4QMFB

Structure of the krr1 and faf1 complex from saccharomyces cerevisiae
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
175
structure length
175
Chain Sequence
ESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKNIHPIYHIKELMIKRELAKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast
pubmed doi rcsb
molecule tags Rna binding protein
source organism Saccharomyces cerevisiae
molecule keywords KRR1 small subunit processome component
total genus 55
structure length 175
sequence length 175
chains with identical sequence D
ec nomenclature
pdb deposition date 2014-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF17903 KH_8 Krr1 KH1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4qmfB01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4qmfB02
3AEVB 2CPQA 2CTKA 2ANRA 2MJHA 3U1KA 4JVYA 4B8TA 2Z0SA 5K36G 2QNDA 1VIGA 1ZZKA 3VKEA 1K1GA 2FMRA 4OO1G 2DGRA 2CTLA 2OPVA 2JEBI 2YQRA 1DT4A 1X4MA 2CTMA 5JEAG 1KHMA 2JEAI 4LIJA 2ANNA 2PQUA 4NBQA 5C0XG 2AXYA 1EC6A 1DTJA 4WANA 1X4NA 4AM3A 2JA9A 1ZZJA 2CTJA 2HH2A 2CTFA 3V69A 2P2RA 4AIMA 2HH3A 1WE8A 4WALA 2JVZA 1ZTGA 3L7ZC 2PY9A 4QMFB 2CTEA 1J5KA 2NN6G 4IFDG 2BA0A 1ZZIA 4JVHA 1TUAA 1J4WA 2E3UA 2JZXA 2BL5A 2JE6I 1WVNA 2OPUA 4BA2I 4BA1I 1VIHA
chains in the Genus database with same CATH superfamily
3KDKA 4JI3H 2CTKA 4YY3H 4B3RH 4JVYA 3J7AK 2QNDA 1VIGA 1ZZKA 1XRHA 1IBMH 2FMRA 2F4VH 3EZJA 4JI2H 4GKKH 2CTLA 4OO1G 2JEBI 1I94H 3OETA 2UUAH 1X4MA 4KHPH 2O4CA 4EC5A 2D9IA 2VKCA 4X65H 4AQYH 3T1HH 2JEAI 2PQUA 2AXYA 3UOEA 1X4NA 1X0AA 1WE8A 2JVZA 4DUZH 2CPMA 4DR2H 1VBIA 5FLXW 2FFMA 2VQEH 1ZZIA 1F0XA 2M6QA 2JZXA 5DT9A 4JI4H 5A2QW 3OTOH 4E9JA 3VKEA 2G8YA 1UG8A 4PDBA 4DR4H 4H8AA 2MJHA 3KDGA 2M8WA 4LF5H 2ZM6H 4JI6H 1V8CA 1HNZH 2PT7G 4DV4H 4JI1H 3I0PA 2UXCH 4G08A 4OX9H 4DV7H 1S03G 2ANNA 4JV5H 5C0XG 2FPHX 3J81W 1EC6A 1DTJA 5BR8H 4LF7H 4WANA 4B3SH 1ODHA 4AM3A 1SEIA 1Z2IA 2CTFA 2X06A 3NCVA 4DR1H 1N36H 2K1HA 3JAMW 1IBKH 3FAUA 1ZTGA 4LF4H 1N33H 3L7ZC 5LL6b 4FJUA 1NXUA 4LF8H 2LF0A 1N34H 2BA0A 4IFDG 4JVHA 1TUAA 2UUBH 2HHHH 1HNWH 2OPUA 1XMQH 2CWFA 1XNQH 2CPQA 2A1SA 4B8CD 4JI5H 3U1KA 1S20A 5K36G 1X9ZA 4JI0H 2VQFH 2DGRA 1HNXH 3OSSD 1V9NA 4DV1H 2UXDH 1DT4A 4DR6H 3QD7X 4DV5H 2UU9H 1KHMA 4NBQA 4LF6H 1FJGH 4OCHA 1WTJA 1I6UA 1ZZJA 1PQXA 3V69A 4DUYH 4DV6H 4AIMA 2HH3A 1IBLH 2CWHA 2PY9A 4QMFB 2CTEA 1J5KA 1MSZA 1FKAH 4LFAH 2UUCH 4LF9H 4X66H 1J4WA 5IT9W 2E3UA 4DR3H 1WVNA 4BA2I 4BA1I 2UXBH 2JE6I 1VIHA 4NXMH 4GKJH 3GABA 2LTLA 2LRRA 5LMNH 3AEVB 4LFBH 3SB1A 2ANRA 3RF2A 3T1YH 4B8TA 2Z0SA 5IWAH 1XMOH 4DR5H 4NXNH 1J5EH 1N32H 1K1GA 4FJSA 2E5LH 2OPVA 4JYAH 2YQRA 1WHRA 4DV3H 4OD6A 2CTMA 5JEAG 4JI7H 4X62H 4DR7H 2ZQEA 4K0KH 4LIJA 4B3MH 4B3TH 2JA9A 2CTJA 2HH2A 5LMUH 1HR0H 4LFCH 1AN7A 3GKUA 4WALA 4YHHH 4DV2H 1XNRH 2NN6G 2Y3MA 4NZRM 4NZTM 4X64H 4JI8H 2BL5A 2P2RA 4DV0H 3GR5A 3J80W 2LTMA
chains in the Genus database with same CATH topology
3AEVB 2CPQA 2CTKA 2ANRA 2MJHA 3U1KA 4JVYA 4B8TA 2Z0SA 5K36G 2QNDA 1VIGA 1ZZKA 3VKEA 1K1GA 2FMRA 4OO1G 2DGRA 2CTLA 2OPVA 2JEBI 2YQRA 1DT4A 1X4MA 2CTMA 5JEAG 1KHMA 2JEAI 4LIJA 2ANNA 2PQUA 4NBQA 5C0XG 2AXYA 1EC6A 1DTJA 4WANA 1X4NA 4AM3A 2JA9A 1ZZJA 2CTJA 2HH2A 2CTFA 3V69A 2P2RA 4AIMA 2HH3A 1WE8A 4WALA 2JVZA 1ZTGA 3L7ZC 2PY9A 4QMFB 2CTEA 1J5KA 2NN6G 4IFDG 2BA0A 1ZZIA 4JVHA 1TUAA 1J4WA 2E3UA 2JZXA 2BL5A 2JE6I 1WVNA 2OPUA 4BA2I 4BA1I 1VIHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AEV B;  2CPQ A;  2CTK A;  2ANR A;  2MJH A;  3U1K A;  4JVY A;  4B8T A;  2Z0S A;  5K36 G;  2QND A;  1VIG A;  1ZZK A;  3VKE A;  1K1G A;  2FMR A;  4OO1 G;  2DGR A;  2CTL A;  2OPV A;  2JEB I;  2YQR A;  1DT4 A;  1X4M A;  2CTM A;  5JEA G;  1KHM A;  2JEA I;  4LIJ A;  2ANN A;  2PQU A;  4NBQ A;  5C0X G;  2AXY A;  1EC6 A;  1DTJ A;  4WAN A;  1X4N A;  4AM3 A;  2JA9 A;  1ZZJ A;  2CTJ A;  2HH2 A;  2CTF A;  3V69 A;  2P2R A;  4AIM A;  2HH3 A;  1WE8 A;  4WAL A;  2JVZ A;  1ZTG A;  3L7Z C;  2PY9 A;  4QMF B;  2CTE A;  1J5K A;  2NN6 G;  4IFD G;  2BA0 A;  1ZZI A;  4JVH A;  1TUA A;  1J4W A;  2E3U A;  2JZX A;  2BL5 A;  2JE6 I;  1WVN A;  2OPU A;  4BA2 I;  4BA1 I;  1VIH A; 
#chains in the Genus database with same CATH topology
 3KDK A;  4JI3 H;  2CTK A;  4YY3 H;  4B3R H;  4JVY A;  3J7A K;  2QND A;  1VIG A;  1ZZK A;  1XRH A;  1IBM H;  2FMR A;  2F4V H;  3EZJ A;  4JI2 H;  4GKK H;  2CTL A;  4OO1 G;  2JEB I;  1I94 H;  3OET A;  2UUA H;  1X4M A;  4KHP H;  2O4C A;  4EC5 A;  2D9I A;  2VKC A;  4X65 H;  4AQY H;  3T1H H;  2JEA I;  2PQU A;  2AXY A;  3UOE A;  1X4N A;  1X0A A;  1WE8 A;  2JVZ A;  4DUZ H;  2CPM A;  4DR2 H;  1VBI A;  5FLX W;  2FFM A;  2VQE H;  1ZZI A;  1F0X A;  2M6Q A;  2JZX A;  5DT9 A;  4JI4 H;  5A2Q W;  3OTO H;  4E9J A;  3VKE A;  2G8Y A;  1UG8 A;  4PDB A;  4DR4 H;  4H8A A;  2MJH A;  3KDG A;  2M8W A;  4LF5 H;  2ZM6 H;  4JI6 H;  1V8C A;  1HNZ H;  2PT7 G;  4DV4 H;  4JI1 H;  3I0P A;  2UXC H;  