1KHM | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	89
structure length	89
Chain Sequence	GSPNSYGDLGGPIITTQVTIPKDLARSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 89 atoms

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89 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rna binding protein
source organism	Homo sapiens
publication title	High precision solution structure of the C-terminal KH domain of heterogeneous nuclear ribonucleoprotein K, a c-myc transcription factor. pubmed doi rcsb
molecule keywords	PROTEIN (HNRNP K)
total genus	16
structure length	89
sequence length	89
ec nomenclature
pdb deposition date	1999-01-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	1khmA00

1VIGA 4JVHA 1VIHA 2CPQA 2QNDA 2Z0SA 5C0XG 1J5KA 1ZTGA 2DGRA 2OPVA 2HH3A 1J4WA 3U1KA 2CTLA 2BA0A 2JA9A 4LIJA 1K1GA 3AEVB 2HH2A 2ANRA 2JZXA 2CTKA 1X4NA 2AXYA 4QMFB 4WALA 2JEAI 1X4MA 2MJHA 1WVNA 1EC6A 2JE6I 1WE8A 4AIMA 2BL5A 1TUAA 2OPUA 4JVYA 2CTMA 4NBQA 2CTFA 2CTEA 4IFDG 1ZZKA 1KHMA 2ANNA 5JEAG 2JVZA 3VKEA 3V69A 2FMRA 5K36G 4B8TA 1DT4A 2YQRA 1ZZIA 4AM3A 2NN6G 4BA2I 1ZZJA 4WANA 2CTJA 4OO1G 2E3UA 2PY9A 2PQUA 2JEBI 4BA1I 2P2RA 1DTJA 3L7ZC
chains in the Genus database with same CATH superfamily

3GR5A 2CPQA 2QNDA 4DUYH 3GABA 5DT9A 5C0XG 1AN7A 4DR1H 1J5KA 1J4WA 1ZTGA 4OX9H 1FJGH 4B3SH 2X06A 2JA9A 1V9NA 1K1GA 5LMUH 3OETA 2CTKA 2Y3MA 2O4CA 4E9JA 1ODHA 1XNQH 4DR2H 2MJHA 1WE8A 4AIMA 2BL5A 1X0AA 4G08A 2ANNA 1XMQH 2UXDH 4K0KH 2F4VH 4X65H 2FMRA 4YY3H 5A2QW 4JI7H 2UUCH 1HNZH 4AM3A 2NN6G 4BA2I 1ZZJA 1S20A 1HR0H 2E3UA 4DV3H 1I94H 4NZTM 4BA1I 2P2RA 3L7ZC 1VIGA 1N32H 4JI8H 3KDKA 2M8WA 4JI3H 4JI4H 2HH3A 2K1HA 1IBKH 2G8YA 3OTOH 3U1KA 4B3MH 2BA0A 2UU9H 1UG8A 2D9IA 4AQYH 3AEVB 2UXBH 2UXCH 4B3TH 3GKUA 4JI5H 1PQXA 2LF0A 3QD7X 1X4MA 1EC6A 4B8CD 1HNXH 2LRRA 2JE6I 5LMNH 4JYAH 1WHRA 4LF6H 2LTMA 2CTMA 1ZZKA 4DV5H 1VBIA 4EC5A 2JVZA 4DV7H 3V69A 1XMOH 1I6UA 5K36G 2VQEH 2FPHX 3FAUA 3J80W 1IBMH 2UUAH 2PT7G 1XRHA 4NZRM 4JI0H 2VKCA 2PQUA 1N33H 1DTJA 1N34H 4FJUA 4DV0H 2CPMA 2DGRA 2CWHA 4LF5H 4LF8H 4DUZH 2HHHH 2CTLA 5LL6b 4LFAH 4LF4H 4DV2H 1FKAH 2JZXA 1X4NA 3OSSD 3T1YH 2AXYA 4QMFB 4LF9H 1F0XA 4DR4H 1Z2IA 2JEAI 1N36H 4B3RH 4GKJH 4JVYA 5IT9W 4LFBH 3NCVA 4NBQA 2M6QA 2CTEA 1XNRH 2LTLA 4JI2H 1KHMA 5FLXW 1WTJA 4B8TA 3I0PA 4FJSA 1ZZIA 4PDBA 1MSZA 3KDGA 4JI6H 4DR7H 2ZQEA 2FFMA 2PY9A 2JEBI 4NXNH 1NXUA 3EZJA 4JVHA 1VIHA 4DR3H 2Z0SA 4YHHH 4LFCH 4DV6H 3SB1A 2OPVA 1V8CA 4LIJA 4H8AA 5IWAH 2ZM6H 2HH2A 2ANRA 3UOEA 2E5LH 4DV1H 4X64H 2CWFA 5BR8H 4WALA 1IBLH 3JAMW 1WVNA 4LF7H 1TUAA 4JI1H 2OPUA 2UUBH 2CTFA 1S03G 4GKKH 4OD6A 4IFDG 4NXMH 4OCHA 5JEAG 2A1SA 3J81W 3VKEA 3J7AK 4KHPH 2VQFH 1DT4A 4JV5H 4DV4H 1X9ZA 2YQRA 4X66H 4WANA 3RF2A 2CTJA 3T1HH 4OO1G 1SEIA 4DR6H 1HNWH 1J5EH 4X62H 4DR5H
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1VIG A;  4JVH A;  1VIH A;  2CPQ A;  2QND A;  2Z0S A;  5C0X G;  1J5K A;  1ZTG A;  2DGR A;  2OPV A;  2HH3 A;  1J4W A;  3U1K A;  2CTL A;  2BA0 A;  2JA9 A;  4LIJ A;  1K1G A;  3AEV B;  2HH2 A;  2ANR A;  2JZX A;  2CTK A;  1X4N A;  2AXY A;  4QMF B;  4WAL A;  2JEA I;  1X4M A;  2MJH A;  1WVN A;  1EC6 A;  2JE6 I;  1WE8 A;  4AIM A;  2BL5 A;  1TUA A;  2OPU A;  4JVY A;  2CTM A;  4NBQ A;  2CTF A;  2CTE A;  4IFD G;  1ZZK A;  1KHM A;  2ANN A;  5JEA G;  2JVZ A;  3VKE A;  3V69 A;  2FMR A;  5K36 G;  4B8T A;  1DT4 A;  2YQR A;  1ZZI A;  4AM3 A;  2NN6 G;  4BA2 I;  1ZZJ A;  4WAN A;  2CTJ A;  4OO1 G;  2E3U A;  2PY9 A;  2PQU A;  2JEB I;  4BA1 I;  2P2R A;  1DTJ A;  3L7Z C; 
#chains in the Genus database with same CATH topology
 3GR5 A;  2CPQ A;  2QND A;  4DUY H;  3GAB A;  5DT9 A;  5C0X G;  1AN7 A;  4DR1 H;  1J5K A;  1J4W A;  1ZTG A;  4OX9 H;  1FJG H;  4B3S H;  2X06 A;  2JA9 A;  1V9N A;  1K1G A;  5LMU H;  3OET A;  2CTK A;  2Y3M A;  2O4C A;  4E9J A;  1ODH A;  1XNQ H;  4DR2 H;  2MJH A;  1WE8 A;  4AIM A;  2BL5 A;  1X0A A;  4G08 A;  2ANN A;  1XMQ H;  2UXD H;  4K0K H;  2F4V H;  4X65 H;  2FMR A;  4YY3 H;  5A2Q W;  4JI7 H;  2UUC H;  1HNZ H;  4AM3 A;  2NN6 G;  4BA2 I;  1ZZJ A;  1S20 A;  1HR0 H;  2E3U A;  4DV3 H;  1I94 H;  4NZT M;  4BA1 I;  2P2R A;  3L7Z C;  1VIG A;  1N32 H;  4JI8 H;  3KDK A;  2M8W A;  4JI3 H;  4JI4 H;  2HH3 A;  2K1H A;  1IBK H;  2G8Y A;  3OTO H;  3U1K A;  4B3M H;  2BA0 A;  2UU9 H;  1UG8 A;  2D9I A;  4AQY H;  3AEV B;  2UXB H;  2UXC H;  4B3T H;  3GKU A;  4JI5 H;  1PQX A;  2LF0 A;  3QD7 X;  1X4M A;  1EC6 A;  4B8C D;  1HNX H;  2LRR A;  2JE6 I;  5LMN H;  4JYA H;  1WHR A;  4LF6 