1PQXA

Solution nmr structure of staphylococcus aureus protein sav1430. northeast strucutral genomics consortium target zr18.
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
91
structure length
91
Chain Sequence
MKIISISETPNHNTMKITLSESREGMTSDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAVFELEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution Strucutre of the Hypothetical Staphylococcus Aureus protein SAV1430. Northest Strucutral Genomics Consortium target ZR18
rcsb
molecule tags Structural genomics, unknown function
source organism Staphylococcus aureus subsp. aureus mu50
molecule keywords conserved hypothetical protein
total genus 10
structure length 91
sequence length 91
ec nomenclature
pdb deposition date 2003-06-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08712 Nfu_N Scaffold protein Nfu/NifU N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Scaffold protein Nfu/NifU, N-terminal domain 1pqxA00
2LTMA 2M8WA 1PQXA 2K1HA 2LTLA 2M6QA 2FFMA
chains in the Genus database with same CATH superfamily
3J80W 1V9NA 1HNZH 4BA1I 3RF2A 1N36H 3GKUA 1NXUA 2CWHA 1VBIA 4JI2H 1K1GA 2O4CA 3T1HH 2JA9A 2HH2A 5K36G 2E3UA 1SEIA 3GABA 4WALA 4B3MH 4LFBH 1XNRH 2MJHA 2QNDA 2VKCA 1FKAH 4DUYH 4LFAH 4GKJH 4X65H 2K1HA 2ANNA 4DV6H 4JVYA 2ANRA 4LF5H 4B3TH 1F0XA 2M6QA 2NN6G 2HHHH 3SB1A 1UG8A 4GKKH 2BL5A 4WANA 1ZZKA 1X4NA 4B8TA 5BR8H 4JI4H 5JEAG 2PY9A 4OX9H 1TUAA 2JEBI 4FJUA 1WTJA 1WHRA 1FJGH 1MSZA 5IT9W 1XNQH 2CPQA 1HR0H 4LFCH 2LRRA 4E9JA 2ZQEA 3OSSD 1DTJA 4DV1H 2D9IA 1IBKH 1AN7A 4X62H 4PDBA 2LF0A 3V69A 5FLXW 1I94H 5LMUH 4OCHA 4QMFB 3UOEA 1X9ZA 3KDGA 4B3SH 2M8WA 4LF8H 1S03G 1PQXA 2UXBH 2HH3A 1I6UA 3J81W 1VIGA 2VQEH 2YQRA 3OTOH 4DV7H 4DV4H 2CTMA 2Z0SA 2JEAI 2F4VH 4DR5H 3GR5A 1J5EH 3OETA 1IBMH 2BA0A 2CTJA 4G08A 1ZZJA 1HNXH 2UUBH 2UUCH 1X4MA 4KHPH 4X64H 4JI6H 2CTLA 3QD7X 4LF7H 3U1KA 2ZM6H 1J4WA 1V8CA 2Y3MA 4DV3H 4K0KH 4EC5A 4LF6H 2JZXA 2CPMA 3EZJA 1N32H 1S20A 2JVZA 1N34H 1J5KA 4LF9H 1EC6A 3NCVA 2LTLA 2CTFA 4NZRM 5C0XG 1X0AA 3I0PA 5IWAH 1ZZIA 1ODHA 3KDKA 1XMQH 4B3RH 1VIHA 2OPUA 4JI1H 4AQYH 3J7AK 3JAMW 2UXCH 4NXMH 3T1YH 2UXDH 1IBLH 4H8AA 2VQFH 1HNWH 3L7ZC 4DUZH 5LMNH 2OPVA 2E5LH 2LTMA 2PQUA 2CWFA 4YHHH 4IFDG 4LF4H 2FPHX 2PT7G 5DT9A 4JI0H 4JI7H 4JYAH 4JI3H 4DR6H 4DR3H 4BA2I 4DR2H 4NXNH 2JE6I 4JI8H 4FJSA 4OD6A 2FMRA 3AEVB 4JI5H 4JVHA 5LL6b 4DV2H 4OO1G 1ZTGA 4JV5H 1XRHA 4AIMA 2G8YA 1XMOH 4NZTM 1DT4A 4DR1H 2UU9H 4AM3A 4B8CD 3FAUA 1Z2IA 2CTEA 3VKEA 2X06A 4DV0H 2A1SA 2AXYA 2UUAH 4DR7H 1N33H 2P2RA 4DR4H 1WE8A 4DV5H 4LIJA 2DGRA 5A2QW 4YY3H 4NBQA 1KHMA 2CTKA 4X66H 1WVNA 2FFMA
chains in the Genus database with same CATH topology
2LTMA 2M8WA 1PQXA 2K1HA 2LTLA 2M6QA 2FFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LTM A;  2M8W A;  1PQX A;  2K1H A;  2LTL A;  2M6Q A;  2FFM A; 
#chains in the Genus database with same CATH topology
 3J80 W;  1V9N A;  1HNZ H;  4BA1 I;  3RF2 A;  1N36 H;  3GKU A;  1NXU A;  2CWH A;  1VBI A;  4JI2 H;  1K1G A;  2O4C A;  3T1H H;  2JA9 A;  2HH2 A;  5K36 G;  2E3U A;  1SEI A;  3GAB A;  4WAL A;  4B3M H;  4LFB H;  1XNR H;  2MJH A;  2QND A;  2VKC A;  1FKA H;  4DUY H;  4LFA H;  4GKJ H;  4X65 H;  2K1H A;  2ANN A;  4DV6 H;  4JVY A;  2ANR A;  4LF5 H;  4B3T H;  1F0X A;  2M6Q A;  2NN6 G;  2HHH H;  3SB1 A;  1UG8 A;  4GKK H;  2BL5 A;  4WAN A;  1ZZK A;  1X4N A;  4B8T A;  5BR8 H;  4JI4 H;  5JEA G;  2PY9 A;  4OX9 H;  1TUA A;  2JEB I;  4FJU A;  1WTJ A;  1WHR A;  1FJG H;  1MSZ A;  5IT9 W;  1XNQ H;  2CPQ A;  1HR0 H;  4LFC H;  2LRR A;  4E9J A;  2ZQE A;  3OSS D;  1DTJ A;  4DV1 H;  2D9I A;  1IBK H;  1AN7 A;  4X62 H;  4PDB A;  2LF0 A;  3V69 A;  5FLX W;  1I94 H;  5LMU H;  4OCH A;  4QMF B;  3UOE A;  1X9Z A;  3KDG A;  4B3S H;  2M8W A;  4LF8 H;  1S03 G;  1PQX A;  2UXB H;  2HH3 A;  1I6U A;  3J81 W;  1VIG A;  2VQE H;  2YQR A;  3OTO H;  4DV7 H;  4DV4 H;  2CTM A;  2Z0S A;  2JEA I;  2F4V H;  4DR5 H;  3GR5 A;  1J5E H;  3OET A;  1IBM H;  2BA0 A;  2CTJ A;  4G08 A;  1ZZJ A;  1HNX H;  2UUB H;  2UUC H;  1X4M A;  4KHP H;  4X64 H;  4JI6 H;  2CTL A;  3QD7 X;  4LF7 H;  3U1K A;  2ZM6 H;  1J4W A;  1V8C A;  2Y3M A;  4DV3 H;  4K0K H;  4EC5 A;  4LF6 H;  2JZX A;  2CPM A;  3EZJ A;  1N32 H;  1S20 A;  2JVZ A;  1N34 H;  1J5K A;  4LF9 H;  1EC6 A;  3NCV A;  2LTL A;  2CTF A;  4NZR M;  5C0X G;  1X0A A;  3I0P A;  5IWA H;  1ZZI A;  1ODH A;  3KDK A;  1XMQ H;  4B3R H;  1VIH A;  2OPU A;  4JI1 H;  4AQY H;  3J7A K;  3JAM W;  2UXC H;  4NXM H;  3T1Y H;  2UXD H;  1IBL H;  4H8A A;  2VQF H;  1HNW H;  3L7Z C;  4DUZ H;  5LMN H;  2OPV A;  2E5L H;  2LTM A;  2PQU A;  2CWF A;  4YHH H;  4IFD G;  4LF4 H;  2FPH X;  2PT7 G;  5DT9 A;  4JI0 H;  4JI7 H;  4JYA H;  4JI3 H;  4DR6 H;  4DR3 H;  4BA2 I;  4DR2 H;  4NXN H;  2JE6 I;  4JI8 H;  4FJS A;  4OD6 A;  2FMR A;  3AEV B;  4JI5 H;  4JVH A;  5LL6 b;  4DV2 H;  4OO1 G;  1ZTG A;  4JV5 H;  1XRH A;  4AIM A;  2G8Y A;  1XMO H;  4NZT M;  1DT4 A;  4DR1 H;  2UU9 H;  4AM3 A;  4B8C D;  3FAU A;  1Z2I A;  2CTE A;  3VKE A;  2X06 A;  4DV0 H;  2A1S A;  2AXY A;  2UUA H;  4DR7 H;  1N33 H;  2P2R A;  4DR4 H;  1WE8 A;  4DV5 H;  4LIJ A;  2DGR A;  5A2Q W;  4YY3 H;  4NBQ A;  1KHM A;  2CTK A;  4X66 H;  1WVN A;  2FFM A; 
#chains in the Genus database with same CATH homology
 2LTM A;  2M8W A;  1PQX A;  2K1H A;  2LTL A;  2M6Q A;  2FFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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