1Z2IA

Crystal structure of agrobacterium tumefaciens malate dehydrogenase, new york structural genomics consortium
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
350
structure length
350
Chain Sequence
b'TVLARLDELERFCRAVFLAVGTDEETADAATRAMMHGTRLGVDSHGVRLLAHYVTALEGGRLNRRPQISRVSGFGAVETIDADHAHGARATYAAMENAMALAEKFGIGAVAIRNSSHFGPAGAYALEAARQGYIGLAFCNSDSFVRLHDGAMRFHGTNPIAVGVPAADDMPWLLDMATSAVPYNRVLLYRSLGQQLPQGVASDGDGVDTRDPNAVEMLAPVGGEFGFKGAALAGVVEIFSAVLTGMRLSFDLAPMGGPDFSTPRGLGAFVLALKPEAFLERDVFDESMKRYLEVLRGSPAREDCKVMAPGDREWAVAAKREREGAPVDPVTRAAFSELAEKFSVSPPTYH'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords malate dehydrogenase
molecule tags Oxidoreductase
source organism Agrobacterium tumefaciens
publication title Crystal Structure of Agrobacterium Tumefaciens Malate Dehydrogenase
rcsb
total genus 103
structure length 350
sequence length 350
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2005-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02615 Ldh_2 Malate/L-lactate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1530.10 Mainly Alpha Orthogonal Bundle Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 1z2iA01
3.30.60.50 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Hypothetical oxidoreductase yiak; domain 3 1z2iA03
3.30.1370.60 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Hypothetical oxidoreductase yiak; domain 2 1z2iA02
1V9NA 4FJUA 2CWHA 3UOEA 1XRHA 1WTJA 2G8YA 1Z2IA 2X06A 1X0AA 3I0PA 4H8AA 2CWFA 4FJSA 1S20A 1VBIA 1NXUA
chains in the Genus database with same CATH superfamily
2A1SA 2ANNA 2WGCA 1XA6A 3VE5A 4DR7H 2YQPA 2F3CI 2DB6A 5DAEA 1K1GA 2FMRA 1K7TA 1ULNA 3AEVB 4HGUA 1WGTA 4MPIA 1CHOI 1FARA 1PPFI 2UXBH 1HNZH 5HI7A 2GVIA 1M8CA 3BJIA 5CCMA 1OMUA 5FUVA 4DR6H 3TO9A 2HHHH 4DV6H 1IY5A 1FY7A 3TOBA 2E73A 3T1YH 1XNRH 2JVZA 1FYBA 2JA9A 1OVOA 2F4VH 1DTJA 2GKTI 2ORWA 3HH2C 1OYVI 5FUYA 5E3PA 2V1CA 4OO1G 2Y0MA 1I6UA 4GKJH 1MJBA 4OD6A 2P6AC 2BA0A 4DR2H 1TURA 2MJHA 4GI3C 3QD7X 1BMOA 1IBMH 3TO7A 4UXJA 2SGQI 1AN7A 1ZTGA 1S20A 3J7AK 5E3RA 1CE3A 3UOEA 5LMNH 2M8WA 3R5AA 2N17A 3EZJA 2RC4A 2QPOA 4LFCH 4BA1I 2NU1I 4DV5H 2CPQA 2Y3MA 2OZUA 2W0TA 5IWAH 4DV7H 1FKAH 1UVFA 2ORVA 4B6DA 2V1CC 1R0RI 2WCYA 2ANRA 3GKUA 4DV2H 4DUYH 2E3UA 5K36G 1K7UA 1KBEA 3GABA 1XRHA 3FC3A 2E5RA 1HR0H 2L8EA 2CTFA 1TBOA 4OVOA 4NZRM 4KHPH 5JHWC 4FJUA 5DT9A 1TUAA 1XMOH 2SGDI 2CTMA 2JZXA 2E5LH 3R5DA 1IW4A 2BUSA 1W3SA 4H8AA 2VRWB 2OPUA 5FUXA 1WGCA 4JCVE 2SGPI 2ERWA 3OXLA 4DV4H 4AM3A 3KY9A 1SGNI 5LL6b 2NU2I 2KMOA 4E1RA 5FUWA 1FAQA 4IFDG 2FNFX 1SGPI 4DR5H 3OETA 2LEOA 1YU6C 4L9MA 1HNXH 1TOTA 1X0AA 2V53A 1HEVA 2ARPF 3B4VC 1PJUA 1U5KA 1MJ9A 2QNDA 2RIJA 3VDPA 2NN6G 1HNWH 4JI7H 1CT4I 1R79A 2LTMA 1RFHA 2OPVA 1SGRI 1TBQR 2DGRA 2N71A 3JAMW 1CGJI 4B3RH 2K1HA 1SGQI 4JI8H 2ODDA 1J5KA 1TUSA 1KBFA 2UUCH 2DIPA 1N32H 4JI0H 2PT7G 3OTOH 2VQFH 4JI3H 1ULMA 2HH3A 3OSSD 4JI1H 3SEKC 2VQEH 2LTLA 4LIJA 3E2IA 2FPHX 3UGLA 2CTKA 3TOAA 1I94H 3UFFA 1MJAA 2B8TA 2PQUA 1N34H 4B8CD 4LF4H 4E1PA 5J8CA 2AXYA 1H0ZA 3UGIA 4LF6H 2JE6I 5JEAG 1W4RA 4JI4H 2M6QA 4X65H 4LF5H 3RF2A 4UXIA 2X3TA 1MSZA 1F0XA 1VIHA 3SGBI 3J80W 3MEKA 2CWHA 1WTJA 1AN1I 1J4WA 1ZZKA 2JEAI 1TIHA 3OL0A 4SGBI 1IBKH 1KMAA 1X74A 3T1HH 2ZQEA 3U1KA 3V69A 3KDGA 4JV5H 4DUZH 2OVOA 2JYYA 3QWPA 4G08A 2YQRA 4WALA 2JZMA 3SGQI 2ENNA 2A20A 2YUUA 1CT2I 2LRRA 2Z0SA 4AIMA 3TJQA 2UVOA 3QTLD 1X4MA 4YY3H 4JYAH 1WVNA 2CTLA 3NCVA 4B3TH 4JI6H 9WGAA 2B0UC 3CXLA 1P9ZA 2UZ3A 3OVOA 2ROWA 2G8YA 1TGSI 1DS2I 4JI5H 3PDNA 1CSOI 3TO6A 5EX3A 1YTPA 2QQCA 2CPMA 4UXHA 2VKCA 4E9JA 2KMQA 2CTEA 1IY6A 1Y8FA 4X62H 2CJSC 2QQDA 4DV1H 3RU0A 3KDKA 3VKEA 1ZZIA 1WKXA 1P9GA 4FKDA 2D9IA 2N1AB 4BA2I 2KCXA 1DS3I 3UEYA 1V9NA 5J8FA 2SGFI 1X9ZA 4B8TA 1N13A 3OXGA 4DR4H 4LFBH 1MT1A 1V1IA 1PTRA 1SGDI 4B3SH 1WHRA 3D00A 2NU3I 2UUBH 2ENZA 5LMUH 2LB7A 1XMQH 2J9RA 2XRCA 1OMTA 2KMPA 2QQEA 1TBNA 4DNCA 1VIGA 1DT4A 1EC6A 4WP4A 1N33H 4OX9H 1LR8A 2N52A 2UUAH 4YHHH 4A24A 2SGEI 5IT9W 3I0PA 5A2QW 4NXNH 4LFAH 2ZM6H 1VDDA 2UXDH 2LUYA 4OCHA 4K0KH 4PDBA 4NBQA 1J5EH 1UHAA 3FAUA 1ULKA 2X52A 5FLXW 2L7XA 5CCLA 4AQYH 1HDLA 1ODHA 2QQ0A 2CTJA 5EX0A 1PCEA 2GKVA 2P2RA 1CGII 2WVJA 1Y1CA 4GKKH 2GIVA 1X4SA 4JVHA 4B3MH 1N36H 2GKRI 1XNQH 2X06A 3R5BA 4LF9H 4WANA 2ELIA 4DV3H 1FJGH 1Q9BA 2KMRA 3FSXA 1BUSA 3OXFA 1XX6A 1CT0I 1HPTA 3SB1A 1PQXA 1SEIA 5BR8H 2JA1A 3L7ZC 2NU4I 1IBLH 4QMFB 1SGEI 3R5CA 1NUBA 2FFMA 2PY9A 1LR9A 4JVYA 5HQ8A 1HJAI 3GOXA 1X4NA 2DKVA 3E59A 1Z2IA 2UU9H 4NZTM 4LF8H 1WE8A 2HH2A 2LF0A 1UVGA 5C0XG 1UG8A 2O4CA 1Z7KB 2UXCH 2J87A 4EC5A 2OU2A 3QAHA 1Y1BA 1KHMA 1VBIA 1XBTA 2JW6A 2CWGA 2PQ8A 4DR3H 1PTQA 2JEBI 2CWFA 4FJSA 1LR7A 4DR1H 1S03G 3FSYA 1K7VA 2BL5A 2M5XA 3J81W 1UUCA 4NXMH 2NU0I 4X66H 1NXUA 3GR5A 5E3QA 4AMLA 1TBRR 4X64H 3VDUA 1ZZJA 2JXDA 2K9HA 3UEJA 4JI2H 4LF7H 2OD1A 3UGDA 1V8CA 1M8BA 7WGAA 1SGYI 1V1HA 4DV0H
chains in the Genus database with same CATH topology
1V9NA 4FJUA 2CWHA 3UOEA 1XRHA 1WTJA 2G8YA 1Z2IA 2X06A 1X0AA 3I0PA 4H8AA 2CWFA 4FJSA 1S20A 1VBIA 1NXUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V9N A;  4FJU A;  2CWH A;  3UOE A;  1XRH A;  1WTJ A;  2G8Y A;  1Z2I A;  2X06 A;  1X0A A;  3I0P A;  4H8A A;  2CWF A;  4FJS A;  1S20 A;  1VBI A;  1NXU A; 
#chains in the Genus database with same CATH topology
 2A1S A;  2ANN A;  2WGC A;  1XA6 A;  3VE5 A;  4DR7 H;  2YQP A;  2F3C I;  2DB6 A;  5DAE A;  1K1G A;  2FMR A;  1K7T A;  1ULN A;  3AEV B;  4HGU A;  1WGT A;  4MPI A;  1CHO I;  1FAR A;  1PPF I;  2UXB H;  1HNZ H;  5HI7 A;  2GVI A;  1M8C A;  3BJI A;  5CCM A;  1OMU A;  5FUV A;  4DR6 H;  3TO9 A;  2HHH H;  4DV6 H;  1IY5 A;  1FY7 A;  3TOB A;  2E73 A;  3T1Y H;  1XNR H;  2JVZ A;  1FYB A;  2JA9 A;  1OVO A;  2F4V H;  1DTJ A;  2GKT I;  2ORW A;  3HH2 C;  1OYV I;  5FUY A;  5E3P A;  2V1C A;  4OO1 G;  2Y0M A;  1I6U A;  4GKJ H;  1MJB A;  4OD6 A;  2P6A C;  2BA0 A;  4DR2 H;  1TUR A;  2MJH A;  4GI3 C;  3QD7 X;  1BMO A;  1IBM H;  3TO7 A;  4UXJ A;  2SGQ I;  1AN7 A;  1ZTG A;  1S20 A;  3J7A K;  5E3R A;  1CE3 A;  3UOE A;  5LMN H;  2M8W A;  3R5A A;  2N17 A;  3EZJ A;  2RC4 A;  2QPO A;  4LFC H;  4BA1 I;  2NU1 I;  4DV5 H;  2CPQ A;  2Y3M A;  2OZU A;  2W0T A;  5IWA H;  4DV7 H;  1FKA H;  1UVF A;  2ORV A;  4B6D A;  2V1C C;  1R0R I;  2WCY A;  2ANR A;  3GKU A;  4DV2 H;  4DUY H;  2E3U A;  5K36 G;  1K7U A;  1KBE A;  3GAB A;  1XRH A;  3FC3 A;  2E5R A;  1HR0 H;  2L8E A;  2CTF A;  1TBO A;  4OVO A;  4NZR M;  4KHP H;  5JHW C;  4FJU A;  5DT9 A;  1TUA A;  1XMO H;  2SGD I;  2CTM A;  2JZX A;  2E5L H;  3R5D A;  1IW4 A;  2BUS A;  1W3S A;  4H8A A;  2VRW B;  2OPU A;  5FUX A;  1WGC A;  4JCV E;  2SGP I;  2ERW A;  3OXL A;  4DV4 H;  4AM3 A;  3KY9 A;  1SGN I;  5LL6 b;  2NU2 I;  2KMO A;  4E1R A;  5FUW A;  1FAQ A;  4IFD G;  2FNF X;  1SGP I;  4DR5 H;  3OET A;  2LEO A;  1YU6 C;  4L9M A;  1HNX H;  1TOT A;  1X0A A;  2V53 A;  1HEV A;  2ARP F;  3B4V C;  1PJU A;  1U5K A;  1MJ9 A;  2QND A;  2RIJ A;  3VDP A;  2NN6 G;  1HNW H;  4JI7 H;  1CT4 I;  1R79 A;  2LTM A;  1RFH A;  2OPV A;  1SGR I;  1TBQ R;  2DGR A;  2N71 A;  3JAM W;  1CGJ I;  4B3R H;  2K1H A;  1SGQ I;  4JI8 H;  2ODD A;  1J5K A;  1TUS A;  1KBF A;  2UUC H;  2DIP A;  1N32 H;  4JI0 H;  2PT7 G;  3OTO H;  2VQF H;  4JI3 H;  1ULM A;  2HH3 A;  3OSS D;  4JI1 H;  3SEK C;  2VQE H;  2LTL A;  4LIJ A;  3E2I A;  2FPH X;  3UGL A;  2CTK A;  3TOA A;  1I94 H;  3UFF A;  1MJA A;  2B8T A;  2PQU A;  1N34 H;  4B8C D;  4LF4 H;  4E1P A;  5J8C A;  2AXY A;  1H0Z A;  3UGI A;  4LF6 H;  2JE6 I;  5JEA G;  1W4R A;  4JI4 H;  2M6Q A;  4X65 H;  4LF5 H;  3RF2 A;  4UXI A;  2X3T A;  1MSZ A;  1F0X A;  1VIH A;  3SGB I;  3J80 W;  3MEK A;  2CWH A;  1WTJ A;  1AN1 I;  1J4W A;  1ZZK A;  2JEA I;  1TIH A;  3OL0 A;  4SGB I;  1IBK H;  1KMA A;  1X74 A;  3T1H H;  2ZQE A;  3U1K A;  3V69 A;  3KDG A;  4JV5 H;  4DUZ H;  2OVO A;  2JYY A;  3QWP A;  4G08 A;  2YQR A;  4WAL A;  2JZM A;  3SGQ I;  2ENN A;  2A20 A;  2YUU A;  1CT2 I;  2LRR A;  2Z0S A;  4AIM A;  3TJQ A;  2UVO A;  3QTL D;  1X4M A;  4YY3 H;  4JYA H;  1WVN A;  2CTL A;  3NCV A;  4B3T H;  4JI6 H;  9WGA A;  2B0U C;  3CXL A;  1P9Z A;  2UZ3 A;  3OVO A;  2ROW A;  2G8Y A;  1TGS I;  1DS2 I;  4JI5 H;  3PDN A;  1CSO I;  3TO6 A;  5EX3 A;  1YTP A;  2QQC A;  2CPM A;  4UXH A;  2VKC A;  4E9J A;  2KMQ A;  2CTE A;  1IY6 A;  1Y8F A;  4X62 H;  2CJS C;  2QQD A;  4DV1 H;  3RU0 A;  3KDK A;  3VKE A;  1ZZI A;  1WKX A;  1P9G A;  4FKD A;  2D9I A;  2N1A B;  4BA2 I;  2KCX A;  1DS3 I;  3UEY A;  1V9N A;  5J8F A;  2SGF I;  1X9Z A;  4B8T A;  1N13 A;  3OXG A;  4DR4 H;  4LFB H;  1MT1 A;  1V1I A;  1PTR A;  1SGD I;  4B3S H;  1WHR A;  3D00 A;  2NU3 I;  2UUB H;  2ENZ A;  5LMU H;  2LB7 A;  1XMQ H;  2J9R A;  2XRC A;  1OMT A;  2KMP A;  2QQE A;  1TBN A;  4DNC A;  1VIG A;  1DT4 A;  1EC6 A;  4WP4 A;  1N33 H;  4OX9 H;  1LR8 A;  2N52 A;  2UUA H;  4YHH H;  4A24 A;  2SGE I;  5IT9 W;  3I0P A;  5A2Q W;  4NXN H;  4LFA H;  2ZM6 H;  1VDD A;  2UXD H;  2LUY A;  4OCH A;  4K0K H;  4PDB A;  4NBQ A;  1J5E H;  1UHA A;  3FAU A;  1ULK A;  2X52 A;  5FLX W;  2L7X A;  5CCL A;  4AQY H;  1HDL A;  1ODH A;  2QQ0 A;  2CTJ A;  5EX0 A;  1PCE A;  2GKV A;  2P2R A;  1CGI I;  2WVJ A;  1Y1C A;  4GKK H;  2GIV A;  1X4S A;  4JVH A;  4B3M H;  1N36 H;  2GKR I;  1XNQ H;  2X06 A;  3R5B A;  4LF9 H;  4WAN A;  2ELI A;  4DV3 H;  1FJG H;  1Q9B A;  2KMR A;  3FSX A;  1BUS A;  3OXF A;  1XX6 A;  1CT0 I;  1HPT A;  3SB1 A;  1PQX A;  1SEI A;  5BR8 H;  2JA1 A;  3L7Z C;  2NU4 I;  1IBL H;  4QMF B;  1SGE I;  3R5C A;  1NUB A;  2FFM A;  2PY9 A;  1LR9 A;  4JVY A;  5HQ8 A;  1HJA I;  3GOX A;  1X4N A;  2DKV A;  3E59 A;  1Z2I A;  2UU9 H;  4NZT M;  4LF8 H;  1WE8 A;  2HH2 A;  2LF0 A;  1UVG A;  5C0X G;  1UG8 A;  2O4C A;  1Z7K B;  2UXC H;  2J87 A;  4EC5 A;  2OU2 A;  3QAH A;  1Y1B A;  1KHM A;  1VBI A;  1XBT A;  2JW6 A;  2CWG A;  2PQ8 A;  4DR3 H;  1PTQ A;  2JEB I;  2CWF A;  4FJS A;  1LR7 A;  4DR1 H;  1S03 G;  3FSY A;  1K7V A;  2BL5 A;  2M5X A;  3J81 W;  1UUC A;  4NXM H;  2NU0 I;  4X66 H;  1NXU A;  3GR5 A;  5E3Q A;  4AML A;  1TBR R;  4X64 H;  3VDU A;  1ZZJ A;  2JXD A;  2K9H A;  3UEJ A;  4JI2 H;  4LF7 H;  2OD1 A;  3UGD A;  1V8C A;  1M8B A;  7WGA A;  1SGY I;  1V1H A;  4DV0 H; 
#chains in the Genus database with same CATH homology
 1V9N A;  4FJU A;  2CWH A;  3UOE A;  1XRH A;  1WTJ A;  2G8Y A;  1Z2I A;  2X06 A;  1X0A A;  3I0P A;  4H8A A;  2CWF A;  4FJS A;  1S20 A;  1VBI A;  1NXU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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