1MSZ | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	62
structure length	62
Chain Sequence	GVDHFRAMIVEFMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 62 atoms

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62 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Dna binding protein
source organism	Homo sapiens
publication title	Solution structure of the R3H domain from human Smubp-2 pubmed doi rcsb
molecule keywords	DNA-binding protein SMUBP-2
total genus	14
structure length	62
sequence length	62
ec nomenclature	ec 3.6.4.12: DNA helicase.
pdb deposition date	2002-09-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01424	R3H	R3H domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.50	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	R3H-like domain	1mszA00

3GKUA 1WHRA 2CPMA 1MSZA 2A1SA 2LRRA 1UG8A
chains in the Genus database with same CATH superfamily

4DV6H 1WHRA 2LF0A 1ZZIA 4OD6A 3EZJA 1J5KA 4JVHA 5LMNH 5FLXW 4B8TA 4JI1H 1X4NA 1HNWH 4DR7H 4GKKH 2MJHA 2UXCH 3SB1A 4G08A 2ZM6H 4OX9H 1J4WA 2FMRA 4NZRM 2CTFA 1J5EH 2HH2A 3QD7X 4NXNH 4AM3A 1EC6A 2VQFH 2JEAI 1XRHA 3NCVA 1N32H 5BR8H 1XMOH 4LF4H 3T1HH 2M8WA 5C0XG 1WE8A 4WANA 2G8YA 4NBQA 3RF2A 2Z0SA 1X0AA 4B3SH 2CWHA 1XNQH 4OO1G 4JI7H 1VIHA 2PT7G 3J81W 1FJGH 1N36H 1FKAH 4QMFB 4B3RH 1IBKH 1ZTGA 2AXYA 2D9IA 3V69A 5LMUH 1KHMA 4H8AA 4JI3H 4JI4H 4LF9H 1HR0H 2UXBH 2UU9H 2HH3A 1SEIA 4LF5H 1ZZKA 4BA2I 2CPMA 2JZXA 1I6UA 4JV5H 4X64H 1AN7A 1F0XA 3FAUA 4DR4H 4JI2H 4DV2H 1NXUA 5LL6b 1WTJA 2BA0A 4AQYH 4JI6H 4DR3H 2BL5A 3L7ZC 4AIMA 4DV1H 4LF8H 1I94H 2PQUA 1UG8A 4DV0H 2E5LH 1DTJA 2JEBI 1MSZA 3T1YH 4LF7H 4K0KH 2CPQA 3KDGA 1X9ZA 3OETA 4DV3H 1S03G 1V9NA 4OCHA 2UUBH 2VQEH 2CTJA 4YHHH 2ZQEA 2Y3MA 2QNDA 4LFAH 4EC5A 2A1SA 4FJSA 1VIGA 5IWAH 4DR5H 4B3TH 2PY9A 4GKJH 2CTKA 4B8CD 3VKEA 2LTMA 2ANNA 4X62H 1HNXH 4DR6H 2YQRA 2NN6G 2UXDH 2JVZA 4DR2H 2OPUA 2VKCA 1VBIA 4KHPH 4X65H 5K36G 3J80W 4DUYH 2F4VH 1N33H 2K1HA 4LFCH 2HHHH 1V8CA 1IBLH 3U1KA 1K1GA 1IBMH 4NZTM 4X66H 2M6QA 2X06A 2FFMA 2ANRA 4JI8H 5A2QW 2CTLA 5JEAG 3UOEA 1HNZH 2CWFA 4IFDG 5IT9W 3GABA 1S20A 1ZZJA 4DV7H 1N34H 1Z2IA 3AEVB 1X4MA 3GKUA 2JA9A 2JE6I 4DV5H 4DV4H 1DT4A 2CTEA 4WALA 2FPHX 2P2RA 4PDBA 1XMQH 1TUAA 4JYAH 2CTMA 4BA1I 4LIJA 4DR1H 2OPVA 4JI5H 3I0PA 4DUZH 4B3MH 4JI0H 2O4CA 2UUAH 3JAMW 1WVNA 3OTOH 2DGRA 3J7AK 1ODHA 4YY3H 4JVYA 1XNRH 4LFBH 5DT9A 2E3UA 3GR5A 4FJUA 1PQXA 2LRRA 2LTLA 2UUCH 4LF6H 4E9JA 4NXMH 3OSSD 3KDKA
chains in the Genus database with same CATH topology

