2ANRA

Crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna hairpin
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
176
structure length
155
Chain Sequence
GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPLQNRVVTVSGEPEQNRKAVELIIQKIQEDPQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna-binding protein/rna
molecule keywords 5'-R(*CP*(5BU)P*CP*GP*CP*GP*GP*AP*UP*CP*AP*GP*UP*CP*AP*CP*CP
publication title Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1.
pubmed doi rcsb
source organism Homo sapiens
total genus 43
structure length 155
sequence length 176
ec nomenclature
pdb deposition date 2005-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2anrA01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2anrA02
2CTKA 2PY9A 2CTLA 2JA9A 1TUAA 2ANRA 2CTJA 1WE8A 2JZXA 2P2RA 2PQUA 3L7ZC 2BA0A 2HH3A 2YQRA 1VIGA 2HH2A 2Z0SA 3V69A 5JEAG 4JVYA 1DT4A 4BA1I 1ZZKA 1WVNA 2AXYA 2JEBI 4OO1G 1J4WA 2CPQA 2CTEA 4QMFB 2BL5A 1ZZJA 2DGRA 4BA2I 2JVZA 4JVHA 3AEVB 4B8TA 4WALA 1X4MA 1X4NA 5K36G 2E3UA 2FMRA 2OPUA 1DTJA 2JE6I 2OPVA 3VKEA 2QNDA 2CTMA 3U1KA 1EC6A 1ZZIA 1KHMA 2MJHA 2CTFA 4LIJA 1K1GA 1ZTGA 2ANNA 2JEAI 1J5KA 4IFDG 4NBQA 2NN6G 5C0XG 4AM3A 1VIHA 4WANA 4AIMA
chains in the Genus database with same CATH superfamily
2CTKA 2UUCH 2P2RA 2PY9A 4DV7H 3I0PA 4K0KH 1WHRA 2Z0SA 2HHHH 4FJSA 5BR8H 4B3MH 1HNZH 1HR0H 4JI7H 1HNXH 1XMOH 4X65H 1ZZKA 4OO1G 1N33H 1HNWH 2X06A 1NXUA 1PQXA 2UUBH 2BL5A 2LF0A 1Z2IA 2JVZA 5DT9A 1X4NA 2FMRA 4JI2H 3UOEA 4JI4H 2A1SA 1DTJA 2OPVA 3J80W 1IBMH 2VKCA 1N36H 4YHHH 2CTMA 3OETA 3U1KA 1EC6A 2O4CA 4OCHA 4B3TH 2ANNA 4IFDG 4JV5H 2CWHA 5C0XG 4X66H 1V8CA 4DV0H 1IBLH 4DUYH 4AQYH 1UG8A 4JI3H 3AEVB 2ZM6H 2UU9H 4NXNH 2CTLA 4LF9H 1TUAA 4DV4H 2JZXA 4FJUA 2BA0A 2HH3A 3GABA 2VQFH 4JI1H 4DV6H 4PDBA 4JVYA 1DT4A 2F4VH 3GR5A 2M8WA 5IT9W 2JEBI 2FPHX 2CPMA 4E9JA 3JAMW 1F0XA 4BA2I 4DR3H 4OD6A 3OTOH 4B8TA 2PT7G 1X4MA 4DR5H 1IBKH 3EZJA 2UUAH 3J81W 1XNRH 5LMUH 1X9ZA 3NCVA 4G08A 4X64H 4LFCH 2UXCH 2MJHA 1S03G 1XRHA 4H8AA 2LTMA 1ODHA 2NN6G 4B3RH 1VIHA 2VQEH 1WTJA 2E5LH 4AM3A 4WANA 4JI8H 2Y3MA 4GKKH 2FFMA 2PQUA 3L7ZC 4DV2H 4YY3H 3V69A 1VIGA 1MSZA 2HH2A 5FLXW 2K1HA 5JEAG 4DR7H 4DR1H 1N32H 2UXBH 4LFAH 1WVNA 4DR4H 1VBIA 1I94H 1J4WA 3J7AK 4JYAH 2G8YA 1AN7A 2CPQA 5K36G 4LF6H 4JVHA 4LF5H 1FKAH 1SEIA 2JE6I 2LTLA 3VKEA 2QNDA 1I6UA 3SB1A 1ZZIA 1J5EH 1V9NA 5A2QW 2JEAI 3T1HH 4KHPH 1XMQH 4DV1H 5IWAH 4DV5H 1N34H 3T1YH 4DR2H 4AIMA 3QD7X 3FAUA 3OSSD 2JA9A 4LF4H 2ANRA 2CTJA 1WE8A 4GKJH 2YQRA 4OX9H 1FJGH 4DR6H 3GKUA 5LL6b 2UXDH 4JI6H 4BA1I 4B3SH 2AXYA 4DUZH 2M6QA 3KDKA 4LF7H 4JI0H 2CTEA 4LFBH 1ZZJA 1X0AA 2DGRA 4B8CD 4NXMH 3RF2A 2CWFA 2ZQEA 4WALA 2E3UA 2OPUA 4NZRM 5LMNH 1XNQH 4LF8H 4JI5H 2D9IA 1KHMA 2CTFA 4LIJA 1K1GA 1ZTGA 1J5KA 3KDGA 4NBQA 1S20A 4EC5A 4DV3H 4X62H 4QMFB 2LRRA 4NZTM
chains in the Genus database with same CATH topology
2CTKA 2PY9A 2CTLA 2JA9A 1TUAA 2ANRA 2CTJA 1WE8A 2JZXA 2P2RA 2PQUA 3L7ZC 2BA0A 2HH3A 2YQRA 1VIGA 2HH2A 2Z0SA 3V69A 5JEAG 4JVYA 1DT4A 4BA1I 1ZZKA 1WVNA 2AXYA 2JEBI 4OO1G 1J4WA 2CPQA 2CTEA 4QMFB 2BL5A 1ZZJA 2DGRA 4BA2I 2JVZA 4JVHA 3AEVB 4B8TA 4WALA 1X4MA 1X4NA 5K36G 2E3UA 2FMRA 2OPUA 1DTJA 2JE6I 2OPVA 3VKEA 2QNDA 2CTMA 3U1KA 1EC6A 1ZZIA 1KHMA 2MJHA 2CTFA 4LIJA 1K1GA 1ZTGA 2ANNA 2JEAI 1J5KA 4IFDG 4NBQA 2NN6G 5C0XG 4AM3A 1VIHA 4WANA 4AIMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CTK A;  2PY9 A;  2CTL A;  2JA9 A;  1TUA A;  2ANR A;  2CTJ A;  1WE8 A;  2JZX A;  2P2R A;  2PQU A;  3L7Z C;  2BA0 A;  2HH3 A;  2YQR A;  1VIG A;  2HH2 A;  2Z0S A;  3V69 A;  5JEA G;  4JVY A;  1DT4 A;  4BA1 I;  1ZZK A;  1WVN A;  2AXY A;  2JEB I;  4OO1 G;  1J4W A;  2CPQ A;  2CTE A;  4QMF B;  2BL5 A;  1ZZJ A;  2DGR A;  4BA2 I;  2JVZ A;  4JVH A;  3AEV B;  4B8T A;  4WAL A;  1X4M A;  1X4N A;  5K36 G;  2E3U A;  2FMR A;  2OPU A;  1DTJ A;  2JE6 I;  2OPV A;  3VKE A;  2QND A;  2CTM A;  3U1K A;  1EC6 A;  1ZZI A;  1KHM A;  2MJH A;  2CTF A;  4LIJ A;  1K1G A;  1ZTG A;  2ANN A;  2JEA I;  1J5K A;  4IFD G;  4NBQ A;  2NN6 G;  5C0X G;  4AM3 A;  1VIH A;  4WAN A;  4AIM A; 
#chains in the Genus database with same CATH topology
 2CTK A;  2UUC H;  2P2R A;  2PY9 A;  4DV7 H;  3I0P A;  4K0K H;  1WHR A;  2Z0S A;  2HHH H;  4FJS A;  5BR8 H;  4B3M H;  1HNZ H;  1HR0 H;  4JI7 H;  1HNX H;  1XMO H;  4X65 H;  1ZZK A;  4OO1 G;  1N33 H;  1HNW H;  2X06 A;  1NXU A;  1PQX A;  2UUB H;  2BL5 A;  2LF0 A;  1Z2I A;  2JVZ A;  5DT9 A;  1X4N A;  2FMR A;  4JI2 H;  3UOE A;  4JI4 H;  2A1S A;  1DTJ A;  2OPV A;  3J80 W;  1IBM H;  2VKC A;  1N36 H;  4YHH H;  2CTM A;  3OET A;  3U1K A;  1EC6 A;  2O4C A;  4OCH A;  4B3T H;  2ANN A;  4IFD G;  4JV5 H;  2CWH A;  5C0X G;  4X66 H;  1V8C A;  4DV0 H;  1IBL H;  4DUY H;  4AQY H;  1UG8 A;  4JI3 H;  3AEV B;  2ZM6 H;  2UU9 H;  4NXN H;  2CTL A;  4LF9 H;  1TUA A;  4DV4 H;  2JZX A;  4FJU A;  2BA0 A;  2HH3 A;  3GAB A;  2VQF H;  4JI1 H;  4DV6 H;  4PDB A;  4JVY A;  1DT4 A;  2F4V H;  3GR5 A;  2M8W A;  5IT9 W;  2JEB I;  2FPH X;  2CPM A;  4E9J A;  3JAM W;  1F0X A;  4BA2 I;  4DR3 H;  4OD6 A;  3OTO H;  4B8T A;  2PT7 G;  1X4M A;  4DR5 H;  1IBK H;  3EZJ A;  2UUA H;  3J81 W;  1XNR H;  5LMU H;  1X9Z A;  3NCV A;  4G08 A;  4X64 H;  4LFC H;  2UXC H;  2MJH A;  1S03 G;  1XRH A;  4H8A A;  2LTM A;  1ODH A;  2NN6 G;  4B3R H;  1VIH A;  2VQE H;  1WTJ A;  2E5L H;  4AM3 A;  4WAN A;  4JI8 H;  2Y3M A;  4GKK H;  2FFM A;  2PQU A;  3L7Z C;  4DV2 H;  4YY3 H;  3V69 A;  1VIG A;  1MSZ A;  2HH2 A;  5FLX W;  2K1H A;  5JEA G;  4DR7 H;  4DR1 H;  1N32 H;  2UXB H;  4LFA H;  1WVN A;  4DR4 H;  1VBI A;  1I94 H;  1J4W A;  3J7A K;  4JYA H;  2G8Y A;  1AN7 A;  2CPQ A;  5K36 G;  4LF6 H;  4JVH A;  4LF5 H;  1FKA H;  1SEI A;  2JE6 I;  2LTL A;  3VKE A;  2QND A;  1I6U A;  3SB1 A;  1ZZI A;  1J5E H;  1V9N A;  5A2Q W;  2JEA I;  3T1H H;  4KHP H;  1XMQ H;  4DV1 H;  5IWA H;  4DV5 H;  1N34 H;  3T1Y H;  4DR2 H;  4AIM A;  3QD7 X;  3FAU A;  3OSS D;  2JA9 A;  4LF4 H;  2ANR A;  2CTJ A;  1WE8 A;  4GKJ H;  2YQR A;  4OX9 H;  1FJG H;  4DR6 H;  3GKU A;  5LL6 b;  2UXD H;  4JI6 H;  4BA1 I;  4B3S H;  2AXY A;  4DUZ H;  2M6Q A;  3KDK A;  4LF7 H;  4JI0 H;  2CTE A;  4LFB H;  1ZZJ A;  1X0A A;  2DGR A;  4B8C D;  4NXM H;  3RF2 A;  2CWF A;  2ZQE A;  4WAL A;  2E3U A;  2OPU A;  4NZR M;  5LMN H;  1XNQ H;  4LF8 H;  4JI5 H;  2D9I A;  1KHM A;  2CTF A;  4LIJ A;  1K1G A;  1ZTG A;  1J5K A;  3KDG A;  4NBQ A;  1S20 A;  4EC5 A;  4DV3 H;  4X62 H;  4QMF B;  2LRR A;  4NZT M; 
#chains in the Genus database with same CATH homology
 2CTK A;  2PY9 A;  2CTL A;  2JA9 A;  1TUA A;  2ANR A;  2CTJ A;  1WE8 A;  2JZX A;  2P2R A;  2PQU A;  3L7Z C;  2BA0 A;  2HH3 A;  2YQR A;  1VIG A;  2HH2 A;  2Z0S A;  3V69 A;  5JEA G;  4JVY A;  1DT4 A;  4BA1 I;  1ZZK A;  1WVN A;  2AXY A;  2JEB I;  4OO1 G;  1J4W A;  2CPQ A;  2CTE A;  4QMF B;  2BL5 A;  1ZZJ A;  2DGR A;  4BA2 I;  2JVZ A;  4JVH A;  3AEV B;  4B8T A;  4WAL A;  1X4M A;  1X4N A;  5K36 G;  2E3U A;  2FMR A;  2OPU A;  1DTJ A;  2JE6 I;  2OPV A;  3VKE A;  2QND A;  2CTM A;  3U1K A;  1EC6 A;  1ZZI A;  1KHM A;  2MJH A;  2CTF A;  4LIJ A;  1K1G A;  1ZTG A;  2ANN A;  2JEA I;  1J5K A;  4IFD G;  4NBQ A;  2NN6 G;  5C0X G;  4AM3 A;  1VIH A;  4WAN A;  4AIM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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