1ZZI | Genus

Total Genus 20

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	82
structure length	82
Chain Sequence	GAMGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein/dna
source organism	Homo sapiens
publication title	X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids pubmed doi rcsb
molecule keywords	5'-D(CPTPCPCPCPC)-3'
total genus	20
structure length	82
sequence length	82
chains with identical sequence	B
ec nomenclature
pdb deposition date	2005-06-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	1zziA00

2Z0SA 4LIJA 5JEAG 1J5KA 2ANRA 2CTKA 2JEAI 2PY9A 3VKEA 1X4NA 2JE6I 3L7ZC 4AM3A 2CPQA 1ZTGA 4B8TA 1ZZKA 1VIHA 2AXYA 1WE8A 4BA1I 1K1GA 2E3UA 1X4MA 2BA0A 2FMRA 2YQRA 2P2RA 4JVHA 2OPVA 1KHMA 1DTJA 2JVZA 4AIMA 2JZXA 4WALA 1J4WA 2MJHA 2BL5A 4OO1G 2CTEA 1EC6A 2HH3A 2HH2A 3U1KA 4QMFB 4BA2I 4JVYA 2QNDA 2JA9A 1VIGA 2CTFA 2OPUA 2NN6G 1ZZJA 3AEVB 2DGRA 2JEBI 2PQUA 2ANNA 4NBQA 1ZZIA 3V69A 4IFDG 5K36G 1WVNA 2CTLA 2CTMA 1DT4A 4WANA 2CTJA 1TUAA 5C0XG
chains in the Genus database with same CATH superfamily

4LF8H 2ANRA 4LFAH 1VBIA 4YHHH 2M6QA 2CTKA 4FJSA 2LRRA 4JI2H 4DR1H 2JE6I 5IWAH 4X64H 1HNXH 3EZJA 1I94H 5LMUH 4DV7H 5FLXW 2AXYA 4PDBA 1WE8A 4NXMH 4OD6A 2LTMA 4DV0H 2M8WA 5IT9W 1X4MA 3SB1A 2UUAH 1KHMA 2LF0A 3OTOH 2OPVA 3GABA 4WALA 2MJHA 2Y3MA 1S03G 3J81W 4OX9H 3OETA 3KDGA 4X62H 1XNQH 4LF7H 4BA2I 4GKJH 2QNDA 1Z2IA 1UG8A 4LF6H 2NN6G 2VKCA 3FAUA 1WHRA 3RF2A 2CWHA 4NBQA 1IBMH 2PT7G 5DT9A 2ZM6H 4EC5A 2CTLA 3NCVA 1N36H 4LIJA 1WTJA 3VKEA 2PY9A 3T1HH 4LF5H 4AM3A 3OSSD 4JI4H 4B8TA 2X06A 1ZZKA 2CWFA 3I0PA 4DR6H 5LL6b 4DR4H 4BA1I 4JI3H 2E3UA 2YQRA 4GKKH 1HR0H 3UOEA 4DR5H 1EC6A 2UXBH 4KHPH 1HNZH 2HH2A 3U1KA 2VQEH 1NXUA 4JVYA 4B3MH 1FJGH 2CTFA 2OPUA 1ZZJA 3J7AK 2CPMA 1XMQH 1HNWH 2ANNA 4DUZH 2ZQEA 3GKUA 1ZZIA 4B3TH 3V69A 4LFBH 1XNRH 1V9NA 4LF4H 2CTJA 5C0XG 2FFMA 1J5KA 1N34H 2UXCH 1FKAH 2A1SA 1X4NA 1X9ZA 2CPQA 4JI1H 1ZTGA 4NZTM 1VIHA 3KDKA 4DR3H 4JI5H 4DV1H 1V8CA 5A2QW 4JYAH 2FMRA 1F0XA 4DR2H 4LF9H 4B3SH 1DTJA 2JVZA 4AIMA 4X66H 2E5LH 4NXNH 2CTEA 4JI7H 2HH3A 3QD7X 4H8AA 4QMFB 4E9JA 4NZRM 3JAMW 2K1HA 1J5EH 4X65H 4LFCH 2JEBI 4AQYH 1IBLH 3J80W 2F4VH 4IFDG 5K36G 2CTMA 4JI0H 4DV2H 1MSZA 1DT4A 4DUYH 2UUBH 4DV3H 1TUAA 1XMOH 1N33H 2Z0SA 2D9IA 5JEAG 4B3RH 2FPHX 2JEAI 1XRHA 1IBKH 3L7ZC 1N32H 3GR5A 1AN7A 4OCHA 2UXDH 4G08A 3T1YH 4FJUA 1K1GA 5LMNH 4DV5H 2BA0A 2P2RA 4DV6H 4JVHA 4WANA 4OO1G 2JZXA 1J4WA 2UU9H 2BL5A 4DR7H 4K0KH 1X0AA 2VQFH 2UUCH 4JI6H 4YY3H 2JA9A 5BR8H 1VIGA 4B8CD 3AEVB 2DGRA 2PQUA 1SEIA 1PQXA 2O4CA 4JV5H 1I6UA 1WVNA 2LTLA 2HHHH 2G8YA 1S20A 4DV4H 1ODHA 4JI8H
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2Z0S A;  4LIJ A;  5JEA G;  1J5K A;  2ANR A;  2CTK A;  2JEA I;  2PY9 A;  3VKE A;  1X4N A;  2JE6 I;  3L7Z C;  4AM3 A;  2CPQ A;  1ZTG A;  4B8T A;  1ZZK A;  1VIH A;  2AXY A;  1WE8 A;  4BA1 I;  1K1G A;  2E3U A;  1X4M A;  2BA0 A;  2FMR A;  2YQR A;  2P2R A;  4JVH A;  2OPV A;  1KHM A;  1DTJ A;  2JVZ A;  4AIM A;  2JZX A;  4WAL A;  1J4W A;  2MJH A;  2BL5 A;  4OO1 G;  2CTE A;  1EC6 A;  2HH3 A;  2HH2 A;  3U1K A;  4QMF B;  4BA2 I;  4JVY A;  2QND A;  2JA9 A;  1VIG A;  2CTF A;  2OPU A;  2NN6 G;  1ZZJ A;  3AEV B;  2DGR A;  2JEB I;  2PQU A;  2ANN A;  4NBQ A;  1ZZI A;  3V69 A;  4IFD G;  5K36 G;  1WVN A;  2CTL A;  2CTM A;  1DT4 A;  4WAN A;  2CTJ A;  1TUA A;  5C0X G; 
#chains in the Genus database with same CATH topology
 4LF8 H;  2ANR A;  4LFA H;  1VBI A;  4YHH H;  2M6Q A;  2CTK A;  4FJS A;  2LRR A;  4JI2 H;  4DR1 H;  2JE6 I;  5IWA H;  4X64 H;  1HNX H;  3EZJ A;  1I94 H;  5LMU H;  4DV7 H;  5FLX W;  2AXY A;  4PDB A;  1WE8 A;  4NXM H;  4OD6 A;  2LTM A;  4DV0 H;  2M8W A;  5IT9 W;  1X4M A;  3SB1 A;  2UUA H;  1KHM A;  2LF0 A;  3OTO H;  2OPV A;  3GAB A;  4WAL A;  2MJH A;  2Y3M A;  1S03 G;  3J81 W;  4OX9 H;  3OET A;  3KDG A;  4X62 H;  1XNQ H;  4LF7 H;  4BA2 I;  4GKJ H;  2QND A;  1Z2I A;  1UG8 A;  4LF6 H;  2NN6 G;  2VKC A;  3FAU A;  1WHR A;  3RF2 A;  2CWH A;  4NBQ A;  1IBM H;  2PT7 G;  5DT9 A;  2ZM6 H;  4EC5 A;  2CTL A;  3NCV A;  1N36 H;  4LIJ A;  1WTJ A;  3VKE A;  2PY9 A;  3T1H H;  4LF5 H;  4AM3 A;  3OSS D;  4JI4 H;  4B8T A;  2X06 A;  1ZZK A;  2CWF A;  3I0P A;  4DR6 H;  5LL6 b;  4DR4 H;  4BA1 I;  4JI3 H;  2E3U A;  2YQR A;  4GKK H;  1HR0 H;  3UOE A;  4DR5 H;  1EC6 A;  2UXB H;  4KHP H;  1HNZ H;  2HH2 A;  3U1K A;  2VQE H;  1NXU A;  4JVY A;  4B3M H;  1FJG H;  2CTF A;  2OPU A;  1ZZJ A;  3J7A K;  2CPM A;  1XMQ H;  1HNW H;  2ANN A;  4DUZ H;  2ZQE A;  3GKU A;  1ZZI A;  4B3T H;  3V69 A;  4LFB H;  1XNR H;  1V9N A;  4LF4 H;  2CTJ A;  5C0X G;  2FFM A;  1J5K A;  1N34 H;  2UXC H;  1FKA H;  2A1S A;  1X4N A;  1X9Z A;  2CPQ A;  4JI1 H;  1ZTG A;  4NZT M;  1VIH A;  3KDK A;  4DR3 H;  4JI5 H;  4DV1 H;  1V8C A;  5A2Q W;  4JYA H;  2FMR A;  1F0X A;  4DR2 H;  4LF9 H;  4B3S H;  1DTJ A;  2JVZ A;  4AIM A;  4X66 H;  2E5L H;  4NXN H;  2CTE A;  4JI7 H;  2HH3 A;  3QD7 X;  4H8A A;  4QMF B;  4E9J A;  4NZR M;  3JAM W;  2K1H A;  1J5E H;  4X65 H;  4LFC H;  2JEB I;  4AQY H;  1IBL H;  3J80 W;  2F4V H;  4IFD G;  5K36 G;  2CTM A;  4JI0 H;  4DV2 H;  1MSZ A;  1DT4 A;  4DUY H;  2UUB H;  4DV3 H;  1TUA A;  1XMO H;  1N33 H;  2Z0S A;  2D9I A;  5JEA G;  4B3R H;  2FPH X;  2JEA I;  1XRH A;  1IBK H;  3L7Z C;  1N32 H;  3GR5 A;  1AN7 A;  4OCH A;  2UXD H;  4G08 A;  3T1Y H;  4FJU A;  1K1G A;  5LMN H;  4DV5 H;  2BA0 A;  2P2R A;  4DV6 H;  4JVH A;  4WAN A;  4OO1 G;  2JZX A;  1J4W A;  2UU9 H;  2BL5 A;  4DR7 H;  4K0K H;  1X0A A;  2VQF H;  2UUC H;  4JI6 H;  4YY3 H;  2JA9 A;  5BR8 H;  1VIG A;  4B8C D;  3AEV B;  2DGR A;  2PQU A;  1SEI A;  1PQX A;  2O4C A;  4JV5 H;  1I6U A;  1WVN A;  2LTL A;  2HHH H;  2G8Y A;  1S20 A;  4DV4 H;  1ODH A;  4JI8 H; 
#chains in the Genus database with same CATH homology
 2Z0S A;  4LIJ A;  5JEA G;  1J5K A;  2ANR A;  2CTK A;  2JEA I;  2PY9 A;  3VKE A;  1X4N A;  2JE6 I;  3L7Z C;  4AM3 A;  2CPQ A;  1ZTG A;  4B8T A;  1ZZK A;  1VIH A;  2AXY A;  1WE8 A;  4BA1 I;  1K1G A;  2E3U A;  1X4M A;  2BA0 A;  2FMR A;  2YQR A;  2P2R A;  4JVH A;  2OPV A;  1KHM A;  1DTJ A;  2JVZ A;  4AIM A;  2JZX A;  4WAL A;  1J4W A;  2MJH A;  2BL5 A;  4OO1 G;  2CTE A;  1EC6 A;  2HH3 A;  2HH2 A;  3U1K A;  4QMF B;  4BA2 I;  4JVY A;  2QND A;  2JA9 A;  1VIG A;  2CTF A;  2OPU A;  2NN6 G;  1ZZJ A;  3AEV B;  2DGR A;  2JEB I;  2PQU A;  2ANN A;  4NBQ A;  1ZZI A;  3V69 A;  4IFD G;  5K36 G;  1WVN A;  2CTL A;  2CTM A;  1DT4 A;  4WAN A;  2CTJ A;  1TUA A;  5C0X G;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1ZZIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations