1ZZK | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	80
structure length	80
Chain Sequence	MGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Homo sapiens
publication title	X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids pubmed doi rcsb
molecule keywords	Heterogeneous nuclear ribonucleoprotein K
total genus	26
structure length	80
sequence length	80
ec nomenclature
pdb deposition date	2005-06-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	1zzkA00

2CTFA 2ANNA 1X4MA 4AM3A 1ZTGA 4JVYA 1WVNA 1KHMA 1ZZKA 1ZZIA 1K1GA 1VIHA 4OO1G 2CTEA 2HH3A 4WALA 1DT4A 2CTMA 1TUAA 4BA1I 2CTLA 2P2RA 2PY9A 2BL5A 2ANRA 2FMRA 2CTKA 1DTJA 2YQRA 2MJHA 2JA9A 2HH2A 4QMFB 4WANA 4JVHA 2JVZA 4LIJA 4IFDG 3U1KA 1WE8A 1VIGA 4NBQA 2OPVA 5JEAG 2AXYA 5C0XG 2NN6G 4AIMA 3VKEA 3AEVB 2Z0SA 4BA2I 2BA0A 2DGRA 4B8TA 1X4NA 2PQUA 5K36G 2CPQA 2CTJA 2OPUA 3L7ZC 1J4WA 2JEAI 2QNDA 3V69A 2E3UA 2JE6I 2JZXA 1EC6A 1ZZJA 2JEBI 1J5KA
chains in the Genus database with same CATH superfamily

4NXMH 2ANNA 2LRRA 3T1HH 3KDKA 4JVYA 1KHMA 1WHRA 1ZZKA 3EZJA 3J7AK 2M8WA 4WALA 1DT4A 1TUAA 4DUYH 2CTLA 4FJUA 1XMQH 1NXUA 2P2RA 4LFAH 4DR4H 1N32H 4GKJH 4K0KH 4X65H 2YQRA 1XMOH 2JA9A 2HH2A 4JI5H 3RF2A 5FLXW 4LIJA 3UOEA 2A1SA 4NZTM 2ZQEA 2K1HA 2LF0A 4JI2H 4DV3H 5JEAG 2UXBH 5C0XG 2NN6G 4AIMA 1S03G 2BA0A 1XNRH 1MSZA 4B8TA 2VQFH 1AN7A 5K36G 3GKUA 2LTMA 4DV5H 2ZM6H 4NXNH 4OD6A 1EC6A 4X66H 2JZXA 3GABA 2UU9H 4B3MH 4AM3A 4JV5H 4LF8H 1WVNA 1ZZIA 4OO1G 2CTEA 2UUCH 1PQXA 1I6UA 2CTMA 4LF4H 2UUAH 4X62H 4DV0H 2G8YA 4E9JA 1V9NA 2FMRA 3I0PA 4JI8H 4B3SH 2FFMA 1F0XA 4QMFB 4WANA 5IT9W 4DV2H 1HR0H 2UXDH 2Y3MA 2F4VH 4DR5H 1VIGA 3FAUA 1IBLH 4JI0H 2AXYA 1FJGH 1VBIA 3AEVB 1UG8A 4JI1H 4BA2I 4LFCH 4OCHA 5LMUH 4JI6H 1X4NA 1IBKH 2O4CA 2CPQA 3J81W 4DV7H 2LTLA 1S20A 1HNWH 4LF6H 1ZZJA 1N36H 1J5KA 2CTFA 1XRHA 1X4MA 2CWFA 1ZTGA 4B8CD 4B3TH 2FPHX 1K1GA 5DT9A 4BA1I 1HNZH 1N33H 4G08A 2UUBH 4JI7H 4DR1H 2D9IA 4DR7H 2BL5A 3NCVA 4KHPH 5A2QW 2HHHH 2CTKA 2MJHA 2CPMA 4JI4H 3OTOH 2JVZA 1FKAH 4JYAH 1V8CA 3SB1A 4LFBH 1SEIA 1WE8A 4NBQA 4AQYH 2VKCA 3VKEA 2Z0SA 2X06A 4LF5H 4H8AA 2DGRA 5LMNH 2UXCH 2PQUA 3L7ZC 2JEAI 4NZRM 4DR6H 3V69A 4EC5A 2E3UA 1Z2IA 2JE6I 3KDGA 1J5EH 2E5LH 1XNQH 4B3RH 4JI3H 1VIHA 2HH3A 4X64H 1IBMH 4YY3H 3QD7X 5LL6b 4DV6H 4DUZH 4DR2H 1ODHA 2ANRA 2PY9A 4PDBA 1HNXH 3OETA 4YHHH 1DTJA 2VQEH 3OSSD 5IWAH 4DR3H 4DV1H 4OX9H 4FJSA 4JVHA 3J80W 4IFDG 3U1KA 2OPVA 2PT7G 3T1YH 2M6QA 3GR5A 1I94H 4LF9H 4LF7H 4GKKH 3JAMW 1WTJA 2CTJA 2OPUA 1J4WA 2QNDA 4DV4H 1N34H 1X0AA 2CWHA 2JEBI 5BR8H 1X9ZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2CTF A;  2ANN A;  1X4M A;  4AM3 A;  1ZTG A;  4JVY A;  1WVN A;  1KHM A;  1ZZK A;  1ZZI A;  1K1G A;  1VIH A;  4OO1 G;  2CTE A;  2HH3 A;  4WAL A;  1DT4 A;  2CTM A;  1TUA A;  4BA1 I;  2CTL A;  2P2R A;  2PY9 A;  2BL5 A;  2ANR A;  2FMR A;  2CTK A;  1DTJ A;  2YQR A;  2MJH A;  2JA9 A;  2HH2 A;  4QMF B;  4WAN A;  4JVH A;  2JVZ A;  4LIJ A;  4IFD G;  3U1K A;  1WE8 A;  1VIG A;  4NBQ A;  2OPV A;  5JEA G;  2AXY A;  5C0X G;  2NN6 G;  4AIM A;  3VKE A;  3AEV B;  2Z0S A;  4BA2 I;  2BA0 A;  2DGR A;  4B8T A;  1X4N A;  2PQU A;  5K36 G;  2CPQ A;  2CTJ A;  2OPU A;  3L7Z C;  1J4W A;  2JEA I;  2QND A;  3V69 A;  2E3U A;  2JE6 I;  2JZX A;  1EC6 A;  1ZZJ A;  2JEB I;  1J5K A; 
#chains in the Genus database with same CATH topology
 4NXM H;  2ANN A;  2LRR A;  3T1H H;  3KDK A;  4JVY A;  1KHM A;  1WHR A;  1ZZK A;  3EZJ A;  3J7A K;  2M8W A;  4WAL A;  1DT4 A;  1TUA A;  4DUY H;  2CTL A;  4FJU A;  1XMQ H;  1NXU A;  2P2R A;  4LFA H;  4DR4 H;  1N32 H;  4GKJ H;  4K0K H;  4X65 H;  2YQR A;  1XMO H;  2JA9 A;  2HH2 A;  4JI5 H;  3RF2 A;  5FLX W;  4LIJ A;  3UOE A;  2A1S A;  4NZT M;  2ZQE A;  2K1H A;  2LF0 A;  4JI2 H;  4DV3 H;  5JEA G;  2UXB H;  5C0X G;  2NN6 G;  4AIM A;  1S03 G;  2BA0 A;  1XNR H;  1MSZ A;  4B8T A;  2VQF H;  1AN7 A;  5K36 G;  3GKU A;  2LTM A;  4DV5 H;  2ZM6 H;  4NXN H;  4OD6 A;  1EC6 A;  4X66 H;  2JZX A;  3GAB A;  2UU9 H;  4B3M H;  4AM3 A;  4JV5 H;  4LF8 H;  1WVN A;  1ZZI A;  4OO1 G;  2CTE A;  2UUC H;  1PQX A;  1I6U A;  2CTM A;  4LF4 H;  2UUA H;  4X62 H;  4DV0 H;  2G8Y A;  4E9J A;  1V9N A;  2FMR A;  3I0P A;  4JI8 H;  4B3S H;  2FFM A;  1F0X A;  4QMF B;  4WAN A;  5IT9 W;  4DV2 H;  1HR0 H;  2UXD H;  2Y3M A;  2F4V H;  4DR5 H;  1VIG A;  3FAU A;  1IBL H;  4JI0 H;  2AXY A;  1FJG H;  1VBI A;  3AEV B;  1UG8 A;  4JI1 H;  4BA2 I;  4LFC H;  4OCH A;  5LMU H;  4JI6 H;  1X4N A;  1IBK H;  2O4C A;  2CPQ A;  3J81 W;  4DV7 H;  2LTL A;  1S20 A;  1HNW H;  4LF6 H;  1ZZJ A;  1N36 H;  1J5K A;  2CTF A;  1XRH A;  1X4M A;  2CWF A;  1ZTG A;  4B8C D;  4B3T H;  2FPH X;  1K1G A;  5DT9 A;  4BA1 I;  1HNZ H;  1N33 H;  4G08 A;  2UUB H;  4JI7 H;  4DR1 H;  2D9I A;  4DR7 H;  2BL5 A;  3NCV A;  4KHP H;  5A2Q W;  2HHH H;  2CTK A;  2MJH A;  2CPM A;  4JI4 H;  3OTO H;  2JVZ A;  1FKA H;  4JYA H;  1V8C A;  3SB1 A;  4LFB H;  1SEI A;  1WE8 A;  4NBQ A;  4AQY H;  2VKC A;  3VKE A;  2Z0S A;  2X06 A;  4LF5 H;  4H8A A;  2DGR A;  5LMN H;  2UXC H;  2PQU A;  3L7Z C;  2JEA I;  4NZR M;  4DR6 H;  3V69 A;  4EC5 A;  2E3U A;  1Z2I A;  2JE6 I;  3KDG A;  1J5E H;  2E5L H;  1XNQ H;  4B3R H;  4JI3 H;  1VIH A;  2HH3 A;  4X64 H;  1IBM H;  4YY3 H;  3QD7 X;  5LL6 b;  4DV6 H;  4DUZ H;  4DR2 H;  1ODH A;  2ANR A;  2PY9 A;  4PDB A;  1HNX H;  3OET A;  4YHH H;  1DTJ A;  2VQE H;  3OSS D;  5IWA H;  4DR3 H;  4DV1 H;  4OX9 H;  4FJS A;  4JVH A;  3J80 W;  4IFD G;  3U1K A;  2OPV A;  2PT7 G;  3T1Y H;  2M6Q A;  3GR5 A;  1I94 H;  4LF9 H;  4LF7 H;  4GKK H;  3JAM W;  1WTJ A;  2CTJ A;  2OPU A;  1J4W A;  2QND A;  4DV4 H;  1N34 H;  1X0A A;  2CWH A;  2JEB I;  5BR8 H;  1X9Z A; 
#chains in the Genus database with same CATH homology
 2CTF A;  2ANN A;  1X4M A;  4AM3 A;  1ZTG A;  4JVY A;  1WVN A;  1KHM A;  1ZZK A;  1ZZI A;  1K1G A;  1VIH A;  4OO1 G;  2CTE A;  2HH3 A;  4WAL A;  1DT4 A;  2CTM A;  1TUA A;  4BA1 I;  2CTL A;  2P2R A;  2PY9 A;  2BL5 A;  2ANR A;  2FMR A;  2CTK A;  1DTJ A;  2YQR A;  2MJH A;  2JA9 A;  2HH2 A;  4QMF B;  4WAN A;  4JVH A;  2JVZ A;  4LIJ A;  4IFD G;  3U1K A;  1WE8 A;  1VIG A;  4NBQ A;  2OPV A;  5JEA G;  2AXY A;  5C0X G;  2NN6 G;  4AIM A;  3VKE A;  3AEV B;  2Z0S A;  4BA2 I;  2BA0 A;  2DGR A;  4B8T A;  1X4N A;  2PQU A;  5K36 G;  2CPQ A;  2CTJ A;  2OPU A;  3L7Z C;  1J4W A;  2JEA I;  2QND A;  3V69 A;  2E3U A;  2JE6 I;  2JZX A;  1EC6 A;  1ZZJ A;  2JEB I;  1J5K A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1ZZKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations