1ZTG | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	72
structure length	72
Chain Sequence	ILTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDIN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna, rna binding protein/dna
source organism	Homo sapiens
publication title	Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides pubmed doi rcsb
molecule keywords	POLY(RC)-BINDING PROTEIN 1
total genus	19
structure length	72
sequence length	72
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2005-05-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	1ztgA00

2HH3A 5JEAG 4JVYA 2P2RA 2QNDA 2PQUA 4JVHA 2CTJA 2MJHA 4BA2I 4OO1G 2DGRA 4NBQA 2AXYA 2CTLA 2NN6G 2FMRA 4LIJA 2JE6I 3V69A 4B8TA 2JEAI 1KHMA 4AM3A 1ZZIA 2JZXA 4QMFB 3L7ZC 3U1KA 1X4MA 1VIHA 2CPQA 4AIMA 1EC6A 3VKEA 4BA1I 2ANNA 3AEVB 2Z0SA 1DTJA 2OPUA 2CTMA 1ZTGA 2CTEA 2CTFA 1ZZKA 1TUAA 1WE8A 1VIGA 2JEBI 2YQRA 1ZZJA 1WVNA 1DT4A 2PY9A 4WANA 2JA9A 2HH2A 2JVZA 1K1GA 4WALA 1J5KA 1X4NA 4IFDG 2BL5A 2BA0A 2OPVA 5C0XG 2ANRA 2E3UA 1J4WA 5K36G 2CTKA
chains in the Genus database with same CATH superfamily

4JI7H 4DV6H 1HNZH 4NZRM 4NZTM 1XMQH 4K0KH 4KHPH 1I6UA 4X62H 2QNDA 4JVHA 4LF4H 2DGRA 4H8AA 4LIJA 5FLXW 1FJGH 4JI3H 1ZZIA 4X66H 2UUAH 1IBMH 4DR4H 3OSSD 1AN7A 1X4MA 4YHHH 2FFMA 1EC6A 4BA1I 2ANNA 1DTJA 4GKKH 3SB1A 4LF8H 2M8WA 1ZZKA 2VQEH 2E5LH 1ZZJA 2K1HA 4LFBH 3GABA 1WVNA 4NXMH 1N36H 1V9NA 2Y3MA 2PY9A 4X65H 4DR5H 4WANA 2HH2A 1N34H 1F0XA 4JI6H 4WALA 4DR1H 3GR5A 4JI2H 4GKJH 4IFDG 2BL5A 2BA0A 5C0XG 2ZM6H 3L7ZC 3FAUA 4DV5H 5DT9A 5LMUH 2PQUA 3T1HH 2UXDH 4DV2H 4JI8H 4BA2I 1S20A 1X9ZA 4FJSA 4B8CD 4DR3H 4OX9H 2JE6I 3V69A 1UG8A 4B8TA 2JZXA 4QMFB 4DV0H 2UXBH 4DV3H 5IT9W 3VKEA 2LF0A 2Z0SA 5BR8H 4B3MH 2CTMA 2UU9H 3EZJA 1NXUA 4FJUA 2VKCA 2HHHH 1WHRA 3KDKA 4LF7H 4DR2H 2A1SA 5LMNH 4NXNH 2JA9A 3J81W 4B3RH 2JVZA 1K1GA 2LTMA 1J5KA 4LF6H 5LL6b 2VQFH 2O4CA 2M6QA 4G08A 2ANRA 4PDBA 1J4WA 4EC5A 3GKUA 1I94H 1XRHA 4JVYA 2P2RA 4B3TH 2UXCH 4JI4H 3OETA 4DR7H 4DR6H 4NBQA 4OO1G 2NN6G 2FMRA 3UOEA 1KHMA 1J5EH 4YY3H 3I0PA 1V8CA 2CPQA 3T1YH 4JYAH 2CWHA 3AEVB 5IWAH 1ZTGA 1HR0H 2CTEA 2CTFA 3RF2A 1TUAA 1WE8A 2YQRA 1VIGA 1PQXA 2JEBI 4X64H 4DUYH 1IBLH 1XNRH 4LFAH 4AQYH 4JI0H 5A2QW 3QD7X 2X06A 1X4NA 4LF5H 4DV4H 1Z2IA 1N32H 1XNQH 2OPVA 2G8YA 4OD6A 2ZQEA 2E3UA 2UUCH 1WTJA 2HH3A 5JEAG 1HNWH 1N33H 2D9IA 3NCVA 1X0AA 2CWFA 4E9JA 2CTJA 1XMOH 2MJHA 4LFCH 2AXYA 2CTLA 2JEAI 4DUZH 1ODHA 4JV5H 4AM3A 4B3SH 3U1KA 1VIHA 3J80W 4AIMA 2CPMA 2LTLA 3OTOH 2OPUA 4JI5H 4DV1H 1MSZA 2UUBH 1FKAH 1IBKH 1SEIA 4DV7H 2FPHX 1DT4A 4JI1H 3J7AK 1S03G 1HNXH 4LF9H 3KDGA 4OCHA 3JAMW 1VBIA 2PT7G 2F4VH 2LRRA 5K36G 2CTKA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2HH3 A;  5JEA G;  4JVY A;  2P2R A;  2QND A;  2PQU A;  4JVH A;  2CTJ A;  2MJH A;  4BA2 I;  4OO1 G;  2DGR A;  4NBQ A;  2AXY A;  2CTL A;  2NN6 G;  2FMR A;  4LIJ A;  2JE6 I;  3V69 A;  4B8T A;  2JEA I;  1KHM A;  4AM3 A;  1ZZI A;  2JZX A;  4QMF B;  3L7Z C;  3U1K A;  1X4M A;  1VIH A;  2CPQ A;  4AIM A;  1EC6 A;  3VKE A;  4BA1 I;  2ANN A;  3AEV B;  2Z0S A;  1DTJ A;  2OPU A;  2CTM A;  1ZTG A;  2CTE A;  2CTF A;  1ZZK A;  1TUA A;  1WE8 A;  1VIG A;  2JEB I;  2YQR A;  1ZZJ A;  1WVN A;  1DT4 A;  2PY9 A;  4WAN A;  2JA9 A;  2HH2 A;  2JVZ A;  1K1G A;  4WAL A;  1J5K A;  1X4N A;  4IFD G;  2BL5 A;  2BA0 A;  2OPV A;  5C0X G;  2ANR A;  2E3U A;  1J4W A;  5K36 G;  2CTK A; 
#chains in the Genus database with same CATH topology
 4JI7 H;  4DV6 H;  1HNZ H;  4NZR M;  4NZT M;  1XMQ H;  4K0K H;  4KHP H;  1I6U A;  4X62 H;  2QND A;  4JVH A;  4LF4 H;  2DGR A;  4H8A A;  4LIJ A;  5FLX W;  1FJG H;  4JI3 H;  1ZZI A;  4X66 H;  2UUA H;  1IBM H;  4DR4 H;  3OSS D;  1AN7 A;  1X4M A;  4YHH H;  2FFM A;  1EC6 A;  4BA1 I;  2ANN A;  1DTJ A;  4GKK H;  3SB1 A;  4LF8 H;  2M8W A;  1ZZK A;  2VQE H;  2E5L H;  1ZZJ A;  2K1H A;  4LFB H;  3GAB A;  1WVN A;  4NXM H;  1N36 H;  1V9N A;  2Y3M A;  2PY9 A;  4X65 H;  4DR5 H;  4WAN A;  2HH2 A;  1N34 H;  1F0X A;  4JI6 H;  4WAL A;  4DR1 H;  3GR5 A;  4JI2 H;  4GKJ H;  4IFD G;  2BL5 A;  2BA0 A;  5C0X G;  2ZM6 H;  3L7Z C;  3FAU A;  4DV5 H;  5DT9 A;  5LMU H;  2PQU A;  3T1H H;  2UXD H;  4DV2 H;  4JI8 H;  4BA2 I;  1S20 A;  1X9Z A;  4FJS A;  4B8C D;  4DR3 H;  4OX9 H;  2JE6 I;  3V69 A;  1UG8 A;  4B8T A;  2JZX A;  4QMF B;  4DV0 H;  2UXB H;  4DV3 H;  5IT9 W;  3VKE A;  2LF0 A;  2Z0S A;  5BR8 H;  4B3M H;  2CTM A;  2UU9 H;  3EZJ A;  1NXU A;  4FJU A;  2VKC A;  2HHH H;  1WHR A;  3KDK A;  4LF7 H;  4DR2 H;  2A1S A;  5LMN H;  4NXN H;  2JA9 A;  3J81 W;  4B3R H;  2JVZ A;  1K1G A;  2LTM A;  1J5K A;  4LF6 H;  5LL6 b;  2VQF H;  2O4C A;  2M6Q A;  4G08 A;  2ANR A;  4PDB A;  1J4W A;  4EC5 A;  3GKU A;  1I94 H;  1XRH A;  4JVY A;  2P2R A;  4B3T H;  2UXC H;  4JI4 H;  3OET A;  4DR7 H;  4DR6 H;  4NBQ A;  4OO1 G;  2NN6 G;  2FMR A;  3UOE A;  1KHM A;  1J5E H;  4YY3 H;  3I0P A;  1V8C A;  2CPQ A;  3T1Y H;  4JYA H;  2CWH A;  3AEV B;  5IWA H;  1ZTG A;  1HR0 H;  2CTE A;  2CTF A;  3RF2 A;  1TUA A;  1WE8 A;  2YQR A;  1VIG A;  1PQX A;  2JEB I;  4X64 H;  4DUY H;  1IBL H;  1XNR H;  4LFA H;  4AQY H;  4JI0 H;  5A2Q W;  3QD7 X;  2X06 A;  1X4N A;  4LF5 H;  4DV4 H;  1Z2I A;  1N32 H;  1XNQ H;  2OPV A;  2G8Y A;  4OD6 A;  2ZQE A;  2E3U A;  2UUC H;  1WTJ A;  2HH3 A;  5JEA G;  1HNW H;  1N33 H;  2D9I A;  3NCV A;  1X0A A;  2CWF A;  4E9J A;  2CTJ A;  1XMO H;  2MJH A;  4LFC H;  2AXY A;  2CTL A;  2JEA I;  4DUZ H;  1ODH A;  4JV5 H;  4AM3 A;  4B3S H;  3U1K A;  1VIH A;  3J80 W;  4AIM A;  2CPM A;  2LTL A;  3OTO H;  2OPU A;  4JI5 H;  4DV1 H;  1MSZ A;  2UUB H;  1FKA H;  1IBK H;  1SEI A;  4DV7 H;  2FPH X;  1DT4 A;  4JI1 H;  3J7A K;  1S03 G;  1HNX H;  4LF9 H;  3KDG A;  4OCH A;  3JAM W;  1VBI A;  2PT7 G;  2F4V H;  2LRR A;  5K36 G;  2CTK A; 
#chains in the Genus database with same CATH homology
 2HH3 A;  5JEA G;  4JVY A;  2P2R A;  2QND A;  2PQU A;  4JVH A;  2CTJ A;  2MJH A;  4BA2 I;  4OO1 G;  2DGR A;  4NBQ A;  2AXY A;  2CTL A;  2NN6 G;  2FMR A;  4LIJ A;  2JE6 I;  3V69 A;  4B8T A;  2JEA I;  1KHM A;  4AM3 A;  1ZZI A;  2JZX A;  4QMF B;  3L7Z C;  3U1K A;  1X4M A;  1VIH A;  2CPQ A;  4AIM A;  1EC6 A;  3VKE A;  4BA1 I;  2ANN A;  3AEV B;  2Z0S A;  1DTJ A;  2OPU A;  2CTM A;  1ZTG A;  2CTE A;  2CTF A;  1ZZK A;  1TUA A;  1WE8 A;  1VIG A;  2JEB I;  2YQR A;  1ZZJ A;  1WVN A;  1DT4 A;  2PY9 A;  4WAN A;  2JA9 A;  2HH2 A;  2JVZ A;  1K1G A;  4WAL A;  1J5K A;  1X4N A;  4IFD G;  2BL5 A;  2BA0 A;  2OPV A;  5C0X G;  2ANR A;  2E3U A;  1J4W A;  5K36 G;  2CTK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1ZTGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations