1K1G | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	122
structure length	122
Chain Sequence	TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 122 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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122 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Gene regulation/rna
source organism	Homo sapiens
publication title	Structural basis for recognition of the intron branch site RNA by splicing factor 1. pubmed doi rcsb
molecule keywords	5'-R(UPAPUPAPCPUPAPAPCPAP*A)-3'
total genus	24
structure length	122
sequence length	122
ec nomenclature
pdb deposition date	2001-09-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	1k1gA00

4IFDG 2NN6G 1X4NA 1ZZKA 1X4MA 2OPVA 4BA1I 2PQUA 2FMRA 2E3UA 1ZZIA 2JZXA 2BA0A 1WE8A 2CTMA 2OPUA 3U1KA 4AIMA 3L7ZC 3AEVB 4BA2I 2MJHA 2CTJA 2CPQA 2CTKA 2JEAI 4AM3A 4JVYA 2JE6I 1TUAA 1KHMA 2BL5A 4NBQA 5JEAG 2HH2A 4QMFB 4WANA 2CTLA 2QNDA 2CTEA 4LIJA 2HH3A 2PY9A 2ANRA 1ZZJA 4WALA 2JEBI 3VKEA 2P2RA 1VIGA 1WVNA 2Z0SA 5K36G 1DT4A 1ZTGA 1VIHA 1EC6A 2YQRA 2DGRA 2JA9A 1J5KA 2JVZA 4B8TA 2ANNA 1K1GA 2AXYA 3V69A 4JVHA 1DTJA 4OO1G 1J4WA 5C0XG 2CTFA
chains in the Genus database with same CATH superfamily

2CPMA 1ZZKA 1X4MA 4DR5H 3FAUA 4YY3H 5LL6b 2E3UA 1HNWH 4LF8H 2BA0A 2M6QA 2CTMA 2OPUA 3U1KA 4JI3H 5A2QW 2MJHA 4JYAH 4JI6H 4DV2H 3J7AK 3SB1A 1FKAH 2CWFA 5FLXW 4LF9H 2ZQEA 4AM3A 1X0AA 1UG8A 1Z2IA 2FPHX 2LRRA 2BL5A 2A1SA 4NBQA 1SEIA 5JEAG 4DV4H 4LFAH 1J5EH 2UXDH 4DV1H 2UXCH 4EC5A 1HR0H 4DV3H 4B3TH 5LMUH 2JEBI 1WVNA 5K36G 4B8CD 3OTOH 1DT4A 2LTMA 4DR2H 4DR6H 4LF5H 1ODHA 2AXYA 3V69A 4NXNH 1FJGH 2O4CA 5C0XG 1PQXA 4B3MH 4IFDG 1X4NA 1XMOH 4JI7H 2FMRA 1WTJA 1N34H 4BA2I 3GR5A 4B3RH 3L7ZC 4GKKH 5DT9A 2VQEH 4DR7H 2UXBH 4LF7H 2G8YA 2JEAI 2K1HA 3OSSD 2HHHH 2UUBH 4YHHH 4LFBH 1XNRH 1VBIA 2PY9A 2CTEA 2M8WA 3T1YH 1S03G 4X62H 4E9JA 3VKEA 2UUCH 1VIGA 1WHRA 4DV7H 4DUYH 1EC6A 2D9IA 3OETA 3QD7X 2ZM6H 2DGRA 1MSZA 2JVZA 4B8TA 4OO1G 2Y3MA 4H8AA 1AN7A 1V9NA 2OPVA 2X06A 4BA1I 2LTLA 2PQUA 5BR8H 2VKCA 4DV0H 1XNQH 3EZJA 1WE8A 1V8CA 4AIMA 4FJSA 3AEVB 4K0KH 2CTJA 1I6UA 1X9ZA 5IT9W 2CPQA 4FJUA 4JVYA 2JE6I 1TUAA 3GKUA 5IWAH 1KHMA 2PT7G 1XMQH 4PDBA 2E5LH 3KDGA 2HH2A 1HNXH 4JI0H 4WANA 1XRHA 2CTLA 2QNDA 1I94H 2HH3A 2VQFH 4KHPH 3T1HH 1IBKH 4OCHA 1ZZJA 4WALA 5LMNH 4DR4H 1N32H 2Z0SA 4DV6H 1ZTGA 2JA9A 1J5KA 2ANNA 4JV5H 4JI1H 2P2RA 4JI8H 4JVHA 1DTJA 1J4WA 2CTFA 4NZRM 4DR1H 4B3SH 4LF6H 1N36H 4GKJH 1ZZIA 2JZXA 1F0XA 2FFMA 3GABA 4X64H 4NXMH 3JAMW 4X66H 4OX9H 2CTKA 4DV5H 4G08A 4X65H 1IBLH 2CWHA 1N33H 3J81W 1HNZH 1IBMH 3I0PA 2UU9H 4QMFB 3J80W 4DUZH 3KDKA 4LIJA 4JI5H 2ANRA 4JI4H 4NZTM 4AQYH 1NXUA 3NCVA 4JI2H 3RF2A 1VIHA 2LF0A 1S20A 2YQRA 4LFCH 2F4VH 1K1GA 4LF4H 4OD6A 2NN6G 4DR3H 3UOEA 2UUAH
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4IFD G;  2NN6 G;  1X4N A;  1ZZK A;  1X4M A;  2OPV A;  4BA1 I;  2PQU A;  2FMR A;  2E3U A;  1ZZI A;  2JZX A;  2BA0 A;  1WE8 A;  2CTM A;  2OPU A;  3U1K A;  4AIM A;  3L7Z C;  3AEV B;  4BA2 I;  2MJH A;  2CTJ A;  2CPQ A;  2CTK A;  2JEA I;  4AM3 A;  4JVY A;  2JE6 I;  1TUA A;  1KHM A;  2BL5 A;  4NBQ A;  5JEA G;  2HH2 A;  4QMF B;  4WAN A;  2CTL A;  2QND A;  2CTE A;  4LIJ A;  2HH3 A;  2PY9 A;  2ANR A;  1ZZJ A;  4WAL A;  2JEB I;  3VKE A;  2P2R A;  1VIG A;  1WVN A;  2Z0S A;  5K36 G;  1DT4 A;  1ZTG A;  1VIH A;  1EC6 A;  2YQR A;  2DGR A;  2JA9 A;  1J5K A;  2JVZ A;  4B8T A;  2ANN A;  1K1G A;  2AXY A;  3V69 A;  4JVH A;  1DTJ A;  4OO1 G;  1J4W A;  5C0X G;  2CTF A; 
#chains in the Genus database with same CATH topology
 2CPM A;  1ZZK A;  1X4M A;  4DR5 H;  3FAU A;  4YY3 H;  5LL6 b;  2E3U A;  1HNW H;  4LF8 H;  2BA0 A;  2M6Q A;  2CTM A;  2OPU A;  3U1K A;  4JI3 H;  5A2Q W;  2MJH A;  4JYA H;  4JI6 H;  4DV2 H;  3J7A K;  3SB1 A;  1FKA H;  2CWF A;  5FLX W;  4LF9 H;  2ZQE A;  4AM3 A;  1X0A A;  1UG8 A;  1Z2I A;  2FPH X;  2LRR A;  2BL5 A;  2A1S A;  4NBQ A;  1SEI A;  5JEA G;  4DV4 H;  4LFA H;  1J5E H;  2UXD H;  4DV1 H;  2UXC H;  4EC5 A;  1HR0 H;  4DV3 H;  4B3T H;  5LMU H;  2JEB I;  1WVN A;  5K36 G;  4B8C D;  3OTO H;  1DT4 A;  2LTM A;  4DR2 H;  4DR6 H;  4LF5 H;  1ODH A;  2AXY A;  3V69 A;  4NXN H;  1FJG H;  2O4C A;  5C0X G;  1PQX A;  4B3M H;  4IFD G;  1X4N A;  1XMO H;  4JI7 H;  2FMR A;  1WTJ A;  1N34 H;  4BA2 I;  3GR5 A;  4B3R H;  3L7Z C;  4GKK H;  5DT9 A;  2VQE H;  4DR7 H;  2UXB H;  4LF7 H;  2G8Y A;  2JEA I;  2K1H A;  3OSS D;  2HHH H;  2UUB H;  4YHH H;  4LFB H;  1XNR H;  1VBI A;  2PY9 A;  2CTE A;  2M8W A;  3T1Y H;  1S03 G;  4X62 H;  4E9J A;  3VKE A;  2UUC H;  1VIG A;  1WHR A;  4DV7 H;  4DUY H;  1EC6 A;  2D9I A;  3OET A;  3QD7 X;  2ZM6 H;  2DGR A;  1MSZ A;  2JVZ A;  4B8T A;  4OO1 G;  2Y3M A;  4H8A A;  1AN7 A;  1V9N A;  2OPV A;  2X06 A;  4BA1 I;  2LTL A;  2PQU A;  5BR8 H;  2VKC A;  4DV0 H;  1XNQ H;  3EZJ A;  1WE8 A;  1V8C A;  4AIM A;  4FJS A;  3AEV B;  4K0K H;  2CTJ A;  1I6U A;  1X9Z A;  5IT9 W;  2CPQ A;  4FJU A;  4JVY A;  2JE6 I;  1TUA A;  3GKU A;  5IWA H;  1KHM A;  2PT7 G;  1XMQ H;  4PDB A;  2E5L H;  3KDG A;  2HH2 A;  1HNX H;  4JI0 H;  4WAN A;  1XRH A;  2CTL A;  2QND A;  1I94 H;  2HH3 A;  2VQF H;  4KHP H;  3T1H H;  1IBK H;  4OCH A;  1ZZJ A;  4WAL A;  5LMN H;  4DR4 H;  1N32 H;  2Z0S A;  4DV6 H;  1ZTG A;  2JA9 A;  1J5K A;  2ANN A;  4JV5 H;  4JI1 H;  2P2R A;  4JI8 H;  4JVH A;  1DTJ A;  1J4W A;  2CTF A;  4NZR M;  4DR1 H;  4B3S H;  4LF6 H;  1N36 H;  4GKJ H;  1ZZI A;  2JZX A;  1F0X A;  2FFM A;  3GAB A;  4X64 H;  4NXM H;  3JAM W;  4X66 H;  4OX9 H;  2CTK A;  4DV5 H;  4G08 A;  4X65 H;  1IBL H;  2CWH A;  1N33 H;  3J81 W;  1HNZ H;  1IBM H;  3I0P A;  2UU9 H;  4QMF B;  3J80 W;  4DUZ H;  3KDK A;  4LIJ A;  4JI5 H;  2ANR A;  4JI4 H;  4NZT M;  4AQY H;  1NXU A;  3NCV A;  4JI2 H;  3RF2 A;  1VIH A;  2LF0 A;  1S20 A;  2YQR A;  4LFC H;  2F4V H;  1K1G A;  4LF4 H;  4OD6 A;  2NN6 G;  4DR3 H;  3UOE A;  2UUA H; 
#chains in the Genus database with same CATH homology
 4IFD G;  2NN6 G;  1X4N A;  1ZZK A;  1X4M A;  2OPV A;  4BA1 I;  2PQU A;  2FMR A;  2E3U A;  1ZZI A;  2JZX A;  2BA0 A;  1WE8 A;  2CTM A;  2OPU A;  3U1K A;  4AIM A;  3L7Z C;  3AEV B;  4BA2 I;  2MJH A;  2CTJ A;  2CPQ A;  2CTK A;  2JEA I;  4AM3 A;  4JVY A;  2JE6 I;  1TUA A;  1KHM A;  2BL5 A;  4NBQ A;  5JEA G;  2HH2 A;  4QMF B;  4WAN A;  2CTL A;  2QND A;  2CTE A;  4LIJ A;  2HH3 A;  2PY9 A;  2ANR A;  1ZZJ A;  4WAL A;  2JEB I;  3VKE A;  2P2R A;  1VIG A;  1WVN A;  2Z0S A;  5K36 G;  1DT4 A;  1ZTG A;  1VIH A;  1EC6 A;  2YQR A;  2DGR A;  2JA9 A;  1J5K A;  2JVZ A;  4B8T A;  2ANN A;  1K1G A;  2AXY A;  3V69 A;  4JVH A;  1DTJ A;  4OO1 G;  1J4W A;  5C0X G;  2CTF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1K1GA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations