4B8TA

Rna binding protein solution structure of the third kh domain of ksrp in complex with the g-rich target sequence.
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
GAMAYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/rna
molecule keywords KH-TYPE SPLICING REGULATORY PROTEIN
publication title Noncanonical G Recognition Mediates Ksrp Regulation of Let-7 Biogenesis
pubmed doi rcsb
source organism Homo sapiens
total genus 21
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2012-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4b8tA00
1ZTGA 1ZZKA 2NN6G 2PQUA 2BL5A 4JVYA 2BA0A 2CTMA 2HH3A 2FMRA 2QNDA 4B8TA 3V69A 2OPUA 2E3UA 2CTFA 1ZZJA 4WANA 3AEVB 1WE8A 2CTLA 1J5KA 2JEBI 5JEAG 2PY9A 4IFDG 1VIHA 4BA2I 2CPQA 4AIMA 1TUAA 2JEAI 1X4NA 2YQRA 1K1GA 2OPVA 4LIJA 4WALA 2CTJA 1WVNA 4JVHA 2HH2A 2ANNA 4QMFB 1KHMA 4BA1I 2MJHA 2Z0SA 2CTEA 2JVZA 2AXYA 1EC6A 2DGRA 4NBQA 3VKEA 1DT4A 2JE6I 1J4WA 4AM3A 1VIGA 2JA9A 3L7ZC 2JZXA 5K36G 1X4MA 1ZZIA 3U1KA 1DTJA 2CTKA 5C0XG 4OO1G 2P2RA 2ANRA
chains in the Genus database with same CATH superfamily
2NN6G 3UOEA 1X9ZA 2HH3A 4FJSA 2FMRA 3RF2A 3V69A 4DV6H 2UUAH 4DV0H 1WE8A 3GKUA 2CTLA 2M6QA 2PT7G 2JEBI 2LTLA 5JEAG 1IBLH 2Y3MA 1TUAA 3OETA 2FFMA 1IBKH 4B3RH 4QMFB 4JI5H 2MJHA 4DV7H 2CTEA 1EC6A 1AN7A 4G08A 3J80W 1DT4A 1HNWH 1S03G 4JI8H 3QD7X 1DTJA 4OCHA 1J5EH 2ANRA 1ZZKA 3JAMW 5IT9W 4JVYA 2A1SA 4KHPH 2CTMA 4AQYH 2UUCH 2UXBH 4B8TA 1IBMH 4JI6H 2E3UA 3KDKA 4NZRM 2ZQEA 1ZZJA 1XNRH 3AEVB 4X62H 4WANA 2LTMA 4DV1H 4B8CD 4NZTM 1VIHA 4DR1H 1XMOH 2OPVA 4WALA 2F4VH 4NXMH 3KDGA 3T1HH 2CWFA 4JVHA 2ANNA 1V8CA 1WTJA 1KHMA 2VQFH 4BA1I 3GABA 1SEIA 1WHRA 2LRRA 2CWHA 4FJUA 1Z2IA 2DGRA 5LL6b 2CPMA 2JA9A 4E9JA 3OTOH 5K36G 5LMUH 4OD6A 4LF8H 1I6UA 1N33H 5C0XG 4LF9H 2E5LH 1VBIA 4X64H 2UXDH 1PQXA 1N32H 2BL5A 4YY3H 2BA0A 4OX9H 4DV5H 2QNDA 4X65H 3SB1A 2G8YA 2OPUA 2O4CA 2UU9H 4B3MH 4DR6H 2ZM6H 1MSZA 1J5KA 2PY9A 4IFDG 4BA2I 2CPQA 2JEAI 1X4NA 2YQRA 1XRHA 4K0KH 2CTJA 1WVNA 3I0PA 4NXNH 4DR5H 1XMQH 4JI4H 2HH2A 4DV3H 1V9NA 4JI1H 1FJGH 4LFBH 2K1HA 3VKEA 4DR4H 2JE6I 1J4WA 2UXCH 2X06A 3L7ZC 4DR2H 1ZZIA 4DV4H 5IWAH 4B3TH 4PDBA 4JI3H 4LF4H 3U1KA 4LF5H 3GR5A 3J81W 1HNZH 4LF7H 4GKJH 4OO1G 2P2RA 2UUBH 2VKCA 1ZTGA 4JI2H 2PQUA 1N36H 5A2QW 4DR3H 1FKAH 4X66H 3FAUA 3J7AK 5BR8H 1I94H 2M8WA 2CTFA 4DV2H 2D9IA 2VQEH 1ODHA 1X0AA 5FLXW 2LF0A 1XNQH 4JYAH 4DR7H 3EZJA 4JI7H 4EC5A 4AIMA 4DUZH 1UG8A 1K1GA 4LIJA 3T1YH 1HNXH 4B3SH 4H8AA 2HHHH 4LFCH 4GKKH 3NCVA 4JV5H 4JI0H 4YHHH 2Z0SA 2JVZA 2AXYA 4NBQA 1HR0H 4AM3A 1VIGA 2FPHX 2JZXA 1S20A 4DUYH 1X4MA 1N34H 4LFAH 3OSSD 5LMNH 2CTKA 4LF6H 5DT9A 1F0XA 1NXUA
chains in the Genus database with same CATH topology
1ZTGA 1ZZKA 2NN6G 2PQUA 2BL5A 4JVYA 2BA0A 2CTMA 2HH3A 2FMRA 2QNDA 4B8TA 3V69A 2OPUA 2E3UA 2CTFA 1ZZJA 4WANA 3AEVB 1WE8A 2CTLA 1J5KA 2JEBI 5JEAG 2PY9A 4IFDG 1VIHA 4BA2I 2CPQA 4AIMA 1TUAA 2JEAI 1X4NA 2YQRA 1K1GA 2OPVA 4LIJA 4WALA 2CTJA 1WVNA 4JVHA 2HH2A 2ANNA 4QMFB 1KHMA 4BA1I 2MJHA 2Z0SA 2CTEA 2JVZA 2AXYA 1EC6A 2DGRA 4NBQA 3VKEA 1DT4A 2JE6I 1J4WA 4AM3A 1VIGA 2JA9A 3L7ZC 2JZXA 5K36G 1X4MA 1ZZIA 3U1KA 1DTJA 2CTKA 5C0XG 4OO1G 2P2RA 2ANRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZTG A;  1ZZK A;  2NN6 G;  2PQU A;  2BL5 A;  4JVY A;  2BA0 A;  2CTM A;  2HH3 A;  2FMR A;  2QND A;  4B8T A;  3V69 A;  2OPU A;  2E3U A;  2CTF A;  1ZZJ A;  4WAN A;  3AEV B;  1WE8 A;  2CTL A;  1J5K A;  2JEB I;  5JEA G;  2PY9 A;  4IFD G;  1VIH A;  4BA2 I;  2CPQ A;  4AIM A;  1TUA A;  2JEA I;  1X4N A;  2YQR A;  1K1G A;  2OPV A;  4LIJ A;  4WAL A;  2CTJ A;  1WVN A;  4JVH A;  2HH2 A;  2ANN A;  4QMF B;  1KHM A;  4BA1 I;  2MJH A;  2Z0S A;  2CTE A;  2JVZ A;  2AXY A;  1EC6 A;  2DGR A;  4NBQ A;  3VKE A;  1DT4 A;  2JE6 I;  1J4W A;  4AM3 A;  1VIG A;  2JA9 A;  3L7Z C;  2JZX A;  5K36 G;  1X4M A;  1ZZI A;  3U1K A;  1DTJ A;  2CTK A;  5C0X G;  4OO1 G;  2P2R A;  2ANR A; 
#chains in the Genus database with same CATH topology
 2NN6 G;  3UOE A;  1X9Z A;  2HH3 A;  4FJS A;  2FMR A;  3RF2 A;  3V69 A;  4DV6 H;  2UUA H;  4DV0 H;  1WE8 A;  3GKU A;  2CTL A;  2M6Q A;  2PT7 G;  2JEB I;  2LTL A;  5JEA G;  1IBL H;  2Y3M A;  1TUA A;  3OET A;  2FFM A;  1IBK H;  4B3R H;  4QMF B;  4JI5 H;  2MJH A;  4DV7 H;  2CTE A;  1EC6 A;  1AN7 A;  4G08 A;  3J80 W;  1DT4 A;  1HNW H;  1S03 G;  4JI8 H;  3QD7 X;  1DTJ A;  4OCH A;  1J5E H;  2ANR A;  1ZZK A;  3JAM W;  5IT9 W;  4JVY A;  2A1S A;  4KHP H;  2CTM A;  4AQY H;  2UUC H;  2UXB H;  4B8T A;  1IBM H;  4JI6 H;  2E3U A;  3KDK A;  4NZR M;  2ZQE A;  1ZZJ A;  1XNR H;  3AEV B;  4X62 H;  4WAN A;  2LTM A;  4DV1 H;  4B8C D;  4NZT M;  1VIH A;  4DR1 H;  1XMO H;  2OPV A;  4WAL A;  2F4V H;  4NXM H;  3KDG A;  3T1H H;  2CWF A;  4JVH A;  2ANN A;  1V8C A;  1WTJ A;  1KHM A;  2VQF H;  4BA1 I;  3GAB A;  1SEI A;  1WHR A;  2LRR A;  2CWH A;  4FJU A;  1Z2I A;  2DGR A;  5LL6 b;  2CPM A;  2JA9 A;  4E9J A;  3OTO H;  5K36 G;  5LMU H;  4OD6 A;  4LF8 H;  1I6U A;  1N33 H;  5C0X G;  4LF9 H;  2E5L H;  1VBI A;  4X64 H;  2UXD H;  1PQX A;  1N32 H;  2BL5 A;  4YY3 H;  2BA0 A;  4OX9 H;  4DV5 H;  2QND A;  4X65 H;  3SB1 A;  2G8Y A;  2OPU A;  2O4C A;  2UU9 H;  4B3M H;  4DR6 H;  2ZM6 H;  1MSZ A;  1J5K A;  2PY9 A;  4IFD G;  4BA2 I;  2CPQ A;  2JEA I;  1X4N A;  2YQR A;  1XRH A;  4K0K H;  2CTJ A;  1WVN A;  3I0P A;  4NXN H;  4DR5 H;  1XMQ H;  4JI4 H;  2HH2 A;  4DV3 H;  1V9N A;  4JI1 H;  1FJG H;  4LFB H;  2K1H A;  3VKE A;  4DR4 H;  2JE6 I;  1J4W A;  2UXC H;  2X06 A;  3L7Z C;  4DR2 H;  1ZZI A;  4DV4 H;  5IWA H;  4B3T H;  4PDB A;  4JI3 H;  4LF4 H;  3U1K A;  4LF5 H;  3GR5 A;  3J81 W;  1HNZ H;  4LF7 H;  4GKJ H;  4OO1 G;  2P2R A;  2UUB H;  2VKC A;  1ZTG A;  4JI2 H;  2PQU A;  1N36 H;  5A2Q W;  4DR3 H;  1FKA H;  4X66 H;  3FAU A;  3J7A K;  5BR8 H;  1I94 H;  2M8W A;  2CTF A;  4DV2 H;  2D9I A;  2VQE H;  1ODH A;  1X0A A;  5FLX W;  2LF0 A;  1XNQ H;  4JYA H;  4DR7 H;  3EZJ A;  4JI7 H;  4EC5 A;  4AIM A;  4DUZ H;  1UG8 A;  1K1G A;  4LIJ A;  3T1Y H;  1HNX H;  4B3S H;  4H8A A;  2HHH H;  4LFC H;  4GKK H;  3NCV A;  4JV5 H;  4JI0 H;  4YHH H;  2Z0S A;  2JVZ A;  2AXY A;  4NBQ A;  1HR0 H;  4AM3 A;  1VIG A;  2FPH X;  2JZX A;  1S20 A;  4DUY H;  1X4M A;  1N34 H;  4LFA H;  3OSS D;  5LMN H;  2CTK A;  4LF6 H;  5DT9 A;  1F0X A;  1NXU A; 
#chains in the Genus database with same CATH homology
 1ZTG A;  1ZZK A;  2NN6 G;  2PQU A;  2BL5 A;  4JVY A;  2BA0 A;  2CTM A;  2HH3 A;  2FMR A;  2QND A;  4B8T A;  3V69 A;  2OPU A;  2E3U A;  2CTF A;  1ZZJ A;  4WAN A;  3AEV B;  1WE8 A;  2CTL A;  1J5K A;  2JEB I;  5JEA G;  2PY9 A;  4IFD G;  1VIH A;  4BA2 I;  2CPQ A;  4AIM A;  1TUA A;  2JEA I;  1X4N A;  2YQR A;  1K1G A;  2OPV A;  4LIJ A;  4WAL A;  2CTJ A;  1WVN A;  4JVH A;  2HH2 A;  2ANN A;  4QMF B;  1KHM A;  4BA1 I;  2MJH A;  2Z0S A;  2CTE A;  2JVZ A;  2AXY A;  1EC6 A;  2DGR A;  4NBQ A;  3VKE A;  1DT4 A;  2JE6 I;  1J4W A;  4AM3 A;  1VIG A;  2JA9 A;  3L7Z C;  2JZX A;  5K36 G;  1X4M A;  1ZZI A;  3U1K A;  1DTJ A;  2CTK A;  5C0X G;  4OO1 G;  2P2R A;  2ANR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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