4QMFB

Structure of the krr1 and faf1 complex from saccharomyces cerevisiae
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
175
structure length
175
Chain Sequence
ESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKNIHPIYHIKELMIKRELAKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords KRR1 small subunit processome component
publication title Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 55
structure length 175
sequence length 175
chains with identical sequence D
ec nomenclature
pdb deposition date 2014-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF17903 KH_8 Krr1 KH1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4qmfB01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4qmfB02
2JE6I 1TUAA 2CTMA 2JVZA 2YQRA 2HH2A 1KHMA 2OPVA 4WALA 1ZZJA 2E3UA 2PQUA 2JEAI 2HH3A 2JA9A 2FMRA 2NN6G 3L7ZC 2CPQA 2DGRA 4LIJA 3VKEA 3AEVB 4JVHA 2CTKA 4WANA 4AM3A 1X4MA 1ZZIA 4QMFB 2CTLA 4OO1G 3V69A 5C0XG 2MJHA 2JZXA 1VIGA 1J5KA 4JVYA 2BL5A 4B8TA 2ANRA 4BA1I 2JEBI 2QNDA 1K1GA 2CTEA 4NBQA 1EC6A 1WE8A 2ANNA 1ZZKA 2AXYA 1DT4A 1WVNA 1ZTGA 2PY9A 5JEAG 5K36G 2OPUA 2BA0A 2Z0SA 2CTFA 3U1KA 2CTJA 4BA2I 1X4NA 1J4WA 2P2RA 4IFDG 1VIHA 4AIMA 1DTJA
chains in the Genus database with same CATH superfamily
1N34H 4B3MH 4DV3H 1KHMA 4WALA 1J5EH 2E3UA 1AN7A 3NCVA 1IBMH 4PDBA 4JI1H 2PT7G 4YHHH 4B8CD 4LIJA 2DGRA 2D9IA 3AEVB 4JVHA 4DR1H 3OSSD 2LF0A 3J80W 3T1HH 3FAUA 2G8YA 2CWFA 2X06A 1F0XA 1HNWH 5C0XG 1J5KA 4K0KH 3T1YH 2BL5A 3SB1A 2O4CA 2VKCA 1Z2IA 2VQEH 1FKAH 2UUBH 2CTEA 2VQFH 4JI4H 2ANNA 4AQYH 3QD7X 2UU9H 4FJSA 4OCHA 1DT4A 1WVNA 2PY9A 1S20A 4KHPH 1WTJA 2BA0A 3GR5A 4DV2H 2CTJA 4GKKH 1X4NA 3I0PA 1X9ZA 1J4WA 1XMOH 1DTJA 2YQRA 4DUZH 3J81W 5IT9W 2JEAI 4H8AA 2HH3A 2NN6G 2FMRA 3L7ZC 4DUYH 2UUAH 4NXNH 4B3TH 2CPQA 2LTLA 4YY3H 4NZTM 1N36H 1HR0H 4LF4H 4GKJH 2UXBH 4WANA 4JI0H 4JI3H 4LF8H 4DV6H 2F4VH 3KDGA 3UOEA 5A2QW 4JI2H 1VIGA 4LF5H 5LMUH 2E5LH 4DV7H 2ANRA 4OX9H 2UXDH 4DR6H 1IBLH 2HHHH 1MSZA 1PQXA 4NZRM 5LMNH 1WHRA 2M8WA 5LL6b 3OETA 5DT9A 4DR3H 4LF7H 3GKUA 4JI7H 4NXMH 4X62H 1VIHA 1ZZIA 1K1GA 1TUAA 2JVZA 2HH2A 4X64H 4DV4H 2PQUA 2M6QA 4LF6H 2JA9A 4AIMA 4X65H 1VBIA 4JI5H 4JI8H 3VKEA 1HNXH 2A1SA 1S03G 2ZQEA 2LTMA 1ODHA 4LFAH 3EZJA 4LFCH 4G08A 1XMQH 4AM3A 1X4MA 2ZM6H 2CTLA 2FPHX 1N33H 4EC5A 3V69A 4X66H 4DV1H 4JVYA 1HNZH 4B8TA 4FJUA 4BA1I 4DR2H 2K1HA 4DR5H 1EC6A 3JAMW 1N32H 4DR7H 4DR4H 2AXYA 5K36G 