4G08 A;  4OX9 H;  4DV7 H;  1S03 G;  2ANN A;  4JV5 H;  5C0X G;  2FPH X;  3J81 W;  1EC6 A;  1DTJ A;  5BR8 H;  4LF7 H;  4WAN A;  4B3S H;  1ODH A;  4AM3 A;  1SEI A;  1Z2I A;  2CTF A;  2X06 A;  3NCV A;  4DR1 H;  1N36 H;  2K1H A;  3JAM W;  1IBK H;  3FAU A;  1ZTG A;  4LF4 H;  1N33 H;  3L7Z C;  5LL6 b;  4FJU A;  1NXU A;  4LF8 H;  2LF0 A;  1N34 H;  2BA0 A;  4IFD G;  4JVH A;  1TUA A;  2UUB H;  2HHH H;  1HNW H;  2OPU A;  1XMQ H;  2CWF A;  1XNQ H;  2CPQ A;  2A1S A;  4B8C D;  4JI5 H;  3U1K A;  1S20 A;  5K36 G;  1X9Z A;  4JI0 H;  2VQF H;  2DGR A;  1HNX H;  3OSS D;  1V9N A;  4DV1 H;  2UXD H;  1DT4 A;  4DR6 H;  3QD7 X;  4DV5 H;  2UU9 H;  1KHM A;  4NBQ A;  4LF6 H;  1FJG H;  4OCH A;  1WTJ A;  1I6U A;  1ZZJ A;  1PQX A;  3V69 A;  4DUY H;  4DV6 H;  4AIM A;  2HH3 A;  1IBL H;  2CWH A;  2PY9 A;  4QMF B;  2CTE A;  1J5K A;  1MSZ A;  1FKA H;  4LFA H;  2UUC H;  4LF9 H;  4X66 H;  1J4W A;  5IT9 W;  2E3U A;  4DR3 H;  1WVN A;  4BA2 I;  4BA1 I;  2UXB H;  2JE6 I;  1VIH A;  4NXM H;  4GKJ H;  3GAB A;  2LTL A;  2LRR A;  5LMN H;  3AEV B;  4LFB H;  3SB1 A;  2ANR A;  3RF2 A;  3T1Y H;  4B8T A;  2Z0S A;  5IWA H;  1XMO H;  4DR5 H;  4NXN H;  1J5E H;  1N32 H;  1K1G A;  4FJS A;  2E5L H;  2OPV A;  4JYA H;  2YQR A;  1WHR A;  4DV3 H;  4OD6 A;  2CTM A;  5JEA G;  4JI7 H;  4X62 H;  4DR7 H;  2ZQE A;  4K0K H;  4LIJ A;  4B3M H;  4B3T H;  2JA9 A;  2CTJ A;  2HH2 A;  5LMU H;  1HR0 H;  4LFC H;  1AN7 A;  3GKU A;  4WAL A;  4YHH H;  4DV2 H;  1XNR H;  2NN6 G;  2Y3M A;  4NZR M;  4NZT M;  4X64 H;  4JI8 H;  2BL5 A;  2P2R A;  4DV0 H;  3GR5 A;  3J80 W;  2LTM A; 
#chains in the Genus database with same CATH homology
 3AEV B;  2CPQ A;  2CTK A;  2ANR A;  2MJH A;  3U1K A;  4JVY A;  4B8T A;  2Z0S A;  5K36 G;  2QND A;  1VIG A;  1ZZK A;  3VKE A;  1K1G A;  2FMR A;  4OO1 G;  2DGR A;  2CTL A;  2OPV A;  2JEB I;  2YQR A;  1DT4 A;  1X4M A;  2CTM A;  5JEA G;  1KHM A;  2JEA I;  4LIJ A;  2ANN A;  2PQU A;  4NBQ A;  5C0X G;  2AXY A;  1EC6 A;  1DTJ A;  4WAN A;  1X4N A;  4AM3 A;  2JA9 A;  1ZZJ A;  2CTJ A;  2HH2 A;  2CTF A;  3V69 A;  2P2R A;  4AIM A;  2HH3 A;  1WE8 A;  4WAL A;  2JVZ A;  1ZTG A;  3L7Z C;  2PY9 A;  4QMF B;  2CTE A;  1J5K A;  2NN6 G;  4IFD G;  2BA0 A;  1ZZI A;  4JVH A;  1TUA A;  1J4W A;  2E3U A;  2JZX A;  2BL5 A;  2JE6 I;  1WVN A;  2OPU A;  4BA2 I;  4BA1 I;  1VIH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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