2ANR | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	176
structure length	155
Chain Sequence	GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPLQNRVVTVSGEPEQNRKAVELIIQKIQEDPQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rna-binding protein/rna
source organism	Homo sapiens
publication title	Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. pubmed doi rcsb
molecule keywords	5'-R(CP(5BU)PCPGPCPGPGPAPUPCPAPGPUPCPAPCP*CP
total genus	43
structure length	155
sequence length	176
ec nomenclature
pdb deposition date	2005-08-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	2anrA01
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	2anrA02

1WVNA 4BA1I 4WALA 3VKEA 2E3UA 4JVYA 2JEBI 2JVZA 1J5KA 1ZZKA 4LIJA 4QMFB 5JEAG 2PY9A 2P2RA 2PQUA 2FMRA 3V69A 4B8TA 2AXYA 3AEVB 3L7ZC 2ANRA 1VIGA 2CTFA 2JA9A 1VIHA 1J4WA 2OPUA 1ZZIA 2BA0A 4OO1G 1EC6A 2CTKA 1X4NA 1DTJA 1TUAA 4WANA 4NBQA 4BA2I 5K36G 1WE8A 2JZXA 2JEAI 4IFDG 2NN6G 2JE6I 4JVHA 2CPQA 1X4MA 2CTJA 2OPVA 1ZZJA 2BL5A 1K1GA 2DGRA 1DT4A 2HH2A 2Z0SA 2MJHA 2ANNA 4AM3A 5C0XG 1ZTGA 2QNDA 2CTEA 2CTMA 1KHMA 3U1KA 2HH3A 2YQRA 4AIMA 2CTLA
chains in the Genus database with same CATH superfamily

4NXNH 4LFAH 4DV1H 2PT7G 4NZRM 2ZM6H 4JVYA 2JEBI 4KHPH 5DT9A 4JI6H 2UUAH 3V69A 4K0KH 5A2QW 4DR5H 2M6QA 4DUYH 4H8AA 2ANRA 4OX9H 2CTFA 4B3RH 1WTJA 1J4WA 1N36H 2UXBH 4OO1G 1X0AA 1DTJA 4WANA 4NBQA 1XMQH 2UUCH 4LF9H 4GKKH 1S03G 4JI8H 4IFDG 1XNRH 1HNWH 1UG8A 1ZZJA 2LF0A 5IT9W 1IBKH 1PQXA 3NCVA 3UOEA 1MSZA 1FKAH 4DR7H 3GKUA 1IBLH 4LF7H 3U1KA 2VKCA 2CTEA 2BA0A 4B8CD 4WALA 2F4VH 4NXMH 4DV3H 2JVZA 1ODHA 1IBMH 1S20A 4LIJA 4QMFB 4DR4H 5JEAG 2PY9A 4DR3H 4JI3H 4YHHH 3AEVB 2CWFA 3L7ZC 2LRRA 1VIHA 3OTOH 2UUBH 4JI0H 1EC6A 3RF2A 4E9JA 3QD7X 4BA2I 4X64H 1WE8A 4B3MH 2JZXA 3SB1A 2UU9H 4LF5H 2NN6G 2UXCH 2CWHA 2CTJA 4JYAH 4YY3H 2OPVA 4DV7H 2BL5A 2G8YA 3GABA 2M8WA 2ANNA 1XNQH 2UXDH 1KHMA 2CTMA 2E5LH 1FJGH 1XMOH 2A1SA 2Y3MA 3KDGA 2CTLA 3J7AK 2E3UA 2LTMA 1X9ZA 4JI1H 5LMNH 1NXUA 1J5KA 1ZZKA 4EC5A 4DV0H 2P2RA 3T1YH 2FMRA 2AXYA 4B8TA 3I0PA 4JI5H 4DUZH 2VQFH 3JAMW 1N34H 1V8CA 1XRHA 2O4CA 4X65H 2OPUA 2X06A 4FJUA 4DR1H 4PDBA 2CTKA 4AQYH 1X4NA 4JV5H 1F0XA 5K36G 2FFMA 2JEAI 2JE6I 4LFBH 2K1HA 4NZTM 5BR8H 2D9IA 2ZQEA 2DGRA 3FAUA 1DT4A 2HH2A 4AM3A 3KDKA 1AN7A 5C0XG 1HNXH 1N33H 2QNDA 5LL6b 2FPHX 4B3SH 4DV6H 3T1HH 1HNZH 4X62H 1N32H 2JA9A 2HH3A 3VKEA 1ZZIA 4DV2H 2HHHH 1WVNA 3EZJA 4BA1I 4LFCH 3OSSD 4DV5H 3J80W 4LF4H 1I94H 1SEIA 2PQUA 4GKJH 3J81W 1VIGA 4OCHA 1I6UA 5LMUH 4DV4H 3GR5A 5IWAH 5FLXW 2LTLA 1TUAA 4X66H 2VQEH 4B3TH 4JVHA 2CPQA 1X4MA 1J5EH 4FJSA 1K1GA 