2PQUA

Crystal structure of kh1 domain of human pcbp2 complexed to single-stranded 12-mer telomeric dna
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
72
structure length
72
Chain Sequence
KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna and dna binding protein/dna
molecule keywords 12-mer C-rich strand of human telomeric DNA
publication title X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2.
pubmed doi rcsb
source organism Homo sapiens
total genus 17
structure length 72
sequence length 72
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2pquA00
2BA0A 4LIJA 2JZXA 1ZZJA 3VKEA 2E3UA 1DTJA 2BL5A 1EC6A 2PY9A 2JVZA 4IFDG 4JVHA 2JEAI 4BA1I 2JA9A 2Z0SA 1J5KA 2YQRA 2PQUA 3AEVB 1KHMA 4NBQA 1VIHA 1ZZKA 3L7ZC 1K1GA 2CTMA 4AM3A 1DT4A 2HH2A 2OPUA 4WANA 1X4NA 5K36G 3V69A 2P2RA 2QNDA 4OO1G 2CTLA 1ZZIA 2NN6G 2CTKA 4AIMA 1TUAA 2OPVA 4QMFB 1J4WA 2CTEA 1ZTGA 4JVYA 2FMRA 1WVNA 3U1KA 5C0XG 1WE8A 1X4MA 2HH3A 1VIGA 2JEBI 2CTFA 2DGRA 2CTJA 2ANRA 2MJHA 2JE6I 4BA2I 2AXYA 2ANNA 4B8TA 5JEAG 2CPQA 4WALA
chains in the Genus database with same CATH superfamily
4LF5H 4NXNH 4DV6H 1PQXA 1XNQH 4B3RH 2BL5A 2PY9A 3OETA 4DV4H 4DV0H 4LF9H 4JVHA 2Z0SA 1ODHA 4LFCH 4JI4H 1XMOH 4NBQA 3L7ZC 4X65H 4DV5H 2CPMA 5LMUH 2M6QA 1XRHA 2OPUA 3I0PA 4OCHA 4B8CD 1X0AA 1X4NA 4EC5A 5LL6b 2UUCH 4OO1G 4AQYH 1ZZIA 1V9NA 4JV5H 1XNRH 4NZRM 1AN7A 2CTKA 2UU9H 2Y3MA 5IWAH 2OPVA 3OTOH 4JVYA 2FMRA 4DR4H 1WHRA 3NCVA 4GKKH 2CTFA 2LTMA 4B3SH 1X9ZA 3SB1A 4X66H 4WALA 2ZM6H 2D9IA 2JZXA 3J81W 3VKEA 2LRRA 4JI2H 1DTJA 3GABA 2VQEH 1EC6A 1N32H 4IFDG 3J80W 2YQRA 2PQUA 1SEIA 3AEVB 1KHMA 4E9JA 3RF2A 2CTMA 2O4CA 4LF6H 2CWFA 4NZTM 1DT4A 4JI6H 4JI3H 2QNDA 2FFMA 1XMQH 2F4VH 2UUAH 5FLXW 4QMFB 3J7AK 3U1KA 1X4MA 1HNWH 1S03G 1NXUA 3UOEA 2DGRA 2CTJA 1Z2IA 4DV2H 2ANRA 4OX9H 4LFBH 2AXYA 3KDKA 4DUZH 2BA0A 4FJSA 2FPHX 4DR5H 2E3UA 5BR8H 2UXBH 4DUYH 2JVZA 4DV7H 2K1HA 1V8CA 1HR0H 3GKUA 5A2QW 1J5KA 2JEAI 2ZQEA 1F0XA 4JI7H 4YHHH 3FAUA 1K1GA 4KHPH 4OD6A 3OSSD 1HNZH 4DR3H 4JI1H 4B3MH 2UXCH 1FKAH 4LF8H 1MSZA 2HH2A 5LMNH 4DR1H 4DR7H 5K36G 3V69A 4DR6H 1S20A 2NN6G 3T1YH 4G08A 4AIMA 1TUAA 2UUBH 1I6UA 4LFAH 2CTEA 2HHHH 1VBIA 4DV3H 1WVNA 1VIGA 4B3TH 4JI5H 2JEBI 3GR5A 2MJHA 2JE6I 4JI8H 4H8AA 4B8TA 4DR2H 4LF7H 4FJUA 2UXDH 4GKJH 1UG8A 3QD7X 4LIJA 1ZZJA 4JYAH 2LTLA 4YY3H 2VQFH 2E5LH 3T1HH 2X06A 2M8WA 2JA9A 4BA1I 3EZJA 3JAMW 1I94H 2LF0A 4LF4H 1N34H 1VIHA 1ZZKA 4X62H 1FJGH 4X64H 2A1SA 4DV1H 4AM3A 4PDBA 3KDGA 2PT7G 4WANA 1J5EH 2P2RA 4K0KH 4JI0H 1N33H 2CTLA 2G8YA 1IBLH 4NXMH 2CWHA 5DT9A 1HNXH 1J4WA 1ZTGA 1N36H 2VKCA 5C0XG 1WE8A 2HH3A 1IBMH 5IT9W 1IBKH 4BA2I 2ANNA 5JEAG 2CPQA 1WTJA
chains in the Genus database with same CATH topology
2BA0A 4LIJA 2JZXA 1ZZJA 3VKEA 2E3UA 1DTJA 2BL5A 1EC6A 2PY9A 2JVZA 4IFDG 4JVHA 2JEAI 4BA1I 2JA9A 2Z0SA 1J5KA 2YQRA 2PQUA 3AEVB 1KHMA 4NBQA 1VIHA 1ZZKA 3L7ZC 1K1GA 2CTMA 4AM3A 1DT4A 2HH2A 2OPUA 4WANA 1X4NA 5K36G 3V69A 2P2RA 2QNDA 4OO1G 2CTLA 1ZZIA 2NN6G 2CTKA 4AIMA 1TUAA 2OPVA 4QMFB 1J4WA 2CTEA 1ZTGA 4JVYA 2FMRA 1WVNA 3U1KA 5C0XG 1WE8A 1X4MA 2HH3A 1VIGA 2JEBI 2CTFA 2DGRA 2CTJA 2ANRA 2MJHA 2JE6I 4BA2I 2AXYA 2ANNA 4B8TA 5JEAG 2CPQA 4WALA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BA0 A;  4LIJ A;  2JZX A;  1ZZJ A;  3VKE A;  2E3U A;  1DTJ A;  2BL5 A;  1EC6 A;  2PY9 A;  2JVZ A;  4IFD G;  4JVH A;  2JEA I;  4BA1 I;  2JA9 A;  2Z0S A;  1J5K A;  2YQR A;  2PQU A;  3AEV B;  1KHM A;  4NBQ A;  1VIH A;  1ZZK A;  3L7Z C;  1K1G A;  2CTM A;  4AM3 A;  1DT4 A;  2HH2 A;  2OPU A;  4WAN A;  1X4N A;  5K36 G;  3V69 A;  2P2R A;  2QND A;  4OO1 G;  2CTL A;  1ZZI A;  2NN6 G;  2CTK A;  4AIM A;  1TUA A;  2OPV A;  4QMF B;  1J4W A;  2CTE A;  1ZTG A;  4JVY A;  2FMR A;  1WVN A;  3U1K A;  5C0X G;  1WE8 A;  1X4M A;  2HH3 A;  1VIG A;  2JEB I;  2CTF A;  2DGR A;  2CTJ A;  2ANR A;  2MJH A;  2JE6 I;  4BA2 I;  2AXY A;  2ANN A;  4B8T A;  5JEA G;  2CPQ A;  4WAL A; 
#chains in the Genus database with same CATH topology
 4LF5 H;  4NXN H;  4DV6 H;  1PQX A;  1XNQ H;  4B3R H;  2BL5 A;  2PY9 A;  3OET A;  4DV4 H;  4DV0 H;  4LF9 H;  4JVH A;  2Z0S A;  1ODH A;  4LFC H;  4JI4 H;  1XMO H;  4NBQ A;  3L7Z C;  4X65 H;  4DV5 H;  2CPM A;  5LMU H;  2M6Q A;  1XRH A;  2OPU A;  3I0P A;  4OCH A;  4B8C D;  1X0A A;  1X4N A;  4EC5 A;  5LL6 b;  2UUC H;  4OO1 G;  4AQY H;  1ZZI A;  1V9N A;  4JV5 H;  1XNR H;  4NZR M;  1AN7 A;  2CTK A;  2UU9 H;  2Y3M A;  5IWA H;  2OPV A;  3OTO H;  4JVY A;  2FMR A;  4DR4 H;  1WHR A;  3NCV A;  4GKK H;  2CTF A;  2LTM A;  4B3S H;  1X9Z A;  3SB1 A;  4X66 H;  4WAL A;  2ZM6 H;  2D9I A;  2JZX A;  3J81 W;  3VKE A;  2LRR A;  4JI2 H;  1DTJ A;  3GAB A;  2VQE H;  1EC6 A;  1N32 H;  4IFD G;  3J80 W;  2YQR A;  2PQU A;  1SEI A;  3AEV B;  1KHM A;  4E9J A;  3RF2 A;  2CTM A;  2O4C A;  4LF6 H;  2CWF A;  4NZT M;  1DT4 A;  4JI6 H;  4JI3 H;  2QND A;  2FFM A;  1XMQ H;  2F4V H;  2UUA H;  5FLX W;  4QMF B;  3J7A K;  3U1K A;  1X4M A;  1HNW H;  1S03 G;  1NXU A;  3UOE A;  2DGR A;  2CTJ A;  1Z2I A;  4DV2 H;  2ANR A;  4OX9 H;  4LFB H;  2AXY A;  3KDK A;  4DUZ H;  2BA0 A;  4FJS A;  2FPH X;  4DR5 H;  2E3U A;  5BR8 H;  2UXB H;  4DUY H;  2JVZ A;  4DV7 H;  2K1H A;  1V8C A;  1HR0 H;  3GKU A;  5A2Q W;  1J5K A;  2JEA I;  2ZQE A;  1F0X A;  4JI7 H;  4YHH H;  3FAU A;  1K1G A;  4KHP H;  4OD6 A;  3OSS D;  1HNZ H;  4DR3 H;  4JI1 H;  4B3M H;  2UXC H;  1FKA H;  4LF8 H;  1MSZ A;  2HH2 A;  5LMN H;  4DR1 H;  4DR7 H;  5K36 G;  3V69 A;  4DR6 H;  1S20 A;  2NN6 G;  3T1Y H;  4G08 A;  4AIM A;  1TUA A;  2UUB H;  1I6U A;  4LFA H;  2CTE A;  2HHH H;  1VBI A;  4DV3 H;  1WVN A;  1VIG A;  4B3T H;  4JI5 H;  2JEB I;  3GR5 A;  2MJH A;  2JE6 I;  4JI8 H;  4H8A A;  4B8T A;  4DR2 H;  4LF7 H;  4FJU A;  2UXD H;  4GKJ H;  1UG8 A;  3QD7 X;  4LIJ A;  1ZZJ A;  4JYA H;  2LTL A;  4YY3 H;  2VQF H;  2E5L H;  3T1H H;  2X06 A;  2M8W A;  2JA9 A;  4BA1 I;  3EZJ A;  3JAM W;  1I94 H;  2LF0 A;  4LF4 H;  1N34 H;  1VIH A;  1ZZK A;  4X62 H;  1FJG H;  4X64 H;  2A1S A;  4DV1 H;  4AM3 A;  4PDB A;  3KDG A;  2PT7 G;  4WAN A;  1J5E H;  2P2R A;  4K0K H;  4JI0 H;  1N33 H;  2CTL A;  2G8Y A;  1IBL H;  4NXM H;  2CWH A;  5DT9 A;  1HNX H;  1J4W A;  1ZTG A;  1N36 H;  2VKC A;  5C0X G;  1WE8 A;  2HH3 A;  1IBM H;  5IT9 W;  1IBK H;  4BA2 I;  2ANN A;  5JEA G;  2CPQ A;  1WTJ A; 
#chains in the Genus database with same CATH homology
 2BA0 A;  4LIJ A;  2JZX A;  1ZZJ A;  3VKE A;  2E3U A;  1DTJ A;  2BL5 A;  1EC6 A;  2PY9 A;  2JVZ A;  4IFD G;  4JVH A;  2JEA I;  4BA1 I;  2JA9 A;  2Z0S A;  1J5K A;  2YQR A;  2PQU A;  3AEV B;  1KHM A;  4NBQ A;  1VIH A;  1ZZK A;  3L7Z C;  1K1G A;  2CTM A;  4AM3 A;  1DT4 A;  2HH2 A;  2OPU A;  4WAN A;  1X4N A;  5K36 G;  3V69 A;  2P2R A;  2QND A;  4OO1 G;  2CTL A;  1ZZI A;  2NN6 G;  2CTK A;  4AIM A;  1TUA A;  2OPV A;  4QMF B;  1J4W A;  2CTE A;  1ZTG A;  4JVY A;  2FMR A;  1WVN A;  3U1K A;  5C0X G;  1WE8 A;  1X4M A;  2HH3 A;  1VIG A;  2JEB I;  2CTF A;  2DGR A;  2CTJ A;  2ANR A;  2MJH A;  2JE6 I;  4BA2 I;  2AXY A;  2ANN A;  4B8T A;  5JEA G;  2CPQ A;  4WAL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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