1ZZKA

Crystal structure of the third kh domain of hnrnp k at 0.95a resolution
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
80
structure length
80
Chain Sequence
MGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids
pubmed doi rcsb
molecule tags Dna binding protein
source organism Homo sapiens
molecule keywords Heterogeneous nuclear ribonucleoprotein K
total genus 26
structure length 80
sequence length 80
ec nomenclature
pdb deposition date 2005-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1zzkA00
2OPUA 1ZZIA 2E3UA 4BA2I 2CPQA 2JVZA 4LIJA 5JEAG 1VIGA 2NN6G 2CTLA 1X4NA 2AXYA 3VKEA 2QNDA 4B8TA 2BA0A 2BL5A 2JEBI 2PY9A 2JEAI 1KHMA 4QMFB 2JA9A 2CTJA 2HH3A 1ZZKA 1TUAA 2Z0SA 5C0XG 3U1KA 2ANNA 5K36G 3L7ZC 4IFDG 2CTKA 1WVNA 1EC6A 4WANA 1VIHA 1ZTGA 2MJHA 4JVHA 2OPVA 2PQUA 4OO1G 2JZXA 4AM3A 2JE6I 1DT4A 2CTEA 1WE8A 4JVYA 2YQRA 4AIMA 2FMRA 2HH2A 3V69A 2CTMA 1X4MA 4BA1I 4WALA 1J4WA 2ANRA 1K1GA 3AEVB 1ZZJA 2P2RA 2CTFA 4NBQA 2DGRA 1J5KA 1DTJA
chains in the Genus database with same CATH superfamily
5LL6b 1X0AA 4BA2I 5JEAG 2NN6G 2UXBH 3KDGA 1IBKH 1N32H 1HNWH 3EZJA 4OD6A 1VBIA 2UUBH 4QMFB 4B3RH 5C0XG 1ZZKA 2ANNA 4DV5H 3L7ZC 2CTKA 4JYAH 1AN7A 2VQEH 1UG8A 1EC6A 2VKCA 1VIHA 4JI0H 4JI2H 2UXDH 2A1SA 2LRRA 2OPVA 4OO1G 1I94H 4JI8H 1N34H 4AM3A 1WHRA 3OTOH 2YQRA 4LFCH 1N36H 3AEVB 1J4WA 1K1GA 2CWFA 4NXMH 2FPHX 4NBQA 2DGRA 4B8TA 2E5LH 2OPUA 2CPQA 4LIJA 3RF2A 4DR4H 1V8CA 2LF0A 4FJUA 5DT9A 3VKEA 2UU9H 1X9ZA 1ODHA 1KHMA 2JEBI 2PY9A 2JA9A 3NCVA 4E9JA 4DV3H 1TUAA 4GKKH 3QD7X 3KDKA 1I6UA 2UXCH 4LF4H 1WVNA 4DR6H 4H8AA 4JI3H 4DV2H 1XRHA 2MJHA 2FFMA 1Z2IA 4NZRM 4DR3H 1IBMH 4DR2H 3T1HH 4B3SH 2JE6I 5LMUH 1DT4A 3T1YH 4GKJH 4JI5H 2HH2A 4OCHA 4BA1I 4WALA 3GABA 2ZM6H 4LF8H 4LFBH 1ZZJA 1S03G 1MSZA 4DV6H 1J5KA 4LF5H 4B3TH 4G08A 2PT7G 2E3UA 4KHPH 1VIGA 2CTLA 4K0KH 1X4NA 4DR1H 2AXYA 2BA0A 4AQYH 3GR5A 4JI1H 4LF6H 2CTJA 2HH3A 5IT9W 2Z0SA 2F4VH 5K36G 3U1KA 1XNQH 4EC5A 4JI4H 4IFDG 5LMNH 2LTMA 4DR5H 3GKUA 2JZXA 4DUZH 4X62H 1WE8A 4JVYA 1HR0H 2FMRA 4JI7H 4JV5H 2CTMA 2G8YA 2ANRA 1NXUA 5A2QW 1F0XA 5IWAH 4YHHH 1HNZH 4DR7H 1ZZIA 4B8CD 2JVZA 1N33H 4DUYH 4PDBA 2D9IA 2O4CA 2M6QA 2QNDA 3OETA 1IBLH 4B3MH 3OSSD 4OX9H 2UUCH 2BL5A 3UOEA 4DV1H 4FJSA 4X66H 2JEAI 1XMOH 4X64H 1FKAH 1SEIA 3J7AK 1S20A 3J80W 3SB1A 2Y3MA 5BR8H 4YY3H 2M8WA 4LF7H 4X65H 4LF9H 3J81W 4WANA 2K1HA 4DV0H 4DV7H 1ZTGA 2HHHH 2VQFH 2LTLA 1HNXH 1PQXA 2PQUA 1V9NA 2UUAH 4JVHA 2X06A 4LFAH 1XMQH 1J5EH 2CTEA 5FLXW 3JAMW 4JI6H 3I0PA 4AIMA 3V69A 2CPMA 1X4MA 4NZTM 1FJGH 3FAUA 4NXNH 4DV4H 2ZQEA 2P2RA 2CTFA 1XNRH 1WTJA 2CWHA 1DTJA
chains in the Genus database with same CATH topology
2OPUA 1ZZIA 2E3UA 4BA2I 2CPQA 2JVZA 4LIJA 5JEAG 1VIGA 2NN6G 2CTLA 1X4NA 2AXYA 3VKEA 2QNDA 4B8TA 2BA0A 2BL5A 2JEBI 2PY9A 2JEAI 1KHMA 4QMFB 2JA9A 2CTJA 2HH3A 1ZZKA 1TUAA 2Z0SA 5C0XG 3U1KA 2ANNA 5K36G 3L7ZC 4IFDG 2CTKA 1WVNA 1EC6A 4WANA 1VIHA 1ZTGA 2MJHA 4JVHA 2OPVA 2PQUA 4OO1G 2JZXA 4AM3A 2JE6I 1DT4A 2CTEA 1WE8A 4JVYA 2YQRA 4AIMA 2FMRA 2HH2A 3V69A 2CTMA 1X4MA 4BA1I 4WALA 1J4WA 2ANRA 1K1GA 3AEVB 1ZZJA 2P2RA 2CTFA 4NBQA 2DGRA 1J5KA 1DTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OPU A;  1ZZI A;  2E3U A;  4BA2 I;  2CPQ A;  2JVZ A;  4LIJ A;  5JEA G;  1VIG A;  2NN6 G;  2CTL A;  1X4N A;  2AXY A;  3VKE A;  2QND A;  4B8T A;  2BA0 A;  2BL5 A;  2JEB I;  2PY9 A;  2JEA I;  1KHM A;  4QMF B;  2JA9 A;  2CTJ A;  2HH3 A;  1ZZK A;  1TUA A;  2Z0S A;  5C0X G;  3U1K A;  2ANN A;  5K36 G;  3L7Z C;  4IFD G;  2CTK A;  1WVN A;  1EC6 A;  4WAN A;  1VIH A;  1ZTG A;  2MJH A;  4JVH A;  2OPV A;  2PQU A;  4OO1 G;  2JZX A;  4AM3 A;  2JE6 I;  1DT4 A;  2CTE A;  1WE8 A;  4JVY A;  2YQR A;  4AIM A;  2FMR A;  2HH2 A;  3V69 A;  2CTM A;  1X4M A;  4BA1 I;  4WAL A;  1J4W A;  2ANR A;  1K1G A;  3AEV B;  1ZZJ A;  2P2R A;  2CTF A;  4NBQ A;  2DGR A;  1J5K A;  1DTJ A; 
#chains in the Genus database with same CATH topology
 5LL6 b;  1X0A A;  4BA2 I;  5JEA G;  2NN6 G;  2UXB H;  3KDG A;  1IBK H;  1N32 H;  1HNW H;  3EZJ A;  4OD6 A;  1VBI A;  2UUB H;  4QMF B;  4B3R H;  5C0X G;  1ZZK A;  2ANN A;  4DV5 H;  3L7Z C;  2CTK A;  4JYA H;  1AN7 A;  2VQE H;  1UG8 A;  1EC6 A;  2VKC A;  1VIH A;  4JI0 H;  4JI2 H;  2UXD H;  2A1S A;  2LRR A;  2OPV A;  4OO1 G;  1I94 H;  4JI8 H;  1N34 H;  4AM3 A;  1WHR A;  3OTO H;  2YQR A;  4LFC H;  1N36 H;  3AEV B;  1J4W A;  1K1G A;  2CWF A;  4NXM H;  2FPH X;  4NBQ A;  2DGR A;  4B8T A;  2E5L H;  2OPU A;  2CPQ A;  4LIJ A;  3RF2 A;  4DR4 H;  1V8C A;  2LF0 A;  4FJU A;  5DT9 A;  3VKE A;  2UU9 H;  1X9Z A;  1ODH A;  1KHM A;  2JEB I;  2PY9 A;  2JA9 A;  3NCV A;  4E9J A;  4DV3 H;  1TUA A;  4GKK H;  3QD7 X;  3KDK A;  1I6U A;  2UXC H;  4LF4 H;  1WVN A;  4DR6 H;  4H8A A;  4JI3 H;  4DV2 H;  1XRH A;  2MJH A;  2FFM A;  1Z2I A;  4NZR M;  4DR3 H;  1IBM H;  4DR2 H;  3T1H H;  4B3S H;  2JE6 I;  5LMU H;  1DT4 A;  3T1Y H;  4GKJ H;  4JI5 H;  2HH2 A;  4OCH A;  4BA1 I;  4WAL A;  3GAB A;  2ZM6 H;  4LF8 H;  4LFB H;  1ZZJ A;  1S03 G;  1MSZ A;  4DV6 H;  1J5K A;  4LF5 H;  4B3T H;  4G08 A;  2PT7 G;  2E3U A;  4KHP H;  1VIG A;  2CTL A;  4K0K H;  1X4N A;  4DR1 H;  2AXY A;  2BA0 A;  4AQY H;  3GR5 A;  4JI1 H;  4LF6 H;  2CTJ A;  2HH3 A;  5IT9 W;  2Z0S A;  2F4V H;  5K36 G;  3U1K A;  1XNQ H;  4EC5 A;  4JI4 H;  4IFD G;  5LMN H;  2LTM A;  4DR5 H;  3GKU A;  2JZX A;  4DUZ H;  4X62 H;  1WE8 A;  4JVY A;  1HR0 H;  2FMR A;  4JI7 H;  4JV5 H;  2CTM A;  2G8Y A;  2ANR A;  1NXU A;  5A2Q W;  1F0X A;  5IWA H;  4YHH H;  1HNZ H;  4DR7 H;  1ZZI A;  4B8C D;  2JVZ A;  1N33 H;  4DUY H;  4PDB A;  2D9I A;  2O4C A;  2M6Q A;  2QND A;  3OET A;  1IBL H;  4B3M H;  3OSS D;  4OX9 H;  2UUC H;  2BL5 A;  3UOE A;  4DV1 H;  4FJS A;  4X66 H;  2JEA I;  1XMO H;  4X64 H;  1FKA H;  1SEI A;  3J7A K;  1S20 A;  3J80 W;  3SB1 A;  2Y3M A;  5BR8 H;  4YY3 H;  2M8W A;  4LF7 H;  4X65 H;  4LF9 H;  3J81 W;  4WAN A;  2K1H A;  4DV0 H;  4DV7 H;  1ZTG A;  2HHH H;  2VQF H;  2LTL A;  1HNX H;  1PQX A;  2PQU A;  1V9N A;  2UUA H;  4JVH A;  2X06 A;  4LFA H;  1XMQ H;  1J5E H;  2CTE A;  5FLX W;  3JAM W;  4JI6 H;  3I0P A;  4AIM A;  3V69 A;  2CPM A;  1X4M A;  4NZT M;  1FJG H;  3FAU A;  4NXN H;  4DV4 H;  2ZQE A;  2P2R A;  2CTF A;  1XNR H;  1WTJ A;  2CWH A;  1DTJ A; 
#chains in the Genus database with same CATH homology
 2OPU A;  1ZZI A;  2E3U A;  4BA2 I;  2CPQ A;  2JVZ A;  4LIJ A;  5JEA G;  1VIG A;  2NN6 G;  2CTL A;  1X4N A;  2AXY A;  3VKE A;  2QND A;  4B8T A;  2BA0 A;  2BL5 A;  2JEB I;  2PY9 A;  2JEA I;  1KHM A;  4QMF B;  2JA9 A;  2CTJ A;  2HH3 A;  1ZZK A;  1TUA A;  2Z0S A;  5C0X G;  3U1K A;  2ANN A;  5K36 G;  3L7Z C;  4IFD G;  2CTK A;  1WVN A;  1EC6 A;  4WAN A;  1VIH A;  1ZTG A;  2MJH A;  4JVH A;  2OPV A;  2PQU A;  4OO1 G;  2JZX A;  4AM3 A;  2JE6 I;  1DT4 A;  2CTE A;  1WE8 A;  4JVY A;  2YQR A;  4AIM A;  2FMR A;  2HH2 A;  3V69 A;  2CTM A;  1X4M A;  4BA1 I;  4WAL A;  1J4W A;  2ANR A;  1K1G A;  3AEV B;  1ZZJ A;  2P2R A;  2CTF A;  4NBQ A;  2DGR A;  1J5K A;  1DTJ A; 
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similar chains in the pdb database (?% sequence similarity)

 
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