2VKCA

Solution structure of the b3bp smr domain
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
105
structure length
105
Chain Sequence
b'MKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NEDD4-BINDING PROTEIN 2
publication title Solution Structure and Characterization of the DNA- Binding Activity of the B3BP-Smr Domain.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Hydrolase
total genus 32
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2007-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 2vkcA00
3FAUA 3QD7X 2VKCA 4OD6A 2D9IA 4OCHA 2ZQEA
chains in the Genus database with same CATH superfamily
2FMRA 3GR5A 2E5LH 4DUZH 4NZTM 1X4MA 3T1YH 2PQUA 2D9IA 1VIGA 2Y3MA 3OSSD 2AXYA 1XMOH 3OTOH 3OETA 4JI8H 2QNDA 3V69A 4JI0H 4JI5H 2M8WA 2JVZA 4LFAH 4JV5H 1XRHA 4YHHH 4DV1H 4DR6H 4JVHA 2PY9A 1ZZKA 4BA2I 1PQXA 3KDGA 4DR5H 2ANNA 4LF6H 4B3SH 1UG8A 4NXMH 2LTLA 1FKAH 4OO1G 1IBKH 1WTJA 4X65H 2BL5A 2JZXA 2CTFA 1DTJA 1DT4A 2FFMA 4JI3H 1XNQH 1HNXH 4JYAH 4DR3H 4DV6H 4X66H 4JI6H 4LIJA 1F0XA 1X9ZA 1N33H 5LMNH 3UOEA 2O4CA 1FJGH 1XNRH 4DV7H 4DR2H 1N36H 5IWAH 1TUAA 2CWHA 3KDKA 3J81W 3T1HH 4LF4H 2CTJA 1WVNA 4DV4H 4AQYH 4NZRM 3JAMW 4LF7H 4JI1H 4GKJH 2UXDH 4DR7H 5C0XG 1VBIA 3U1KA 2LRRA 1K1GA 4DV5H 4JI4H 4FJUA 3SB1A 1Z2IA 2BA0A 5JEAG 1V8CA 3J80W 2UUCH 1N34H 4LFCH 2HH3A 1ODHA 5K36G 2LTMA 4OCHA 4OX9H 4K0KH 2CWFA 2PT7G 3GKUA 4NXNH 1N32H 4EC5A 4B3MH 1HNWH 2UU9H 2NN6G 4DUYH 2MJHA 4JI7H 2ZQEA 2F4VH 1J4WA 1J5EH 2CTEA 1KHMA 4B8CD 4LFBH 1NXUA 3GABA 2DGRA 2JE6I 4G08A 3RF2A 2JEAI 4B8TA 2VQFH 5IT9W 2A1SA 4GKKH 1V9NA 1MSZA 1EC6A 2JEBI 2OPUA 5LL6b 4YY3H 4JVYA 4WANA 2K1HA 2Z0SA 4LF5H 4LF8H 2CPQA 2HHHH 4B3RH 3EZJA 3NCVA 2FPHX 5FLXW 5LMUH 4X62H 1XMQH 2P2RA 4LF9H 1ZTGA 4KHPH 5A2QW 1HNZH 1S03G 4DR1H 4JI2H 1IBLH 1S20A 2JA9A 4H8AA 2CTKA 5DT9A 1X0AA 2UUAH 2CTMA 1I6UA 4NBQA 1VIHA 4PDBA 4FJSA 3FAUA 1WE8A 4DV2H 1WHRA 2UUBH 4DR4H 3L7ZC 1J5KA 1X4NA 4AM3A 2CPMA 2UXBH 1AN7A 4X64H 2M6QA 3I0PA 2CTLA 4QMFB 3J7AK 1ZZJA 4E9JA 1HR0H 4WALA 2VKCA 4OD6A 5BR8H 1IBMH 2YQRA 2HH2A 2LF0A 2ZM6H 4DV0H 4B3TH 2VQEH 2OPVA 1I94H 1SEIA 3VKEA 2E3UA 2ANRA 2X06A 2G8YA 3QD7X 1ZZIA 4BA1I 4AIMA 3AEVB 4IFDG 4DV3H 2UXCH
chains in the Genus database with same CATH topology
3GR5A 2E5LH 4DUZH 4NZTM 3T1YH 2D9IA 2Y3MA 3OSSD 1XMOH 3OTOH 3OETA 4JI8H 4JI0H 4JI5H 4LFAH 4JV5H 4YHHH 4DV1H 4DR6H 3KDGA 4DR5H 4LF6H 4B3SH 4NXMH 1FKAH 1IBKH 4X65H 4JYAH 4JI3H 1XNQH 1HNXH 4DR3H 4DV6H 4X66H 4JI6H 1F0XA 1X9ZA 1N33H 5LMNH 2O4CA 1FJGH 1XNRH 4DV7H 4DR2H 1N36H 5IWAH 3KDKA 3T1HH 4LF4H 3J81W 4DV4H 4AQYH 4NZRM 3JAMW 4LF7H 4JI1H 4GKJH 2UXDH 4DR7H 4DV5H 4JI4H 3SB1A 3J80W 2UUCH 1N34H 4LFCH 1ODHA 4OCHA 4OX9H 4K0KH 2PT7G 4NXNH 1N32H 4EC5A 4B3MH 1HNWH 2UU9H 4DUYH 4JI7H 2ZQEA 2F4VH 1J5EH 4B8CD 4LFBH 3GABA 4G08A 3RF2A 2VQFH 5IT9W 4GKKH 5LL6b 4YY3H 4LF5H 4LF8H 4B3RH 2HHHH 3EZJA 3NCVA 2FPHX 5FLXW 5LMUH 4X62H 1XMQH 4LF9H 4KHPH 5A2QW 1HNZH 1S03G 4DR1H 4JI2H 1IBLH 5DT9A 1I6UA 2UUAH 4PDBA 3FAUA 4DV2H 2UUBH 4DR4H 2UXBH 1AN7A 4X64H 3J7AK 4E9JA 1HR0H 2VKCA 4OD6A 5BR8H 1IBMH 2ZM6H 2LF0A 4DV0H 4B3TH 2VQEH 1I94H 1SEIA 3QD7X 4DV3H 2UXCH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FAU A;  3QD7 X;  2VKC A;  4OD6 A;  2D9I A;  4OCH A;  2ZQE A; 
#chains in the Genus database with same CATH topology
 2FMR A;  3GR5 A;  2E5L H;  4DUZ H;  4NZT M;  1X4M A;  3T1Y H;  2PQU A;  2D9I A;  1VIG A;  2Y3M A;  3OSS D;  2AXY A;  1XMO H;  3OTO H;  3OET A;  4JI8 H;  2QND A;  3V69 A;  4JI0 H;  4JI5 H;  2M8W A;  2JVZ A;  4LFA H;  4JV5 H;  1XRH A;  4YHH H;  4DV1 H;  4DR6 H;  4JVH A;  2PY9 A;  1ZZK A;  4BA2 I;  1PQX A;  3KDG A;  4DR5 H;  2ANN A;  4LF6 H;  4B3S H;  1UG8 A;  4NXM H;  2LTL A;  1FKA H;  4OO1 G;  1IBK H;  1WTJ A;  4X65 H;  2BL5 A;  2JZX A;  2CTF A;  1DTJ A;  1DT4 A;  2FFM A;  4JI3 H;  1XNQ H;  1HNX H;  4JYA H;  4DR3 H;  4DV6 H;  4X66 H;  4JI6 H;  4LIJ A;  1F0X A;  1X9Z A;  1N33 H;  5LMN H;  3UOE A;  2O4C A;  1FJG H;  1XNR H;  4DV7 H;  4DR2 H;  1N36 H;  5IWA H;  1TUA A;  2CWH A;  3KDK A;  3J81 W;  3T1H H;  4LF4 H;  2CTJ A;  1WVN A;  4DV4 H;  4AQY H;  4NZR M;  3JAM W;  4LF7 H;  4JI1 H;  4GKJ H;  2UXD H;  4DR7 H;  5C0X G;  1VBI A;  3U1K A;  2LRR A;  1K1G A;  4DV5 H;  4JI4 H;  4FJU A;  3SB1 A;  1Z2I A;  2BA0 A;  5JEA G;  1V8C A;  3J80 W;  2UUC H;  1N34 H;  4LFC H;  2HH3 A;  1ODH A;  5K36 G;  2LTM A;  4OCH A;  4OX9 H;  4K0K H;  2CWF A;  2PT7 G;  3GKU A;  4NXN H;  1N32 H;  4EC5 A;  4B3M H;  1HNW H;  2UU9 H;  2NN6 G;  4DUY H;  2MJH A;  4JI7 H;  2ZQE A;  2F4V H;  1J4W A;  1J5E H;  2CTE A;  1KHM A;  4B8C D;  4LFB H;  1NXU A;  3GAB A;  2DGR A;  2JE6 I;  4G08 A;  3RF2 A;  2JEA I;  4B8T A;  2VQF H;  5IT9 W;  2A1S A;  4GKK H;  1V9N A;  1MSZ A;  1EC6 A;  2JEB I;  2OPU A;  5LL6 b;  4YY3 H;  4JVY A;  4WAN A;  2K1H A;  2Z0S A;  4LF5 H;  4LF8 H;  2CPQ A;  2HHH H;  4B3R H;  3EZJ A;  3NCV A;  2FPH X;  5FLX W;  5LMU H;  4X62 H;  1XMQ H;  2P2R A;  4LF9 H;  1ZTG A;  4KHP H;  5A2Q W;  1HNZ H;  1S03 G;  4DR1 H;  4JI2 H;  1IBL H;  1S20 A;  2JA9 A;  4H8A A;  2CTK A;  5DT9 A;  1X0A A;  2UUA H;  2CTM A;  1I6U A;  4NBQ A;  1VIH A;  4PDB A;  4FJS A;  3FAU A;  1WE8 A;  4DV2 H;  1WHR A;  2UUB H;  4DR4 H;  3L7Z C;  1J5K A;  1X4N A;  4AM3 A;  2CPM A;  2UXB H;  1AN7 A;  4X64 H;  2M6Q A;  3I0P A;  2CTL A;  4QMF B;  3J7A K;  1ZZJ A;  4E9J A;  1HR0 H;  4WAL A;  2VKC A;  4OD6 A;  5BR8 H;  1IBM H;  2YQR A;  2HH2 A;  2LF0 A;  2ZM6 H;  4DV0 H;  4B3T H;  2VQE H;  2OPV A;  1I94 H;  1SEI A;  3VKE A;  2E3U A;  2ANR A;  2X06 A;  2G8Y A;  3QD7 X;  1ZZI A;  4BA1 I;  4AIM A;  3AEV B;  4IFD G;  4DV3 H;  2UXC H; 
#chains in the Genus database with same CATH homology
 3GR5 A;  2E5L H;  4DUZ H;  4NZT M;  3T1Y H;  2D9I A;  2Y3M A;  3OSS D;  1XMO H;  3OTO H;  3OET A;  4JI8 H;  4JI0 H;  4JI5 H;  4LFA H;  4JV5 H;  4YHH H;  4DV1 H;  4DR6 H;  3KDG A;  4DR5 H;  4LF6 H;  4B3S H;  4NXM H;  1FKA H;  1IBK H;  4X65 H;  4JYA H;  4JI3 H;  1XNQ H;  1HNX H;  4DR3 H;  4DV6 H;  4X66 H;  4JI6 H;  1F0X A;  1X9Z A;  1N33 H;  5LMN H;  2O4C A;  1FJG H;  1XNR H;  4DV7 H;  4DR2 H;  1N36 H;  5IWA H;  3KDK A;  3T1H H;  4LF4 H;  3J81 W;  4DV4 H;  4AQY H;  4NZR M;  3JAM W;  4LF7 H;  4JI1 H;  4GKJ H;  2UXD H;  4DR7 H;  4DV5 H;  4JI4 H;  3SB1 A;  3J80 W;  2UUC H;  1N34 H;  4LFC H;  1ODH A;  4OCH A;  4OX9 H;  4K0K H;  2PT7 G;  4NXN H;  1N32 H;  4EC5 A;  4B3M H;  1HNW H;  2UU9 H;  4DUY H;  4JI7 H;  2ZQE A;  2F4V H;  1J5E H;  4B8C D;  4LFB H;  3GAB A;  4G08 A;  3RF2 A;  2VQF H;  5IT9 W;  4GKK H;  5LL6 b;  4YY3 H;  4LF5 H;  4LF8 H;  4B3R H;  2HHH H;  3EZJ A;  3NCV A;  2FPH X;  5FLX W;  5LMU H;  4X62 H;  1XMQ H;  4LF9 H;  4KHP H;  5A2Q W;  1HNZ H;  1S03 G;  4DR1 H;  4JI2 H;  1IBL H;  5DT9 A;  1I6U A;  2UUA H;  4PDB A;  3FAU A;  4DV2 H;  2UUB H;  4DR4 H;  2UXB H;  1AN7 A;  4X64 H;  3J7A K;  4E9J A;  1HR0 H;  2VKC A;  4OD6 A;  5BR8 H;  1IBM H;  2ZM6 H;  2LF0 A;  4DV0 H;  4B3T H;  2VQE H;  1I94 H;  1SEI A;  3QD7 X;  4DV3 H;  2UXC H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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