4B8TA

Rna binding protein solution structure of the third kh domain of ksrp in complex with the g-rich target sequence.
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
GAMAYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/rna
molecule keywords KH-TYPE SPLICING REGULATORY PROTEIN
publication title Noncanonical G Recognition Mediates Ksrp Regulation of Let-7 Biogenesis
pubmed doi rcsb
source organism Homo sapiens
total genus 21
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2012-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4b8tA00
1J4WA 1X4MA 2PY9A 1X4NA 4QMFB 5K36G 1EC6A 2HH3A 2JZXA 1VIGA 4AIMA 1DTJA 1TUAA 4AM3A 1DT4A 2CTLA 5JEAG 2PQUA 2NN6G 3L7ZC 3V69A 1WE8A 1VIHA 2CTMA 2DGRA 2JEBI 2OPUA 4BA2I 3VKEA 3AEVB 2E3UA 2Z0SA 4BA1I 2MJHA 4JVHA 4WANA 1ZTGA 2P2RA 4OO1G 2OPVA 2CPQA 2BL5A 4LIJA 4NBQA 1WVNA 2CTJA 2HH2A 3U1KA 1ZZJA 2ANRA 2CTKA 2BA0A 2QNDA 1K1GA 2ANNA 2FMRA 1ZZKA 2JVZA 2CTEA 2YQRA 2JEAI 4IFDG 4B8TA 1J5KA 1KHMA 2AXYA 2CTFA 2JE6I 4JVYA 1ZZIA 5C0XG 4WALA 2JA9A
chains in the Genus database with same CATH superfamily
2HHHH 2LTLA 1EC6A 4EC5A 4DV2H 4LFCH 1UG8A 4LFAH 1I6UA 3OSSD 4LF6H 5JEAG 2ZM6H 1I94H 4X66H 4JYAH 1S20A 4DR2H 1HNXH 1WE8A 4DV0H 1IBLH 4JI0H 1N32H 4BA1I 2VQEH 1VBIA 1IBMH 1ZTGA 4OO1G 4NBQA 2CWFA 2CTJA 2UUCH 4JI8H 2CTKA 1N36H 2CTEA 3I0PA 4DV5H 1XRHA 4DR1H 2LRRA 4X62H 1WTJA 1J5KA 1HR0H 1S03G 4DV3H 1ZZIA 4PDBA 4FJUA 3QD7X 2LF0A 1MSZA 4DV4H 1J4WA 4B3MH 4NZTM 2HH3A 4DV6H 1FJGH 4JI1H 4B3SH 4AQYH 4YY3H 4AM3A 1SEIA 4JI2H 2CTLA 2PQUA 2M6QA 5A2QW 3JAMW 1VIHA 4FJSA 1J5EH 2CTMA 4BA2I 2OPUA 2Y3MA 1V9NA 3GKUA 3VKEA 1FKAH 3AEVB 2E3UA 2Z0SA 2K1HA 4DV7H 2P2RA 1NXUA 2CPQA 4LIJA 5LMUH 2ANRA 2O4CA 2HH2A 2QNDA 3J80W 4JI6H 4H8AA 4DR5H 4JV5H 2LTMA 1Z2IA 1ZZKA 2JVZA 1F0XA 4GKKH 1KHMA 2AXYA 2UUAH 5BR8H 4B3TH 3J7AK 2CWHA 3KDKA 4B3RH 1X4MA 5DT9A 4LF5H 4B8CD 2VQFH 3T1HH 2FPHX 5K36G 2CPMA 4NXNH 1VIGA 1TUAA 1DTJA 1PQXA 4JI5H 1DT4A 3OETA 4DUYH 2NN6G 1IBKH 4GKJH 2PT7G 3V69A 3OTOH 1AN7A 5LL6b 2DGRA 4LF4H 1V8CA 4YHHH 2UXCH 4WANA 2G8YA 4G08A 4JI3H 4DR7H 3T1YH 2FFMA 1ODHA 1WVNA 3U1KA 4NXMH 5FLXW 4DR6H 2BA0A 3KDGA 3FAUA 4X65H 1HNZH 2ANNA 5LMNH 2YQRA 2UXDH 2D9IA 4B8TA 2CTFA 2JE6I 3EZJA 3GABA 2UUBH 1HNWH 4JVYA 4WALA 4LFBH 2M8WA 2PY9A 1X4NA 4QMFB 4OX9H 2UXBH 2JZXA 3NCVA 4OD6A 4AIMA 2VKCA 1N34H 2F4VH 1XNQH 4JI7H 5IWAH 3SB1A 2UU9H 1X0AA 2ZQEA 4LF7H 3L7ZC 1XMQH 2X06A 4DR3H 4IFDG 5IT9W 4E9JA 2JEBI 4DV1H 2E5LH 4KHPH 4OCHA 4JVHA 2MJHA 4DR4H 2OPVA 2BL5A 3UOEA 1ZZJA 1N33H 4NZRM 1XMOH 3RF2A 4JI4H 4X64H 1K1GA 4LF8H 4DUZH 4K0KH 2A1SA 1XNRH 2FMRA 1X9ZA 4LF9H 3J81W 5C0XG 1WHRA 2JEAI 2JA9A 3GR5A
chains in the Genus database with same CATH topology
1J4WA 1X4MA 2PY9A 1X4NA 4QMFB 5K36G 1EC6A 2HH3A 2JZXA 1VIGA 4AIMA 1DTJA 1TUAA 4AM3A 1DT4A 2CTLA 5JEAG 2PQUA 2NN6G 3L7ZC 3V69A 1WE8A 1VIHA 2CTMA 2DGRA 2JEBI 2OPUA 4BA2I 3VKEA 3AEVB 2E3UA 2Z0SA 4BA1I 2MJHA 4JVHA 4WANA 1ZTGA 2P2RA 4OO1G 2OPVA 2CPQA 2BL5A 4LIJA 4NBQA 1WVNA 2CTJA 2HH2A 3U1KA 1ZZJA 2ANRA 2CTKA 2BA0A 2QNDA 1K1GA 2ANNA 2FMRA 1ZZKA 2JVZA 2CTEA 2YQRA 2JEAI 4IFDG 4B8TA 1J5KA 1KHMA 2AXYA 2CTFA 2JE6I 4JVYA 1ZZIA 5C0XG 4WALA 2JA9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J4W A;  1X4M A;  2PY9 A;  1X4N A;  4QMF B;  5K36 G;  1EC6 A;  2HH3 A;  2JZX A;  1VIG A;  4AIM A;  1DTJ A;  1TUA A;  4AM3 A;  1DT4 A;  2CTL A;  5JEA G;  2PQU A;  2NN6 G;  3L7Z C;  3V69 A;  1WE8 A;  1VIH A;  2CTM A;  2DGR A;  2JEB I;  2OPU A;  4BA2 I;  3VKE A;  3AEV B;  2E3U A;  2Z0S A;  4BA1 I;  2MJH A;  4JVH A;  4WAN A;  1ZTG A;  2P2R A;  4OO1 G;  2OPV A;  2CPQ A;  2BL5 A;  4LIJ A;  4NBQ A;  1WVN A;  2CTJ A;  2HH2 A;  3U1K A;  1ZZJ A;  2ANR A;  2CTK A;  2BA0 A;  2QND A;  1K1G A;  2ANN A;  2FMR A;  1ZZK A;  2JVZ A;  2CTE A;  2YQR A;  2JEA I;  4IFD G;  4B8T A;  1J5K A;  1KHM A;  2AXY A;  2CTF A;  2JE6 I;  4JVY A;  1ZZI A;  5C0X G;  4WAL A;  2JA9 A; 
#chains in the Genus database with same CATH topology
 2HHH H;  2LTL A;  1EC6 A;  4EC5 A;  4DV2 H;  4LFC H;  1UG8 A;  4LFA H;  1I6U A;  3OSS D;  4LF6 H;  5JEA G;  2ZM6 H;  1I94 H;  4X66 H;  4JYA H;  1S20 A;  4DR2 H;  1HNX H;  1WE8 A;  4DV0 H;  1IBL H;  4JI0 H;  1N32 H;  4BA1 I;  2VQE H;  1VBI A;  1IBM H;  1ZTG A;  4OO1 G;  4NBQ A;  2CWF A;  2CTJ A;  2UUC H;  4JI8 H;  2CTK A;  1N36 H;  2CTE A;  3I0P A;  4DV5 H;  1XRH A;  4DR1 H;  2LRR A;  4X62 H;  1WTJ A;  1J5K A;  1HR0 H;  1S03 G;  4DV3 H;  1ZZI A;  4PDB A;  4FJU A;  3QD7 X;  2LF0 A;  1MSZ A;  4DV4 H;  1J4W A;  4B3M H;  4NZT M;  2HH3 A;  4DV6 H;  1FJG H;  4JI1 H;  4B3S H;  4AQY H;  4YY3 H;  4AM3 A;  1SEI A;  4JI2 H;  2CTL A;  2PQU A;  2M6Q A;  5A2Q W;  3JAM W;  1VIH A;  4FJS A;  1J5E H;  2CTM A;  4BA2 I;  2OPU A;  2Y3M A;  1V9N A;  3GKU A;  3VKE A;  1FKA H;  3AEV B;  2E3U A;  2Z0S A;  2K1H A;  4DV7 H;  2P2R A;  1NXU A;  2CPQ A;  4LIJ A;  5LMU H;  2ANR A;  2O4C A;  2HH2 A;  2QND A;  3J80 W;  4JI6 H;  4H8A A;  4DR5 H;  4JV5 H;  2LTM A;  1Z2I A;  1ZZK A;  2JVZ A;  1F0X A;  4GKK H;  1KHM A;  2AXY A;  2UUA H;  5BR8 H;  4B3T H;  3J7A K;  2CWH A;  3KDK A;  4B3R H;  1X4M A;  5DT9 A;  4LF5 H;  4B8C D;  2VQF H;  3T1H H;  2FPH X;  5K36 G;  2CPM A;  4NXN H;  1VIG A;  1TUA A;  1DTJ A;  1PQX A;  4JI5 H;  1DT4 A;  3OET A;  4DUY H;  2NN6 G;  1IBK H;  4GKJ H;  2PT7 G;  3V69 A;  3OTO H;  1AN7 A;  5LL6 b;  2DGR A;  4LF4 H;  1V8C A;  4YHH H;  2UXC H;  4WAN A;  2G8Y A;  4G08 A;  4JI3 H;  4DR7 H;  3T1Y H;  2FFM A;  1ODH A;  1WVN A;  3U1K A;  4NXM H;  5FLX W;  4DR6 H;  2BA0 A;  3KDG A;  3FAU A;  4X65 H;  1HNZ H;  2ANN A;  5LMN H;  2YQR A;  2UXD H;  2D9I A;  4B8T A;  2CTF A;  2JE6 I;  3EZJ A;  3GAB A;  2UUB H;  1HNW H;  4JVY A;  4WAL A;  4LFB H;  2M8W A;  2PY9 A;  1X4N A;  4QMF B;  4OX9 H;  2UXB H;  2JZX A;  3NCV A;  4OD6 A;  4AIM A;  2VKC A;  1N34 H;  2F4V H;  1XNQ H;  4JI7 H;  5IWA H;  3SB1 A;  2UU9 H;  1X0A A;  2ZQE A;  4LF7 H;  3L7Z C;  1XMQ H;  2X06 A;  4DR3 H;  4IFD G;  5IT9 W;  4E9J A;  2JEB I;  4DV1 H;  2E5L H;  4KHP H;  4OCH A;  4JVH A;  2MJH A;  4DR4 H;  2OPV A;  2BL5 A;  3UOE A;  1ZZJ A;  1N33 H;  4NZR M;  1XMO H;  3RF2 A;  4JI4 H;  4X64 H;  1K1G A;  4LF8 H;  4DUZ H;  4K0K H;  2A1S A;  1XNR H;  2FMR A;  1X9Z A;  4LF9 H;  3J81 W;  5C0X G;  1WHR A;  2JEA I;  2JA9 A;  3GR5 A; 
#chains in the Genus database with same CATH homology
 1J4W A;  1X4M A;  2PY9 A;  1X4N A;  4QMF B;  5K36 G;  1EC6 A;  2HH3 A;  2JZX A;  1VIG A;  4AIM A;  1DTJ A;  1TUA A;  4AM3 A;  1DT4 A;  2CTL A;  5JEA G;  2PQU A;  2NN6 G;  3L7Z C;  3V69 A;  1WE8 A;  1VIH A;  2CTM A;  2DGR A;  2JEB I;  2OPU A;  4BA2 I;  3VKE A;  3AEV B;  2E3U A;  2Z0S A;  4BA1 I;  2MJH A;  4JVH A;  4WAN A;  1ZTG A;  2P2R A;  4OO1 G;  2OPV A;  2CPQ A;  2BL5 A;  4LIJ A;  4NBQ A;  1WVN A;  2CTJ A;  2HH2 A;  3U1K A;  1ZZJ A;  2ANR A;  2CTK A;  2BA0 A;  2QND A;  1K1G A;  2ANN A;  2FMR A;  1ZZK A;  2JVZ A;  2CTE A;  2YQR A;  2JEA I;  4IFD G;  4B8T A;  1J5K A;  1KHM A;  2AXY A;  2CTF A;  2JE6 I;  4JVY A;  1ZZI A;  5C0X G;  4WAL A;  2JA9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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