1X0AA 2Y3MA 3KDKA 4LF9H 2FFMA 1I94H 1NXUA 4IFDG 4LFBH 5JEAG 2JE6I 2CTMA 4B3RH 1UG8A 2OPVA 1ZZJA 1I6UA 4DV0H 2CPMA 5BR8H 4B3SH 1V8CA 3J7AK 1FJGH 2CTKA 5IWAH 4OD6A 4JV5H 4QMFB 4JYAH 4OO1G 1SEIA 4DV5H 5FLXW 2MJHA 2JZXA 3RF2A 1IBKH 3GABA 2JEBI 2QNDA 4NBQA 1WE8A 1V9NA 1ZZKA 3OTOH 1XNQH 4E9JA 1ZTGA 2UXCH 2LRRA 2OPUA 4JI6H 1XNRH 1XRHA 2Z0SA 2CTFA 3U1KA 2UUCH 4BA2I 2P2RA 2CWHA
chains in the Genus database with same CATH topology
2JE6I 1TUAA 2CTMA 2JVZA 2YQRA 2HH2A 1KHMA 2OPVA 4WALA 1ZZJA 2E3UA 2PQUA 2JEAI 2HH3A 2JA9A 2FMRA 2NN6G 3L7ZC 2CPQA 2DGRA 4LIJA 3VKEA 3AEVB 4JVHA 2CTKA 4WANA 4AM3A 1X4MA 1ZZIA 4QMFB 2CTLA 4OO1G 3V69A 5C0XG 2MJHA 2JZXA 1VIGA 1J5KA 4JVYA 2BL5A 4B8TA 2ANRA 4BA1I 2JEBI 2QNDA 1K1GA 2CTEA 4NBQA 1EC6A 1WE8A 2ANNA 1ZZKA 2AXYA 1DT4A 1WVNA 1ZTGA 2PY9A 5JEAG 5K36G 2OPUA 2BA0A 2Z0SA 2CTFA 3U1KA 2CTJA 4BA2I 1X4NA 1J4WA 2P2RA 4IFDG 1VIHA 4AIMA 1DTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JE6 I;  1TUA A;  2CTM A;  2JVZ A;  2YQR A;  2HH2 A;  1KHM A;  2OPV A;  4WAL A;  1ZZJ A;  2E3U A;  2PQU A;  2JEA I;  2HH3 A;  2JA9 A;  2FMR A;  2NN6 G;  3L7Z C;  2CPQ A;  2DGR A;  4LIJ A;  3VKE A;  3AEV B;  4JVH A;  2CTK A;  4WAN A;  4AM3 A;  1X4M A;  1ZZI A;  4QMF B;  2CTL A;  4OO1 G;  3V69 A;  5C0X G;  2MJH A;  2JZX A;  1VIG A;  1J5K A;  4JVY A;  2BL5 A;  4B8T A;  2ANR A;  4BA1 I;  2JEB I;  2QND A;  1K1G A;  2CTE A;  4NBQ A;  1EC6 A;  1WE8 A;  2ANN A;  1ZZK A;  2AXY A;  1DT4 A;  1WVN A;  1ZTG A;  2PY9 A;  5JEA G;  5K36 G;  2OPU A;  2BA0 A;  2Z0S A;  2CTF A;  3U1K A;  2CTJ A;  4BA2 I;  1X4N A;  1J4W A;  2P2R A;  4IFD G;  1VIH A;  4AIM A;  1DTJ A; 
#chains in the Genus database with same CATH topology
 1N34 H;  4B3M H;  4DV3 H;  1KHM A;  4WAL A;  1J5E H;  2E3U A;  1AN7 A;  3NCV A;  1IBM H;  4PDB A;  4JI1 H;  2PT7 G;  4YHH H;  4B8C D;  4LIJ A;  2DGR A;  2D9I A;  3AEV B;  4JVH A;  4DR1 H;  3OSS D;  2LF0 A;  3J80 W;  3T1H H;  3FAU A;  2G8Y A;  2CWF A;  2X06 A;  1F0X A;  1HNW H;  5C0X G;  1J5K A;  4K0K H;  3T1Y H;  2BL5 A;  3SB1 A;  2O4C A;  2VKC A;  1Z2I A;  2VQE H;  1FKA H;  2UUB H;  2CTE A;  2VQF H;  4JI4 H;  2ANN A;  4AQY H;  3QD7 X;  2UU9 H;  4FJS A;  4OCH A;  1DT4 A;  1WVN A;  2PY9 A;  1S20 A;  4KHP H;  1WTJ A;  2BA0 A;  3GR5 A;  4DV2 H;  2CTJ A;  4GKK H;  1X4N A;  3I0P A;  1X9Z A;  1J4W A;  1XMO H;  1DTJ A;  2YQR A;  4DUZ H;  3J81 W;  5IT9 W;  2JEA I;  4H8A A;  2HH3 A;  2NN6 G;  2FMR A;  3L7Z C;  4DUY H;  2UUA H;  4NXN H;  4B3T H;  2CPQ A;  2LTL A;  4YY3 H;  4NZT M;  1N36 H;  1HR0 H;  4LF4 H;  4GKJ H;  2UXB H;  4WAN A;  4JI0 H;  4JI3 H;  4LF8 H;  4DV6 H;  2F4V H;  3KDG A;  3UOE A;  5A2Q W;  4JI2 H;  1VIG A;  4LF5 H;  5LMU H;  2E5L H;  4DV7 H;  2ANR A;  4OX9 H;  2UXD H;  4DR6 H;  1IBL H;  2HHH H;  1MSZ A;  1PQX A;  4NZR M;  5LMN H;  1WHR A;  2M8W A;  5LL6 b;  3OET A;  5DT9 A;  4DR3 H;  4LF7 H;  3GKU A;  4JI7 H;  4NXM H;  4X62 H;  1VIH A;  1ZZI A;  1K1G A;  1TUA A;  2JVZ A;  2HH2 A;  4X64 H;  4DV4 H;  2PQU A;  2M6Q A;  4LF6 H;  2JA9 A;  4AIM A;  4X65 H;  1VBI A;  4JI5 H;  4JI8 H;  3VKE A;  1HNX H;  2A1S A;  1S03 G;  2ZQE A;  2LTM A;  1ODH A;  4LFA H;  3EZJ A;  4LFC H;  4G08 A;  1XMQ H;  4AM3 A;  1X4M A;  2ZM6 H;  2CTL A;  2FPH X;  1N33 H;  4EC5 A;  3V69 A;  4X66 H;  4DV1 H;  4JVY A;  1HNZ H;  4B8T A;  4FJU A;  4BA1 I;  4DR2 H;  2K1H A;  4DR5 H;  1EC6 A;  3JAM W;  1N32 H;  4DR7 H;  4DR4 H;  2AXY A;  5K36 G;  1X0A A;  2Y3M A;  3KDK A;  4LF9 H;  2FFM A;  1I94 H;  1NXU A;  4IFD G;  4LFB H;  5JEA G;  2JE6 I;  2CTM A;  4B3R H;  1UG8 A;  2OPV A;  1ZZJ A;  1I6U A;  4DV0 H;  2CPM A;  5BR8 H;  4B3S H;  1V8C A;  3J7A K;  1FJG H;  2CTK A;  5IWA H;  4OD6 A;  4JV5 H;  4QMF B;  4JYA H;  4OO1 G;  1SEI A;  4DV5 H;  5FLX W;  2MJH A;  2JZX A;  3RF2 A;  1IBK H;  3GAB A;  2JEB I;  2QND A;  4NBQ A;  1WE8 A;  1V9N A;  1ZZK A;  3OTO H;  1XNQ H;  4E9J A;  1ZTG A;  2UXC H;  2LRR A;  2OPU A;  4JI6 H;  1XNR H;  1XRH A;  2Z0S A;  2CTF A;  3U1K A;  2UUC H;  4BA2 I;  2P2R A;  2CWH A; 
#chains in the Genus database with same CATH homology
 2JE6 I;  1TUA A;  2CTM A;  2JVZ A;  2YQR A;  2HH2 A;  1KHM A;  2OPV A;  4WAL A;  1ZZJ A;  2E3U A;  2PQU A;  2JEA I;  2HH3 A;  2JA9 A;  2FMR A;  2NN6 G;  3L7Z C;  2CPQ A;  2DGR A;  4LIJ A;  3VKE A;  3AEV B;  4JVH A;  2CTK A;  4WAN A;  4AM3 A;  1X4M A;  1ZZI A;  4QMF B;  2CTL A;  4OO1 G;  3V69 A;  5C0X G;  2MJH A;  2JZX A;  1VIG A;  1J5K A;  4JVY A;  2BL5 A;  4B8T A;  2ANR A;  4BA1 I;  2JEB I;  2QND A;  1K1G A;  2CTE A;  4NBQ A;  1EC6 A;  1WE8 A;  2ANN A;  1ZZK A;  2AXY A;  1DT4 A;  1WVN A;  1ZTG A;  2PY9 A;  5JEA G;  5K36 G;  2OPU A;  2BA0 A;  2Z0S A;  2CTF A;  3U1K A;  2CTJ A;  4BA2 I;  1X4N A;  1J4W A;  2P2R A;  4IFD G;  1VIH A;  4AIM A;  1DTJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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