;  2JEB I;  2OPV A;  1ZZJ A;  2QND A;  4JVY A;  2NN6 G;  4AM3 A;  2CTM A;  2Z0S A;  1DTJ A;  2P2R A;  2JA9 A;  4QMF B;  1ZZI A;  2ANR A;  4JVH A;  1EC6 A;  1KHM A;  5K36 G;  2CTK A;  4AIM A;  1K1G A;  1X4M A;  3AEV B;  3L7Z C;  2PQU A;  1X4N A;  1J5K A;  2JEA I;  4OO1 G;  2HH2 A;  2MJH A;  1WE8 A;  2JZX A;  4WAL A;  2CTF A;  2HH3 A;  2JVZ A;  4B8T A;  2BA0 A;  2ANN A;  4IFD G;  4NBQ A;  5JEA G;  4LIJ A;  2YQR A;  1VIH A;  2E3U A;  3U1K A;  1ZTG A;  2DGR A;  4BA2 I;  2FMR A;  1TUA A;  5C0X G;  1DT4 A;  2CPQ A;  2CTJ A;  2CTL A;  2AXY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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