2VKCA

Solution structure of the b3bp smr domain
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
105
structure length
105
Chain Sequence
MKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Homo sapiens
publication title Solution Structure and Characterization of the DNA- Binding Activity of the B3BP-Smr Domain.
pubmed doi rcsb
molecule keywords NEDD4-BINDING PROTEIN 2
total genus 32
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2007-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 2vkcA00
4OCHA 4OD6A 2VKCA 3FAUA 2ZQEA 2D9IA 3QD7X
chains in the Genus database with same CATH superfamily
4X65H 4LF5H 1KHMA 2HH3A 4JVYA 4IFDG 1N33H 2OPUA 4B3MH 1WVNA 4JI2H 4E9JA 2G8YA 3SB1A 1ZZIA 4DR7H 3JAMW 4X66H 1VIHA 2MJHA 2LTMA 2UXDH 3FAUA 2LTLA 2CTJA 1XMQH 4LF4H 3L7ZC 1N34H 1TUAA 2M6QA 1IBMH 2F4VH 2YQRA 2JA9A 3GR5A 4LF8H 4DV6H 4BA1I 4B8TA 4DV1H 4DV7H 4DV2H 5LMNH 2CPQA 4JI4H 2O4CA 1AN7A 4AQYH 1IBKH 2ZM6H 1N32H 4OD6A 1X4NA 4DUYH 1Z2IA 3KDGA 4DR2H 1UG8A 2E5LH 4JI6H 1HR0H 3UOEA 4DUZH 2FMRA 1MSZA 4DR3H 2ANRA 4LF9H 4NXNH 3AEVB 1WTJA 1EC6A 5K36G 2BL5A 2E3UA 1J5EH 1HNZH 1XNQH 4G08A 5JEAG 4LIJA 4DV3H 5BR8H 3OETA 1F0XA 2OPVA 4NZTM 3T1HH 2JEBI 1J4WA 2PQUA 4DV0H 2UUAH 4JV5H 2UXCH 2HH2A 4X64H 2FFMA 4JVHA 1NXUA 1IBLH 1FJGH 4BA2I 1S20A 3J81W 1ODHA 4PDBA 5C0XG 1K1GA 2P2RA 4LFBH 1SEIA 4DV4H 4WANA 3GKUA 1V8CA 4OCHA 1V9NA 2UUBH 3J80W 2JZXA 2LRRA 5LMUH 2QNDA 1ZZJA 4KHPH 2ANNA 4X62H 5IWAH 1ZTGA 2D9IA 4JI1H 3OTOH 5A2QW 2K1HA 5LL6b 1I6UA 1PQXA 4OO1G 2VQFH 2JVZA 2PY9A 3J7AK 1S03G 4B3SH 3GABA 4AIMA 2M8WA 4B3RH 3NCVA 2JE6I 2CWFA 4DR1H 4OX9H 2CTFA 2AXYA 1XNRH 2VQEH 2JEAI 2PT7G 1X4MA 1X9ZA 1VIGA 2UXBH 4DV5H 1X0AA 4GKKH 4DR4H 4DR6H 4JYAH 4LF6H 3I0PA 4B3TH 4NXMH 1HNWH 5FLXW 4LF7H 4QMFB 4K0KH 2BA0A 3OSSD 1XMOH 4JI3H 2HHHH 1VBIA 3V69A 3VKEA 4AM3A 1WHRA 4H8AA 4JI0H 2LF0A 2NN6G 2FPHX 4FJUA 2Z0SA 1ZZKA 4B8CD 3T1YH 5DT9A 2A1SA 2UU9H 3RF2A 5IT9W 1HNXH 2DGRA 1I94H 4YHHH 4EC5A 2VKCA 2CTMA 2ZQEA 1N36H 1WE8A 4JI8H 3EZJA 1FKAH 1J5KA 4FJSA 4WALA 2CTLA 2X06A 2Y3MA 2CTKA 1DTJA 1XRHA 1DT4A 2CPMA 3KDKA 4NBQA 4YY3H 2CWHA 2UUCH 2CTEA 4DR5H 4LFCH 4JI7H 4LFAH 4GKJH 3U1KA 4JI5H 3QD7X 4NZRM
chains in the Genus database with same CATH topology
4X65H 4LF5H 1N33H 4B3MH 4JI2H 4E9JA 3SB1A 4DR7H 4X66H 2UXDH 3FAUA 1XMQH 4LF4H 1N34H 1IBMH 2F4VH 3GR5A 4LF8H 4DV6H 4DV1H 4DV7H 4DV2H 5LMNH 4JI4H 1AN7A 2O4CA 4AQYH 1IBKH 2ZM6H 1N32H 4OD6A 4DUYH 4DR2H 3KDGA 2E5LH 4JI6H 1HR0H 4DUZH 4NXNH 4DR3H 4LF9H 1HNZH 1J5EH 1XNQH 4G08A 4DV3H 5BR8H 3OETA 1F0XA 3T1HH 4NZTM 4JV5H 4DV0H 2UUAH 2UXCH 4X64H 1IBLH 1FJGH 3J81W 1ODHA 4PDBA 4LFBH 1SEIA 4DV4H 4OCHA 2UUBH 3J80W 5LMUH 4KHPH 4X62H 5IWAH 2D9IA 4JI1H 3OTOH 5A2QW 1I6UA 5LL6b 2VQFH 3J7AK 1S03G 4B3SH 3GABA 4B3RH 3NCVA 4DR1H 4OX9H 1XNRH 2VQEH 1X9ZA 2PT7G 2UXBH 4DV5H 4GKKH 4DR4H 4DR6H 4JYAH 4LF6H 4B3TH 1HNWH 4NXMH 5FLXW 4LF7H 3OSSD 1XMOH 4JI3H 2HHHH 4JI0H 2LF0A 2FPHX 3T1YH 4B8CD 5DT9A 2UU9H 3RF2A 5IT9W 1HNXH 1I94H 4YHHH 4EC5A 2VKCA 2ZQEA 1N36H 4JI8H 3EZJA 1FKAH 4NZRM 4K0KH 2Y3MA 3KDKA 4YY3H 4LFCH 2UUCH 4DR5H 4JI7H 4LFAH 4GKJH 4JI5H 3QD7X 3JAMW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OCH A;  4OD6 A;  2VKC A;  3FAU A;  2ZQE A;  2D9I A;  3QD7 X; 
#chains in the Genus database with same CATH topology
 4X65 H;  4LF5 H;  1KHM A;  2HH3 A;  4JVY A;  4IFD G;  1N33 H;  2OPU A;  4B3M H;  1WVN A;  4JI2 H;  4E9J A;  2G8Y A;  3SB1 A;  1ZZI A;  4DR7 H;  3JAM W;  4X66 H;  1VIH A;  2MJH A;  2LTM A;  2UXD H;  3FAU A;  2LTL A;  2CTJ A;  1XMQ H;  4LF4 H;  3L7Z C;  1N34 H;  1TUA A;  2M6Q A;  1IBM H;  2F4V H;  2YQR A;  2JA9 A;  3GR5 A;  4LF8 H;  4DV6 H;  4BA1 I;  4B8T A;  4DV1 H;  4DV7 H;  4DV2 H;  5LMN H;  2CPQ A;  4JI4 H;  2O4C A;  1AN7 A;  4AQY H;  1IBK H;  2ZM6 H;  1N32 H;  4OD6 A;  1X4N A;  4DUY H;  1Z2I A;  3KDG A;  4DR2 H;  1UG8 A;  2E5L H;  4JI6 H;  1HR0 H;  3UOE A;  4DUZ H;  2FMR A;  1MSZ A;  4DR3 H;  2ANR A;  4LF9 H;  4NXN H;  3AEV B;  1WTJ A;  1EC6 A;  5K36 G;  2BL5 A;  2E3U A;  1J5E H;  1HNZ H;  1XNQ H;  4G08 A;  5JEA G;  4LIJ A;  4DV3 H;  5BR8 H;  3OET A;  1F0X A;  2OPV A;  4NZT M;  3T1H H;  2JEB I;  1J4W A;  2PQU A;  4DV0 H;  2UUA H;  4JV5 H;  2UXC H;  2HH2 A;  4X64 H;  2FFM A;  4JVH A;  1NXU A;  1IBL H;  1FJG H;  4BA2 I;  1S20 A;  3J81 W;  1ODH A;  4PDB A;  5C0X G;  1K1G A;  2P2R A;  4LFB H;  1SEI A;  4DV4 H;  4WAN A;  3GKU A;  1V8C A;  4OCH A;  1V9N A;  2UUB H;  3J80 W;  2JZX A;  2LRR A;  5LMU H;  2QND A;  1ZZJ A;  4KHP H;  2ANN A;  4X62 H;  5IWA H;  1ZTG A;  2D9I A;  4JI1 H;  3OTO H;  5A2Q W;  2K1H A;  5LL6 b;  1I6U A;  1PQX A;  4OO1 G;  2VQF H;  2JVZ A;  2PY9 A;  3J7A K;  1S03 G;  4B3S H;  3GAB A;  4AIM A;  2M8W A;  4B3R H;  3NCV A;  2JE6 I;  2CWF A;  4DR1 H;  4OX9 H;  2CTF A;  2AXY A;  1XNR H;  2VQE H;  2JEA I;  2PT7 G;  1X4M A;  1X9Z A;  1VIG A;  2UXB H;  4DV5 H;  1X0A A;  4GKK H;  4DR4 H;  4DR6 H;  4JYA H;  4LF6 H;  3I0P A;  4B3T H;  4NXM H;  1HNW H;  5FLX W;  4LF7 H;  4QMF B;  4K0K H;  2BA0 A;  3OSS D;  1XMO H;  4JI3 H;  2HHH H;  1VBI A;  3V69 A;  3VKE A;  4AM3 A;  1WHR A;  4H8A A;  4JI0 H;  2LF0 A;  2NN6 G;  2FPH X;  4FJU A;  2Z0S A;  1ZZK A;  4B8C D;  3T1Y H;  5DT9 A;  2A1S A;  2UU9 H;  3RF2 A;  5IT9 W;  1HNX H;  2DGR A;  1I94 H;  4YHH H;  4EC5 A;  2VKC A;  2CTM A;  2ZQE A;  1N36 H;  1WE8 A;  4JI8 H;  3EZJ A;  1FKA H;  1J5K A;  4FJS A;  4WAL A;  2CTL A;  2X06 A;  2Y3M A;  2CTK A;  1DTJ A;  1XRH A;  1DT4 A;  2CPM A;  3KDK A;  4NBQ A;  4YY3 H;  2CWH A;  2UUC H;  2CTE A;  4DR5 H;  4LFC H;  4JI7 H;  4LFA H;  4GKJ H;  3U1K A;  4JI5 H;  3QD7 X;  4NZR M; 
#chains in the Genus database with same CATH homology
 4X65 H;  4LF5 H;  1N33 H;  4B3M H;  4JI2 H;  4E9J A;  3SB1 A;  4DR7 H;  4X66 H;  2UXD H;  3FAU A;  1XMQ H;  4LF4 H;  1N34 H;  1IBM H;  2F4V H;  3GR5 A;  4LF8 H;  4DV6 H;  4DV1 H;  4DV7 H;  4DV2 H;  5LMN H;  4JI4 H;  1AN7 A;  2O4C A;  4AQY H;  1IBK H;  2ZM6 H;  1N32 H;  4OD6 A;  4DUY H;  4DR2 H;  3KDG A;  2E5L H;  4JI6 H;  1HR0 H;  4DUZ H;  4NXN H;  4DR3 H;  4LF9 H;  1HNZ H;  1J5E H;  1XNQ H;  4G08 A;  4DV3 H;  5BR8 H;  3OET A;  1F0X A;  3T1H H;  4NZT M;  4JV5 H;  4DV0 H;  2UUA H;  2UXC H;  4X64 H;  1IBL H;  1FJG H;  3J81 W;  1ODH A;  4PDB A;  4LFB H;  1SEI A;  4DV4 H;  4OCH A;  2UUB H;  3J80 W;  5LMU H;  4KHP H;  4X62 H;  5IWA H;  2D9I A;  4JI1 H;  3OTO H;  5A2Q W;  1I6U A;  5LL6 b;  2VQF H;  3J7A K;  1S03 G;  4B3S H;  3GAB A;  4B3R H;  3NCV A;  4DR1 H;  4OX9 H;  1XNR H;  2VQE H;  1X9Z A;  2PT7 G;  2UXB H;  4DV5 H;  4GKK H;  4DR4 H;  4DR6 H;  4JYA H;  4LF6 H;  4B3T H;  1HNW H;  4NXM H;  5FLX W;  4LF7 H;  3OSS D;  1XMO H;  4JI3 H;  2HHH H;  4JI0 H;  2LF0 A;  2FPH X;  3T1Y H;  4B8C D;  5DT9 A;  2UU9 H;  3RF2 A;  5IT9 W;  1HNX H;  1I94 H;  4YHH H;  4EC5 A;  2VKC A;  2ZQE A;  1N36 H;  4JI8 H;  3EZJ A;  1FKA H;  4NZR M;  4K0K H;  2Y3M A;  3KDK A;  4YY3 H;  4LFC H;  2UUC H;  4DR5 H;  4JI7 H;  4LFA H;  4GKJ H;  4JI5 H;  3QD7 X;  3JAM W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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