3GKUA 1WHRA 2CPMA 1MSZA 2A1SA 2LRRA 1UG8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3GKU A;  1WHR A;  2CPM A;  1MSZ A;  2A1S A;  2LRR A;  1UG8 A; 
#chains in the Genus database with same CATH topology
 4DV6 H;  1WHR A;  2LF0 A;  1ZZI A;  4OD6 A;  3EZJ A;  1J5K A;  4JVH A;  5LMN H;  5FLX W;  4B8T A;  4JI1 H;  1X4N A;  1HNW H;  4DR7 H;  4GKK H;  2MJH A;  2UXC H;  3SB1 A;  4G08 A;  2ZM6 H;  4OX9 H;  1J4W A;  2FMR A;  4NZR M;  2CTF A;  1J5E H;  2HH2 A;  3QD7 X;  4NXN H;  4AM3 A;  1EC6 A;  2VQF H;  2JEA I;  1XRH A;  3NCV A;  1N32 H;  5BR8 H;  1XMO H;  4LF4 H;  3T1H H;  2M8W A;  5C0X G;  1WE8 A;  4WAN A;  2G8Y A;  4NBQ A;  3RF2 A;  2Z0S A;  1X0A A;  4B3S H;  2CWH A;  1XNQ H;  4OO1 G;  4JI7 H;  1VIH A;  2PT7 G;  3J81 W;  1FJG H;  1N36 H;  1FKA H;  4QMF B;  4B3R H;  1IBK H;  1ZTG A;  2AXY A;  2D9I A;  3V69 A;  5LMU H;  1KHM A;  4H8A A;  4JI3 H;  4JI4 H;  4LF9 H;  1HR0 H;  2UXB H;  2UU9 H;  2HH3 A;  1SEI A;  4LF5 H;  1ZZK A;  4BA2 I;  2CPM A;  2JZX A;  1I6U A;  4JV5 H;  4X64 H;  1AN7 A;  1F0X A;  3FAU A;  4DR4 H;  4JI2 H;  4DV2 H;  1NXU A;  5LL6 b;  1WTJ A;  2BA0 A;  4AQY H;  4JI6 H;  4DR3 H;  2BL5 A;  3L7Z C;  4AIM A;  4DV1 H;  4LF8 H;  1I94 H;  2PQU A;  1UG8 A;  4DV0 H;  2E5L H;  1DTJ A;  2JEB I;  1MSZ A;  3T1Y H;  4LF7 H;  4K0K H;  2CPQ A;  3KDG A;  1X9Z A;  3OET A;  4DV3 H;  1S03 G;  1V9N A;  4OCH A;  2UUB H;  2VQE H;  2CTJ A;  4YHH H;  2ZQE A;  2Y3M A;  2QND A;  4LFA H;  4EC5 A;  2A1S A;  4FJS A;  1VIG A;  5IWA H;  4DR5 H;  4B3T H;  2PY9 A;  4GKJ H;  2CTK A;  4B8C D;  3VKE A;  2LTM A;  2ANN A;  4X62 H;  1HNX H;  4DR6 H;  2YQR A;  2NN6 G;  2UXD H;  2JVZ A;  4DR2 H;  2OPU A;  2VKC A;  1VBI A;  4KHP H;  4X65 H;  5K36 G;  3J80 W;  4DUY H;  2F4V H;  1N33 H;  2K1H A;  4LFC H;  2HHH H;  1V8C A;  1IBL H;  3U1K A;  1K1G A;  1IBM H;  4NZT M;  4X66 H;  2M6Q A;  2X06 A;  2FFM A;  2ANR A;  4JI8 H;  5A2Q W;  2CTL A;  5JEA G;  3UOE A;  1HNZ H;  2CWF A;  4IFD G;  5IT9 W;  3GAB A;  1S20 A;  1ZZJ A;  4DV7 H;  1N34 H;  1Z2I A;  3AEV B;  1X4M A;  3GKU A;  2JA9 A;  2JE6 I;  4DV5 H;  4DV4 H;  1DT4 A;  2CTE A;  4WAL A;  2FPH X;  2P2R A;  4PDB A;  1XMQ H;  1TUA A;  4JYA H;  2CTM A;  4BA1 I;  4LIJ A;  4DR1 H;  2OPV A;  4JI5 H;  3I0P A;  4DUZ H;  4B3M H;  4JI0 H;  2O4C A;  2UUA H;  3JAM W;  1WVN A;  3OTO H;  2DGR A;  3J7A K;  1ODH A;  4YY3 H;  4JVY A;  1XNR H;  4LFB H;  5DT9 A;  2E3U A;  3GR5 A;  4FJU A;  1PQX A;  2LRR A;  2LTL A;  2UUC H;  4LF6 H;  4E9J A;  4NXM H;  3OSS D;  3KDK A; 
#chains in the Genus database with same CATH homology
 3GKU A;  1WHR A;  2CPM A;  1MSZ A;  2A1S A;  2LRR A;  1UG8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1MSZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations