3OSSD

The crystal structure of enterotoxigenic escherichia coli gspc-gspd complex from the type ii secretion system
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
175
structure length
157
Chain Sequence
ATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMYIDTNNDGYIEGDELVLKVVKSAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional studies on the interaction of GspC and GspD in the type II secretion system.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein transport
molecule keywords TYPE 2 SECRETION SYSTEM, GSPC
total genus 45
structure length 157
sequence length 175
ec nomenclature
pdb deposition date 2010-09-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 3ossD00
4G08A 3OSSD 4EC5A 3EZJA 2Y3MA 3GR5A 4E9JA
chains in the Genus database with same CATH superfamily
2P2RA 1PQXA 4OX9H 4LIJA 4LFCH 2CPMA 4DUZH 1S03G 4IFDG 4WANA 2LF0A 2QNDA 4X66H 4WALA 1K1GA 2OPUA 2M6QA 5IWAH 1X4MA 2CTFA 4X62H 4LF4H 4LF6H 2FFMA 3GR5A 3OETA 3QD7X 2VQEH 4DV2H 4DR5H 2PY9A 1AN7A 1ODHA 1WHRA 4YY3H 2CPQA 2CWFA 4EC5A 4X65H 1ZTGA 2HHHH 1V8CA 4LFBH 1UG8A 1WVNA 2NN6G 1HR0H 1I94H 2LTLA 5LMNH 4DV3H 4LF5H 1X0AA 2PQUA 4JI5H 1X9ZA 4NXNH 2X06A 3KDKA 4B8TA 4KHPH 1X4NA 4DR6H 1IBLH 4JI3H 4B3TH 2LRRA 4DV5H 2E3UA 3GABA 4NXMH 4DR7H 1N33H 4FJUA 5LMUH 2HH2A 4X64H 4B3SH 2M8WA 3FAUA 4AM3A 2CTLA 4JI0H 4DV1H 2CTMA 4JVYA 4DUYH 1N34H 4OCHA 2CTEA 1VIHA 2K1HA 5BR8H 2HH3A 4BA2I 2UXCH 4DR2H 2PT7G 2UUCH 1J5KA 2UUBH 3U1KA 3UOEA 2JEBI 3KDGA 4DV7H 4OO1G 4JI8H 4DR1H 1ZZIA 5K36G 5JEAG 1XMQH 4LF7H 3AEVB 1WTJA 3J80W 4DV6H 3T1YH 2ZM6H 1KHMA 4JV5H 1SEIA 3GKUA 4NBQA 2ANRA 1XNRH 1J4WA 2CTKA 3RF2A 2VQFH 4G08A 2BA0A 4AQYH 2JEAI 3OSSD 4JYAH 2JZXA 2VKCA 4AIMA 1MSZA 3VKEA 2FPHX 4B3MH 3OTOH 5A2QW 1N32H 4JVHA 2A1SA 4B3RH 2Y3MA 4LFAH 2JE6I 3NCVA 4GKKH 1DTJA 1F0XA 3V69A 4B8CD 3T1HH 1J5EH 2E5LH 4JI7H 3JAMW 1XNQH 2ANNA 5C0XG 4DR3H 4FJSA 4DR4H 4JI4H 4NZTM 3J81W 1WE8A 4DV4H 1VBIA 2O4CA 1FJGH 2F4VH 1EC6A 2CTJA 2UXDH 4PDBA 1ZZKA 4OD6A 1FKAH 2G8YA 2FMRA 4DV0H 2MJHA 2UXBH 1TUAA 2OPVA 2YQRA 1Z2IA 2BL5A 3I0PA 1HNWH 1HNXH 2UUAH 4JI1H 2D9IA 1IBMH 1IBKH 1ZZJA 4BA1I 1N36H 4LF9H 3SB1A 5IT9W 1XRHA 5LL6b 4JI6H 2ZQEA 2Z0SA 4QMFB 3L7ZC 3EZJA 4GKJH 5DT9A 2AXYA 1XMOH 4JI2H 1VIGA 1V9NA 1NXUA 1HNZH 4K0KH 4YHHH 4NZRM 1DT4A 2UU9H 4LF8H 2JA9A 4H8AA 1S20A 1I6UA 2LTMA 2JVZA 5FLXW 3J7AK 4E9JA 2DGRA 2CWHA
chains in the Genus database with same CATH topology
4OX9H 4LFCH 4DUZH 1S03G 2LF0A 4X66H 5IWAH 4LF4H 4X62H 4LF6H 4DV2H 3GR5A 3OETA 3QD7X 2VQEH 4DR5H 1AN7A 1ODHA 4YY3H 4EC5A 4X65H 2HHHH 4LFBH 1HR0H 1I94H 5LMNH 4DV3H 4LF5H 4JI5H 1X9ZA 4NXNH 3KDKA 4KHPH 4DR6H 1IBLH 4JI3H 4B3TH 4DV5H 3GABA 4NXMH 4DR7H 1N33H 5LMUH 4B3SH 4X64H 3FAUA 4JI0H 4DV1H 4DUYH 1N34H 4OCHA 5BR8H 2UXCH 4DR2H 2PT7G 2UUCH 2UUBH 3KDGA 4DV7H 4JI8H 4DR1H 1XMQH 4LF7H 4DV6H 3J80W 3T1YH 2ZM6H 4JV5H 1SEIA 1XNRH 3RF2A 2VQFH 4G08A 4AQYH 3OSSD 4JYAH 2VKCA 2FPHX 4B3MH 3OTOH 5A2QW 1N32H 4B3RH 2Y3MA 4LFAH 3NCVA 4GKKH 4JI7H 1F0XA 1J5EH 4B8CD 3T1HH 2E5LH 1XNQH 3JAMW 4DR3H 4DR4H 4JI4H 4NZTM 3J81W 4DV4H 1FJGH 2O4CA 2F4VH 2UXDH 4PDBA 4OD6A 1FKAH 4DV0H 2UXBH 1HNWH 1HNXH 2UUAH 4JI1H 2D9IA 1IBMH 1IBKH 1N36H 4LF9H 3SB1A 5IT9W 5LL6b 4JI6H 2ZQEA 3EZJA 4GKJH 5DT9A 1XMOH 4JI2H 1HNZH 4K0KH 4YHHH 4NZRM 2UU9H 4LF8H 1I6UA 5FLXW 3J7AK 4E9JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G08 A;  3OSS D;  4EC5 A;  3EZJ A;  2Y3M A;  3GR5 A;  4E9J A; 
#chains in the Genus database with same CATH topology
 2P2R A;  1PQX A;  4OX9 H;  4LIJ A;  4LFC H;  2CPM A;  4DUZ H;  1S03 G;  4IFD G;  4WAN A;  2LF0 A;  2QND A;  4X66 H;  4WAL A;  1K1G A;  2OPU A;  2M6Q A;  5IWA H;  1X4M A;  2CTF A;  4X62 H;  4LF4 H;  4LF6 H;  2FFM A;  3GR5 A;  3OET A;  3QD7 X;  2VQE H;  4DV2 H;  4DR5 H;  2PY9 A;  1AN7 A;  1ODH A;  1WHR A;  4YY3 H;  2CPQ A;  2CWF A;  4EC5 A;  4X65 H;  1ZTG A;  2HHH H;  1V8C A;  4LFB H;  1UG8 A;  1WVN A;  2NN6 G;  1HR0 H;  1I94 H;  2LTL A;  5LMN H;  4DV3 H;  4LF5 H;  1X0A A;  2PQU A;  4JI5 H;  1X9Z A;  4NXN H;  2X06 A;  3KDK A;  4B8T A;  4KHP H;  1X4N A;  4DR6 H;  1IBL H;  4JI3 H;  4B3T H;  2LRR A;  4DV5 H;  2E3U A;  3GAB A;  4NXM H;  4DR7 H;  1N33 H;  4FJU A;  5LMU H;  2HH2 A;  4X64 H;  4B3S H;  2M8W A;  3FAU A;  4AM3 A;  2CTL A;  4JI0 H;  4DV1 H;  2CTM A;  4JVY A;  4DUY H;  1N34 H;  4OCH A;  2CTE A;  1VIH A;  2K1H A;  5BR8 H;  2HH3 A;  4BA2 I;  2UXC H;  4DR2 H;  2PT7 G;  2UUC H;  1J5K A;  2UUB H;  3U1K A;  3UOE A;  2JEB I;  3KDG A;  4DV7 H;  4OO1 G;  4JI8 H;  4DR1 H;  1ZZI A;  5K36 G;  5JEA G;  1XMQ H;  4LF7 H;  3AEV B;  1WTJ A;  3J80 W;  4DV6 H;  3T1Y H;  2ZM6 H;  1KHM A;  4JV5 H;  1SEI A;  3GKU A;  4NBQ A;  2ANR A;  1XNR H;  1J4W A;  2CTK A;  3RF2 A;  2VQF H;  4G08 A;  2BA0 A;  4AQY H;  2JEA I;  3OSS D;  4JYA H;  2JZX A;  2VKC A;  4AIM A;  1MSZ A;  3VKE A;  2FPH X;  4B3M H;  3OTO H;  5A2Q W;  1N32 H;  4JVH A;  2A1S A;  4B3R H;  2Y3M A;  4LFA H;  2JE6 I;  3NCV A;  4GKK H;  1DTJ A;  1F0X A;  3V69 A;  4B8C D;  3T1H H;  1J5E H;  2E5L H;  4JI7 H;  3JAM W;  1XNQ H;  2ANN A;  5C0X G;  4DR3 H;  4FJS A;  4DR4 H;  4JI4 H;  4NZT M;  3J81 W;  1WE8 A;  4DV4 H;  1VBI A;  2O4C A;  1FJG H;  2F4V H;  1EC6 A;  2CTJ A;  2UXD H;  4PDB A;  1ZZK A;  4OD6 A;  1FKA H;  2G8Y A;  2FMR A;  4DV0 H;  2MJH A;  2UXB H;  1TUA A;  2OPV A;  2YQR A;  1Z2I A;  2BL5 A;  3I0P A;  1HNW H;  1HNX H;  2UUA H;  4JI1 H;  2D9I A;  1IBM H;  1IBK H;  1ZZJ A;  4BA1 I;  1N36 H;  4LF9 H;  3SB1 A;  5IT9 W;  1XRH A;  5LL6 b;  4JI6 H;  2ZQE A;  2Z0S A;  4QMF B;  3L7Z C;  3EZJ A;  4GKJ H;  5DT9 A;  2AXY A;  1XMO H;  4JI2 H;  1VIG A;  1V9N A;  1NXU A;  1HNZ H;  4K0K H;  4YHH H;  4NZR M;  1DT4 A;  2UU9 H;  4LF8 H;  2JA9 A;  4H8A A;  1S20 A;  1I6U A;  2LTM A;  2JVZ A;  5FLX W;  3J7A K;  4E9J A;  2DGR A;  2CWH A; 
#chains in the Genus database with same CATH homology
 4OX9 H;  4LFC H;  4DUZ H;  1S03 G;  2LF0 A;  4X66 H;  5IWA H;  4LF4 H;  4X62 H;  4LF6 H;  4DV2 H;  3GR5 A;  3OET A;  3QD7 X;  2VQE H;  4DR5 H;  1AN7 A;  1ODH A;  4YY3 H;  4EC5 A;  4X65 H;  2HHH H;  4LFB H;  1HR0 H;  1I94 H;  5LMN H;  4DV3 H;  4LF5 H;  4JI5 H;  1X9Z A;  4NXN H;  3KDK A;  4KHP H;  4DR6 H;  1IBL H;  4JI3 H;  4B3T H;  4DV5 H;  3GAB A;  4NXM H;  4DR7 H;  1N33 H;  5LMU H;  4B3S H;  4X64 H;  3FAU A;  4JI0 H;  4DV1 H;  4DUY H;  1N34 H;  4OCH A;  5BR8 H;  2UXC H;  4DR2 H;  2PT7 G;  2UUC H;  2UUB H;  3KDG A;  4DV7 H;  4JI8 H;  4DR1 H;  1XMQ H;  4LF7 H;  4DV6 H;  3J80 W;  3T1Y H;  2ZM6 H;  4JV5 H;  1SEI A;  1XNR H;  3RF2 A;  2VQF H;  4G08 A;  4AQY H;  3OSS D;  4JYA H;  2VKC A;  2FPH X;  4B3M H;  3OTO H;  5A2Q W;  1N32 H;  4B3R H;  2Y3M A;  4LFA H;  3NCV A;  4GKK H;  4JI7 H;  1F0X A;  1J5E H;  4B8C D;  3T1H H;  2E5L H;  1XNQ H;  3JAM W;  4DR3 H;  4DR4 H;  4JI4 H;  4NZT M;  3J81 W;  4DV4 H;  1FJG H;  2O4C A;  2F4V H;  2UXD H;  4PDB A;  4OD6 A;  1FKA H;  4DV0 H;  2UXB H;  1HNW H;  1HNX H;  2UUA H;  4JI1 H;  2D9I A;  1IBM H;  1IBK H;  1N36 H;  4LF9 H;  3SB1 A;  5IT9 W;  5LL6 b;  4JI6 H;  2ZQE A;  3EZJ A;  4GKJ H;  5DT9 A;  1XMO H;  4JI2 H;  1HNZ H;  4K0K H;  4YHH H;  4NZR M;  2UU9 H;  4LF8 H;  1I6U A;  5FLX W;  3J7A K;  4E9J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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