The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
99
|
sequence length |
360
|
structure length |
348
|
Chain Sequence |
MFEKGYVDENYIRVPKDRLFSFIVRVLTKLGVPEEDAKIVADNLVMADLRGVESHGVQRLKRYVDGIISGGVNLHPKIRVIREGPSYALIDGDEGLGQVVGYRSMKLAIKKAKDTGIGIVIARNSNHYGIAGYYALMAAEEGMIGISMTNSRPLVAPTGGIERILGTNPIALAAPTKDKPFLLDMATSVVPIGKLEWAINREGNITTKVEEVFNGGALLPLGGFGELLGGHKGYGLSLMVDILSGILSGGTWSKYVKNTSEKGSNVCHFFMVIDIEHFIPLEEFKEKISQMIEEIKSSRKHPEFERIWIHGEKGFLTMETRLKLGIPIYRKVLEELNEIAKRVGVEGL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of Malate Dehydrogenase from Pyrococcus horikoshii OT3
rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Pyrococcus horikoshii
|
| molecule keywords |
Malate dehydrogenase
|
| total genus |
99
|
| structure length |
348
|
| sequence length |
360
|
| ec nomenclature |
ec
1.1.1.37: Malate dehydrogenase. |
| pdb deposition date | 2004-01-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02615 | Ldh_2 | Malate/L-lactate dehydrogenase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 | Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Hypothetical oxidoreductase yiak; domain 2 |
#chains in the Genus database with same CATH superfamily 4H8A A; 1VBI A; 2G8Y A; 1NXU A; 2X06 A; 1X0A A; 4FJS A; 3I0P A; 1XRH A; 4FJU A; 3UOE A; 2CWH A; 1Z2I A; 2CWF A; 1WTJ A; 1S20 A; 1V9N A; #chains in the Genus database with same CATH topology 4DR4 H; 5IWA H; 1X4M A; 2PQU A; 3L7Z C; 1F0X A; 4B3M H; 4IFD G; 3EZJ A; 1HNZ H; 1ZZJ A; 2UXC H; 3NCV A; 3U1K A; 4LF6 H; 4LFC H; 4JI0 H; 1V8C A; 5DT9 A; 5FLX W; 2CPQ A; 4JI8 H; 4DV7 H; 1XNQ H; 2JEA I; 2JZX A; 3I0P A; 2QND A; 1HR0 H; 1IBM H; 2CWF A; 5C0X G; 1WHR A; 4LFA H; 2CPM A; 4G08 A; 2ANR A; 1IBL H; 2HHH H; 2FMR A; 3SB1 A; 4NXM H; 4BA1 I; 2Y3M A; 3QD7 X; 1J5E H; 4LF4 H; 1N34 H; 1VIH A; 2LTM A; 1WE8 A; 1XMO H; 1X4N A; 1X0A A; 5A2Q W; 4DV5 H; 4JI7 H; 4B8T A; 4DV2 H; 2CTL A; 4JI4 H; 2NN6 G; 1WTJ A; 1N33 H; 5IT9 W; 5LMN H; 1KHM A; 2M8W A; 4KHP H; 4JI2 H; 2VKC A; 2FFM A; 2JE6 I; 1VIG A; 1X9Z A; 2UUB H; 5BR8 H; 2Z0S A; 4DR6 H; 3AEV B; 4DR2 H; 2ZM6 H; 2OPU A; 2VQF H; 4DUY H; 4LF7 H; 4K0K H; 4BA2 I; 3UOE A; 2HH3 A; 3V69 A; 4X65 H; 1VBI A; 2OPV A; 1J4W A; 4OD6 A; 2VQE H; 2PY9 A; 2LTL A; 2UXD H; 4FJS A; 1UG8 A; 4DV3 H; 2YQR A; 1IBK H; 2UUC H; 4OX9 H; 4GKK H; 1PQX A; 2G8Y A; 4DR5 H; 1EC6 A; 1FKA H; 3GKU A; 4LIJ A; 3T1H H; 2DGR A; 4DV6 H; 2JA9 A; 1N36 H; 4AIM A; 1AN7 A; 3GR5 A; 4X66 H; 4LFB H; 2UXB H; 1S03 G; 2X06 A; 4LF5 H; 1DTJ A; 2CTE A; 2HH2 A; 1ZTG A; 4B8C D; 1HNX H; 1XNR H; 2F4V H; 5JEA G; 4JI3 H; 4JYA H; 2CTJ A; 1XRH A; 4FJU A; 1ZZI A; 2CTK A; 4NBQ A; 2CTF A; 3GAB A; 4EC5 A; 2O4C A; 3J80 W; 2A1S A; 1I6U A; 2K1H A; 4X64 H; 3KDG A; 1I94 H; 4H8A A; 2JEB I; 4NZT M; 4DV4 H; 4NXN H; 3KDK A; 2CTM A; 2FPH X; 2JVZ A; 3FAU A; 4DUZ H; 4NZR M; 4X62 H; 2AXY A; 1N32 H; 3J81 W; 1J5K A; 3RF2 A; 4JVH A; 4B3S H; 1SEI A; 3J7A K; 1HNW H; 4QMF B; 1XMQ H; 3OET A; 1S20 A; 4YY3 H; 4JI5 H; 4GKJ H; 4JI1 H; 4DV0 H; 1ZZK A; 2ZQE A; 3OSS D; 3T1Y H; 3OTO H; 4DR7 H; 2E5L H; 2BA0 A; 1K1G A; 2BL5 A; 4AM3 A; 4PDB A; 1MSZ A; 4JVY A; 2D9I A; 5LL6 b; 4JV5 H; 2ANN A; 4JI6 H; 4WAL A; 4LF8 H; 1WVN A; 4DR1 H; 4B3R H; 4LF9 H; 1DT4 A; 2E3U A; 2UUA H; 4OCH A; 4YHH H; 2M6Q A; 4OO1 G; 3JAM W; 2P2R A; 2CWH A; 1ODH A; 4DR3 H; 2PT7 G; 4E9J A; 4DV1 H; 1NXU A; 2LF0 A; 5K36 G; 4B3T H; 5LMU H; 1TUA A; 1FJG H; 4WAN A; 2LRR A; 3VKE A; 4AQY H; 2UU9 H; 2MJH A; 1Z2I A; 1V9N A; #chains in the Genus database with same CATH homology 4H8A A; 1VBI A; 2G8Y A; 1NXU A; 2X06 A; 1X0A A; 4FJS A; 3I0P A; 1XRH A; 4FJU A; 3UOE A; 2CWH A; 1Z2I A; 2CWF A; 1WTJ A; 1S20 A; 1V9N A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