H;  2LTM A;  2CTM A;  1ZZK A;  4DV5 H;  1VBI A;  4EC5 A;  2JVZ A;  4DV7 H;  3V69 A;  1XMO H;  1I6U A;  5K36 G;  2VQE H;  2FPH X;  3FAU A;  3J80 W;  1IBM H;  2UUA H;  2PT7 G;  1XRH A;  4NZR M;  4JI0 H;  2VKC A;  2PQU A;  1N33 H;  1DTJ A;  1N34 H;  4FJU A;  4DV0 H;  2CPM A;  2DGR A;  2CWH A;  4LF5 H;  4LF8 H;  4DUZ H;  2HHH H;  2CTL A;  5LL6 b;  4LFA H;  4LF4 H;  4DV2 H;  1FKA H;  2JZX A;  1X4N A;  3OSS D;  3T1Y H;  2AXY A;  4QMF B;  4LF9 H;  1F0X A;  4DR4 H;  1Z2I A;  2JEA I;  1N36 H;  4B3R H;  4GKJ H;  4JVY A;  5IT9 W;  4LFB H;  3NCV A;  4NBQ A;  2M6Q A;  2CTE A;  1XNR H;  2LTL A;  4JI2 H;  1KHM A;  5FLX W;  1WTJ A;  4B8T A;  3I0P A;  4FJS A;  1ZZI A;  4PDB A;  1MSZ A;  3KDG A;  4JI6 H;  4DR7 H;  2ZQE A;  2FFM A;  2PY9 A;  2JEB I;  4NXN H;  1NXU A;  3EZJ A;  4JVH A;  1VIH A;  4DR3 H;  2Z0S A;  4YHH H;  4LFC H;  4DV6 H;  3SB1 A;  2OPV A;  1V8C A;  4LIJ A;  4H8A A;  5IWA H;  2ZM6 H;  2HH2 A;  2ANR A;  3UOE A;  2E5L H;  4DV1 H;  4X64 H;  2CWF A;  5BR8 H;  4WAL A;  1IBL H;  3JAM W;  1WVN A;  4LF7 H;  1TUA A;  4JI1 H;  2OPU A;  2UUB H;  2CTF A;  1S03 G;  4GKK H;  4OD6 A;  4IFD G;  4NXM H;  4OCH A;  5JEA G;  2A1S A;  3J81 W;  3VKE A;  3J7A K;  4KHP H;  2VQF H;  1DT4 A;  4JV5 H;  4DV4 H;  1X9Z A;  2YQR A;  4X66 H;  4WAN A;  3RF2 A;  2CTJ A;  3T1H H;  4OO1 G;  1SEI A;  4DR6 H;  1HNW H;  1J5E H;  4X62 H;  4DR5 H; 
#chains in the Genus database with same CATH homology
 1VIG A;  4JVH A;  1VIH A;  2CPQ A;  2QND A;  2Z0S A;  5C0X G;  1J5K A;  1ZTG A;  2DGR A;  2OPV A;  2HH3 A;  1J4W A;  3U1K A;  2CTL A;  2BA0 A;  2JA9 A;  4LIJ A;  1K1G A;  3AEV B;  2HH2 A;  2ANR A;  2JZX A;  2CTK A;  1X4N A;  2AXY A;  4QMF B;  4WAL A;  2JEA I;  1X4M A;  2MJH A;  1WVN A;  1EC6 A;  2JE6 I;  1WE8 A;  4AIM A;  2BL5 A;  1TUA A;  2OPU A;  4JVY A;  2CTM A;  4NBQ A;  2CTF A;  2CTE A;  4IFD G;  1ZZK A;  1KHM A;  2ANN A;  5JEA G;  2JVZ A;  3VKE A;  3V69 A;  2FMR A;  5K36 G;  4B8T A;  1DT4 A;  2YQR A;  1ZZI A;  4AM3 A;  2NN6 G;  4BA2 I;  1ZZJ A;  4WAN A;  2CTJ A;  4OO1 G;  2E3U A;  2PY9 A;  2PQU A;  2JEB I;  4BA1 I;  2P2R A;  1DTJ A;  3L7Z C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1KHMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations