1WHR | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	124
structure length	124
Chain Sequence	GSSGSSGTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 124 atoms

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124 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Structural genomics, unknown function
source organism	Homo sapiens
publication title	Solution structure of the R3H domain from human hypothetical protein BAA76846 rcsb
molecule keywords	Hypothetical KIAA1002 protein
total genus	21
structure length	124
sequence length	124
ec nomenclature
pdb deposition date	2004-05-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01424	R3H	R3H domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.50	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	R3H-like domain	1whrA00

2CPMA 1MSZA 1WHRA 1UG8A 2LRRA 3GKUA 2A1SA
chains in the Genus database with same CATH superfamily

4JI0H 1WE8A 2CTFA 2UUCH 4IFDG 4YHHH 4LFBH 1X4MA 2P2RA 3V69A 2CTLA 2CWHA 1VBIA 2JE6I 4NXMH 4NXNH 1IBKH 3KDGA 1FJGH 3QD7X 2UUBH 4LFAH 2DGRA 2M6QA 4DV7H 2FMRA 2K1HA 3GABA 4LIJA 4JI7H 4OO1G 1KHMA 5LMUH 2G8YA 4KHPH 3JAMW 1WTJA 2CTJA 5IWAH 1VIHA 2OPVA 1K1GA 3T1HH 2JEAI 1WHRA 1UG8A 2LTMA 2NN6G 2PT7G 3GKUA 1VIGA 2CPMA 1X9ZA 4X62H 4DR4H 4JI8H 2VQFH 2Z0SA 4DR2H 2Y3MA 2LTLA 3KDKA 3J7AK 4AM3A 2ANNA 4BA1I 2O4CA 5JEAG 1ODHA 4LFCH 4BA2I 1ZZIA 1XRHA 2OPUA 2VKCA 3T1YH 1HNZH 1IBMH 2JVZA 1J5KA 4DUYH 4X65H 1J4WA 4LF8H 4LF7H 1I6UA 2HH2A 1X0AA 2UXDH 2CWFA 1SEIA 1DTJA 1J5EH 2E5LH 1NXUA 2YQRA 2UXBH 1HR0H 1F0XA 1XMOH 3GR5A 4JVHA 2CTEA 5DT9A 1EC6A 2CTKA 4GKJH 4LF5H 4B8CD 3UOEA 4PDBA 2PY9A 2JA9A 4X66H 4DR1H 1V9NA 3I0PA 4YY3H 4JI3H 4JI6H 2LRRA 4DV5H 2A1SA 4OCHA 1MSZA 4JYAH 4B3MH 3L7ZC 1XNQH 1DT4A 3RF2A 5A2QW 2MJHA 4DR3H 4NZRM 2D9IA 1FKAH 2VQEH 4FJUA 5LMNH 4DV1H 4B3SH 4JI5H 2CTMA 2ZM6H 4JV5H 4DR7H 3J80W 2UXCH 4DV6H 4DV3H 2FPHX 2ZQEA 3OETA 4DV4H 2FFMA 1PQXA 4EC5A 2UUAH 5BR8H 3AEVB 4NBQA 4GKKH 1ZZKA 1N34H 1V8CA 2E3UA 3SB1A 2X06A 2HHHH 4H8AA 4OX9H 1N36H 4B3TH 1WVNA 1HNXH 4E9JA 2UU9H 4DV2H 2LF0A 4FJSA 4X64H 3NCVA 3EZJA 2PQUA 4LF6H 1XMQH 2JEBI 4QMFB 3J81W 4DR5H 2BL5A 2BA0A 4WALA 1N33H 2ANRA 1ZZJA 4JI4H 1Z2IA 2QNDA 5C0XG 4B3RH 4DR6H 4DUZH 1IBLH 3OSSD 3OTOH 3VKEA 1X4NA 2CPQA 4G08A 3U1KA 4OD6A 2JZXA 3FAUA 1TUAA 1AN7A 1I94H 4JVYA 4DV0H 4WANA 5K36G 5IT9W 1XNRH 1HNWH 4NZTM 4LF4H 2HH3A 2M8WA 1ZTGA 2F4VH 5FLXW 4B8TA 4LF9H 1S03G 4K0KH 1N32H 4JI2H 4AQYH 4AIMA 5LL6b 2AXYA 1S20A 4JI1H
chains in the Genus database with same CATH topology

2CPMA 1MSZA 1WHRA 1UG8A 2LRRA 3GKUA 2A1SA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2CPM A;  1MSZ A;  1WHR A;  1UG8 A;  2LRR A;  3GKU A;  2A1S A; 
#chains in the Genus database with same CATH topology
 4JI0 H;  1WE8 A;  2CTF A;  2UUC H;  4IFD G;  4YHH H;  4LFB H;  1X4M A;  2P2R A;  3V69 A;  2CTL A;  2CWH A;  1VBI A;  2JE6 I;  4NXM H;  4NXN H;  1IBK H;  3KDG A;  1FJG H;  3QD7 X;  2UUB H;  4LFA H;  2DGR A;  2M6Q A;  4DV7 H;  2FMR A;  2K1H A;  3GAB A;  4LIJ A;  4JI7 H;  4OO1 G;  1KHM A;  5LMU H;  2G8Y A;  4KHP H;  3JAM W;  1WTJ A;  2CTJ A;  5IWA H;  1VIH A;  2OPV A;  1K1G A;  3T1H H;  2JEA I;  1WHR A;  1UG8 A;  2LTM A;  2NN6 G;  2PT7 G;  3GKU A;  1VIG A;  2CPM A;  1X9Z A;  4X62 H;  4DR4 H;  4JI8 H;  2VQF H;  2Z0S A;  4DR2 H;  2Y3M A;  2LTL A;  3KDK A;  3J7A K;  4AM3 A;  2ANN A;  4BA1 I;  2O4C A;  5JEA G;  1ODH A;  4LFC H;  4BA2 I;  1ZZI A;  1XRH A;  2OPU A;  2VKC A;  3T1Y H;  1HNZ H;  1IBM H;  2JVZ A;  1J5K A;  4DUY H;  4X65 H;  1J4W A;  4LF8 H;  4LF7 H;  1I6U A;  2HH2 A;  1X0A A;  2UXD H;  2CWF A;  1SEI A;  1DTJ A;  1J5E H;  2E5L H;  1NXU A;  2YQR A;  2UXB H;  1HR0 H;  1F0X A;  1XMO H;  3GR5 A;  4JVH A;  2CTE A;  5DT9 A;  1EC6 A;  2CTK A;  4GKJ H;  4LF5 H;  4B8C D;  3UOE A;  4PDB A;  2PY9 A;  2JA9 A;  4X66 H;  4DR1 H;  1V9N A;  3I0P A;  4YY3 H;  4JI3 H;  4JI6 H;  2LRR A;  4DV5 H;  2A1S A;  4OCH A;  1MSZ A;  4JYA H;  4B3M H;  3L7Z C;  1XNQ H;  1DT4 A;  3RF2 A;  5A2Q W;  2MJH A;  4DR3 H;  4NZR M;  2D9I A;  1FKA H;  2VQE H;  4FJU A;  5LMN H;  4DV1 H;  4B3S H;  4JI5 H;  2CTM A;  2ZM6 H;  4JV5 H;  4DR7 H;  3J80 W;  2UXC H;  4DV6 H;  4DV3 H;  2FPH X;  2ZQE A;  3OET A;  4DV4 H;  2FFM A;  1PQX A;  4EC5 A;  2UUA H;  5BR8 H;  3AEV B;  4NBQ A;  4GKK H;  1ZZK A;  1N34 H;  1V8C A;  2E3U A;  3SB1 A;  2X06 A;  2HHH H;  4H8A A;  4OX9 H;  1N36 H;  4B3T H;  1WVN A;  1HNX H;  4E9J A;  2UU9 H;  4DV2 H;  2LF0 A;  4FJS A;  4X64 H;  3NCV A;  3EZJ A;  2PQU A;  4LF6 H;  1XMQ H;  2JEB I;  4QMF B;  3J81 W;  4DR5 H;  2BL5 A;  2BA0 A;  4WAL A;  1N33 H;  2ANR A;  1ZZJ A;  4JI4 H;  1Z2I A;  2QND A;  5C0X G;  4B3R H;  4DR6 H;  4DUZ H;  1IBL H;  3OSS D;  3OTO H;  3VKE A;  1X4N A;  2CPQ A;  4G08 A;  3U1K A;  4OD6 A;  2JZX A;  3FAU A;  1TUA A;  1AN7 A;  1I94 H;  4JVY A;  4DV0 H;  4WAN A;  5K36 G;  5IT9 W;  1XNR H;  1HNW H;  4NZT M;  4LF4 H;  2HH3 A;  2M8W A;  1ZTG A;  2F4V H;  5FLX W;  4B8T A;  4LF9 H;  1S03 G;  4K0K H;  1N32 H;  4JI2 H;  4AQY H;  4AIM A;  5LL6 b;  2AXY A;  1S20 A;  4JI1 H; 
#chains in the Genus database with same CATH homology
 2CPM A;  1MSZ A;  1WHR A;  1UG8 A;  2LRR A;  3GKU A;  2A1S A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WHRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations