2VKCA

Solution structure of the b3bp smr domain
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
105
structure length
105
Chain Sequence
MKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NEDD4-BINDING PROTEIN 2
publication title Solution Structure and Characterization of the DNA- Binding Activity of the B3BP-Smr Domain.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Hydrolase
total genus 32
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2007-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 2vkcA00
2ZQEA 3QD7X 3FAUA 2D9IA 4OCHA 4OD6A 2VKCA
chains in the Genus database with same CATH superfamily
4JI6H 1IBLH 4EC5A 4GKJH 3NCVA 1DT4A 4LF7H 2HH2A 2QNDA 4H8AA 5BR8H 4DV7H 2O4CA 3KDGA 2PT7G 5LMNH 2BL5A 2HH3A 2CWFA 3OETA 3JAMW 4B8TA 5K36G 2JEAI 4X66H 1DTJA 3EZJA 1XNRH 2CWHA 1HNWH 4NZTM 4X65H 2FPHX 4B3RH 4E9JA 2E5LH 2D9IA 4NBQA 2OPUA 2FFMA 2ZM6H 1TUAA 2DGRA 4WALA 1IBKH 4DV2H 5LMUH 2OPVA 3AEVB 2UXCH 1X4MA 5JEAG 2M8WA 1S03G 4B3TH 4YHHH 2LTLA 3GABA 3RF2A 4X62H 1ZZIA 2JE6I 2LTMA 4FJSA 4BA2I 1SEIA 3OSSD 4B8CD 2VKCA 2A1SA 2CTJA 2K1HA 2E3UA 3U1KA 1KHMA 1XMQH 2M6QA 4G08A 4FJUA 4JI5H 3T1YH 4DV1H 3FAUA 5IT9W 2JA9A 2AXYA 1ZTGA 4LF8H 4GKKH 1ZZKA 3OTOH 4DV3H 2UUAH 3GKUA 1MSZA 1X9ZA 4OX9H 2LRRA 1EC6A 4LF6H 4DUYH 4DR2H 1J4WA 2F4VH 4DR5H 5FLXW 4DV4H 4JI3H 2UUCH 1IBMH 4WANA 4JYAH 1V9NA 1WHRA 1UG8A 2PQUA 2UU9H 4LF5H 1NXUA 4DR6H 1XNQH 3I0PA 5LL6b 3KDKA 4DR3H 4LFAH 1F0XA 2X06A 3L7ZC 2CTFA 1J5EH 1WTJA 4JI0H 2ANNA 1VBIA 1N34H 4OD6A 4QMFB 1VIHA 4AM3A 2MJHA 4DR1H 2JZXA 2NN6G 1PQXA 2JEBI 4LFBH 1S20A 2FMRA 1HR0H 3T1HH 4LF9H 4OO1G 4DV5H 2PY9A 4AQYH 2ZQEA 1X4NA 2VQFH 2P2RA 4JI1H 4OCHA 2CTKA 3SB1A 1WE8A 2UUBH 4KHPH 4LFCH 3VKEA 4AIMA 4DR7H 4K0KH 2CPQA 3J7AK 4DV0H 2YQRA 4BA1I 4NXMH 4JV5H 4LF4H 4DR4H 2JVZA 1ZZJA 2BA0A 2CTMA 4DV6H 1Z2IA 2VQEH 4JI4H 2LF0A 2Y3MA 4X64H 4DUZH 1I6UA 1X0AA 4JI7H 4JVHA 1J5KA 2HHHH 4NXNH 1N33H 4YY3H 2Z0SA 1N36H 1V8CA 3QD7X 4B3SH 1XMOH 1I94H 4JI2H 3UOEA 2UXBH 1N32H 1XRHA 2G8YA 5DT9A 5IWAH 3GR5A 3J81W 2UXDH 1FKAH 2CTEA 1K1GA 4IFDG 1AN7A 1HNXH 4B3MH 5A2QW 5C0XG 1FJGH 4PDBA 2ANRA 1WVNA 3J80W 4JVYA 1ODHA 4LIJA 2CTLA 4JI8H 4NZRM 1VIGA 2CPMA 1HNZH 3V69A
chains in the Genus database with same CATH topology
4JI6H 1IBLH 4EC5A 4GKJH 3NCVA 4LF7H 5BR8H 4DV7H 2O4CA 3KDGA 2PT7G 5LMNH 3JAMW 3OETA 4X66H 3EZJA 1XNRH 1HNWH 4NZTM 4X65H 2FPHX 4B3RH 4E9JA 2E5LH 2D9IA 2ZM6H 1IBKH 4DV2H 5LMUH 2UXCH 1S03G 4B3TH 4YHHH 3GABA 3RF2A 4X62H 1SEIA 3OSSD 4B8CD 2VKCA 1XMQH 4G08A 4JI5H 3T1YH 4DV1H 3FAUA 5IT9W 4LF8H 4GKKH 3OTOH 4DV3H 2UUAH 4OX9H 1X9ZA 4LF6H 4DUYH 4DR2H 2F4VH 4DR5H 5FLXW 4DV4H 4JI3H 2UUCH 1IBMH 4JYAH 2UU9H 4LF5H 4DR6H 1XNQH 5LL6b 3KDKA 4DR3H 4LFAH 1F0XA 1J5EH 4JI0H 1N34H 4OD6A 4DR1H 4LFBH 1HR0H 3T1HH 4LF9H 4DV5H 4AQYH 2ZQEA 2VQFH 4JI1H 4OCHA 3SB1A 2UUBH 4KHPH 4LFCH 4DR7H 4K0KH 3J7AK 4DV0H 4NXMH 4JV5H 4LF4H 4DR4H 2VQEH 4JI4H 2LF0A 2Y3MA 4X64H 4DUZH 1I6UA 4JI7H 2HHHH 4NXNH 1N33H 4YY3H 1N36H 3QD7X 4B3SH 1XMOH 1I94H 4JI2H 2UXBH 1N32H 5DT9A 5IWAH 3GR5A 3J81W 2UXDH 1FKAH 1AN7A 1HNXH 4B3MH 5A2QW 4PDBA 1FJGH 3J80W 1ODHA 4JI8H 4NZRM 4DV6H 1HNZH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZQE A;  3QD7 X;  3FAU A;  2D9I A;  4OCH A;  4OD6 A;  2VKC A; 
#chains in the Genus database with same CATH topology
 4JI6 H;  1IBL H;  4EC5 A;  4GKJ H;  3NCV A;  1DT4 A;  4LF7 H;  2HH2 A;  2QND A;  4H8A A;  5BR8 H;  4DV7 H;  2O4C A;  3KDG A;  2PT7 G;  5LMN H;  2BL5 A;  2HH3 A;  2CWF A;  3OET A;  3JAM W;  4B8T A;  5K36 G;  2JEA I;  4X66 H;  1DTJ A;  3EZJ A;  1XNR H;  2CWH A;  1HNW H;  4NZT M;  4X65 H;  2FPH X;  4B3R H;  4E9J A;  2E5L H;  2D9I A;  4NBQ A;  2OPU A;  2FFM A;  2ZM6 H;  1TUA A;  2DGR A;  4WAL A;  1IBK H;  4DV2 H;  5LMU H;  2OPV A;  3AEV B;  2UXC H;  1X4M A;  5JEA G;  2M8W A;  1S03 G;  4B3T H;  4YHH H;  2LTL A;  3GAB A;  3RF2 A;  4X62 H;  1ZZI A;  2JE6 I;  2LTM A;  4FJS A;  4BA2 I;  1SEI A;  3OSS D;  4B8C D;  2VKC A;  2A1S A;  2CTJ A;  2K1H A;  2E3U A;  3U1K A;  1KHM A;  1XMQ H;  2M6Q A;  4G08 A;  4FJU A;  4JI5 H;  3T1Y H;  4DV1 H;  3FAU A;  5IT9 W;  2JA9 A;  2AXY A;  1ZTG A;  4LF8 H;  4GKK H;  1ZZK A;  3OTO H;  4DV3 H;  2UUA H;  3GKU A;  1MSZ A;  1X9Z A;  4OX9 H;  2LRR A;  1EC6 A;  4LF6 H;  4DUY H;  4DR2 H;  1J4W A;  2F4V H;  4DR5 H;  5FLX W;  4DV4 H;  4JI3 H;  2UUC H;  1IBM H;  4WAN A;  4JYA H;  1V9N A;  1WHR A;  1UG8 A;  2PQU A;  2UU9 H;  4LF5 H;  1NXU A;  4DR6 H;  1XNQ H;  3I0P A;  5LL6 b;  3KDK A;  4DR3 H;  4LFA H;  1F0X A;  2X06 A;  3L7Z C;  2CTF A;  1J5E H;  1WTJ A;  4JI0 H;  2ANN A;  1VBI A;  1N34 H;  4OD6 A;  4QMF B;  1VIH A;  4AM3 A;  2MJH A;  4DR1 H;  2JZX A;  2NN6 G;  1PQX A;  2JEB I;  4LFB H;  1S20 A;  2FMR A;  1HR0 H;  3T1H H;  4LF9 H;  4OO1 G;  4DV5 H;  2PY9 A;  4AQY H;  2ZQE A;  1X4N A;  2VQF H;  2P2R A;  4JI1 H;  4OCH A;  2CTK A;  3SB1 A;  1WE8 A;  2UUB H;  4KHP H;  4LFC H;  3VKE A;  4AIM A;  4DR7 H;  4K0K H;  2CPQ A;  3J7A K;  4DV0 H;  2YQR A;  4BA1 I;  4NXM H;  4JV5 H;  4LF4 H;  4DR4 H;  2JVZ A;  1ZZJ A;  2BA0 A;  2CTM A;  4DV6 H;  1Z2I A;  2VQE H;  4JI4 H;  2LF0 A;  2Y3M A;  4X64 H;  4DUZ H;  1I6U A;  1X0A A;  4JI7 H;  4JVH A;  1J5K A;  2HHH H;  4NXN H;  1N33 H;  4YY3 H;  2Z0S A;  1N36 H;  1V8C A;  3QD7 X;  4B3S H;  1XMO H;  1I94 H;  4JI2 H;  3UOE A;  2UXB H;  1N32 H;  1XRH A;  2G8Y A;  5DT9 A;  5IWA H;  3GR5 A;  3J81 W;  2UXD H;  1FKA H;  2CTE A;  1K1G A;  4IFD G;  1AN7 A;  1HNX H;  4B3M H;  5A2Q W;  5C0X G;  1FJG H;  4PDB A;  2ANR A;  1WVN A;  3J80 W;  4JVY A;  1ODH A;  4LIJ A;  2CTL A;  4JI8 H;  4NZR M;  1VIG A;  2CPM A;  1HNZ H;  3V69 A; 
#chains in the Genus database with same CATH homology
 4JI6 H;  1IBL H;  4EC5 A;  4GKJ H;  3NCV A;  4LF7 H;  5BR8 H;  4DV7 H;  2O4C A;  3KDG A;  2PT7 G;  5LMN H;  3JAM W;  3OET A;  4X66 H;  3EZJ A;  1XNR H;  1HNW H;  4NZT M;  4X65 H;  2FPH X;  4B3R H;  4E9J A;  2E5L H;  2D9I A;  2ZM6 H;  1IBK H;  4DV2 H;  5LMU H;  2UXC H;  1S03 G;  4B3T H;  4YHH H;  3GAB A;  3RF2 A;  4X62 H;  1SEI A;  3OSS D;  4B8C D;  2VKC A;  1XMQ H;  4G08 A;  4JI5 H;  3T1Y H;  4DV1 H;  3FAU A;  5IT9 W;  4LF8 H;  4GKK H;  3OTO H;  4DV3 H;  2UUA H;  4OX9 H;  1X9Z A;  4LF6 H;  4DUY H;  4DR2 H;  2F4V H;  4DR5 H;  5FLX W;  4DV4 H;  4JI3 H;  2UUC H;  1IBM H;  4JYA H;  2UU9 H;  4LF5 H;  4DR6 H;  1XNQ H;  5LL6 b;  3KDK A;  4DR3 H;  4LFA H;  1F0X A;  1J5E H;  4JI0 H;  1N34 H;  4OD6 A;  4DR1 H;  4LFB H;  1HR0 H;  3T1H H;  4LF9 H;  4DV5 H;  4AQY H;  2ZQE A;  2VQF H;  4JI1 H;  4OCH A;  3SB1 A;  2UUB H;  4KHP H;  4LFC H;  4DR7 H;  4K0K H;  3J7A K;  4DV0 H;  4NXM H;  4JV5 H;  4LF4 H;  4DR4 H;  2VQE H;  4JI4 H;  2LF0 A;  2Y3M A;  4X64 H;  4DUZ H;  1I6U A;  4JI7 H;  2HHH H;  4NXN H;  1N33 H;  4YY3 H;  1N36 H;  3QD7 X;  4B3S H;  1XMO H;  1I94 H;  4JI2 H;  2UXB H;  1N32 H;  5DT9 A;  5IWA H;  3GR5 A;  3J81 W;  2UXD H;  1FKA H;  1AN7 A;  1HNX H;  4B3M H;  5A2Q W;  4PDB A;  1FJG H;  3J80 W;  1ODH A;  4JI8 H;  4NZR M;  4DV6 H;  1HNZ H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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