1WHRA 4JI2H 1Z2IA 4OD6A 4LF8H 2MJHA 2Z0SA 4JI7H 2CPMA 4LF6H 4DR6H 1V9NA 4JI4H 3OETA 1ZTGA 1HR0H 4DR2H 1VBIA 2YQRA 4AIMA 4G08A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1WVN A;  4BA1 I;  4WAL A;  3VKE A;  2E3U A;  4JVY A;  2JEB I;  2JVZ A;  1J5K A;  1ZZK A;  4LIJ A;  4QMF B;  5JEA G;  2PY9 A;  2P2R A;  2PQU A;  2FMR A;  3V69 A;  4B8T A;  2AXY A;  3AEV B;  3L7Z C;  2ANR A;  1VIG A;  2CTF A;  2JA9 A;  1VIH A;  1J4W A;  2OPU A;  1ZZI A;  2BA0 A;  4OO1 G;  1EC6 A;  2CTK A;  1X4N A;  1DTJ A;  1TUA A;  4WAN A;  4NBQ A;  4BA2 I;  5K36 G;  1WE8 A;  2JZX A;  2JEA I;  4IFD G;  2NN6 G;  2JE6 I;  4JVH A;  2CPQ A;  1X4M A;  2CTJ A;  2OPV A;  1ZZJ A;  2BL5 A;  1K1G A;  2DGR A;  1DT4 A;  2HH2 A;  2Z0S A;  2MJH A;  2ANN A;  4AM3 A;  5C0X G;  1ZTG A;  2QND A;  2CTE A;  2CTM A;  1KHM A;  3U1K A;  2HH3 A;  2YQR A;  4AIM A;  2CTL A; 
#chains in the Genus database with same CATH topology
 4NXN H;  4LFA H;  4DV1 H;  2PT7 G;  4NZR M;  2ZM6 H;  4JVY A;  2JEB I;  4KHP H;  5DT9 A;  4JI6 H;  2UUA H;  3V69 A;  4K0K H;  5A2Q W;  4DR5 H;  2M6Q A;  4DUY H;  4H8A A;  2ANR A;  4OX9 H;  2CTF A;  4B3R H;  1WTJ A;  1J4W A;  1N36 H;  2UXB H;  4OO1 G;  1X0A A;  1DTJ A;  4WAN A;  4NBQ A;  1XMQ H;  2UUC H;  4LF9 H;  4GKK H;  1S03 G;  4JI8 H;  4IFD G;  1XNR H;  1HNW H;  1UG8 A;  1ZZJ A;  2LF0 A;  5IT9 W;  1IBK H;  1PQX A;  3NCV A;  3UOE A;  1MSZ A;  1FKA H;  4DR7 H;  3GKU A;  1IBL H;  4LF7 H;  3U1K A;  2VKC A;  2CTE A;  2BA0 A;  4B8C D;  4WAL A;  2F4V H;  4NXM H;  4DV3 H;  2JVZ A;  1ODH A;  1IBM H;  1S20 A;  4LIJ A;  4QMF B;  4DR4 H;  5JEA G;  2PY9 A;  4DR3 H;  4JI3 H;  4YHH H;  3AEV B;  2CWF A;  3L7Z C;  2LRR A;  1VIH A;  3OTO H;  2UUB H;  4JI0 H;  1EC6 A;  3RF2 A;  4E9J A;  3QD7 X;  4BA2 I;  4X64 H;  1WE8 A;  4B3M H;  2JZX A;  3SB1 A;  2UU9 H;  4LF5 H;  2NN6 G;  2UXC H;  2CWH A;  2CTJ A;  4JYA H;  4YY3 H;  2OPV A;  4DV7 H;  2BL5 A;  2G8Y A;  3GAB A;  2M8W A;  2ANN A;  1XNQ H;  2UXD H;  1KHM A;  2CTM A;  2E5L H;  1FJG H;  1XMO H;  2A1S A;  2Y3M A;  3KDG A;  2CTL A;  3J7A K;  2E3U A;  2LTM A;  1X9Z A;  4JI1 H;  5LMN H;  1NXU A;  1J5K A;  1ZZK A;  4EC5 A;  4DV0 H;  2P2R A;  3T1Y H;  2FMR A;  2AXY A;  4B8T A;  3I0P A;  4JI5 H;  4DUZ H;  2VQF H;  3JAM W;  1N34 H;  1V8C A;  1XRH A;  2O4C A;  4X65 H;  2OPU A;  2X06 A;  4FJU A;  4DR1 H;  4PDB A;  2CTK A;  4AQY H;  1X4N A;  4JV5 H;  1F0X A;  5K36 G;  2FFM A;  2JEA I;  2JE6 I;  4LFB H;  2K1H A;  4NZT M;  5BR8 H;  2D9I A;  2ZQE A;  2DGR A;  3FAU A;  1DT4 A;  2HH2 A;  4AM3 A;  3KDK A;  1AN7 A;  5C0X G;  1HNX H;  1N33 H;  2QND A;  5LL6 b;  2FPH X;  4B3S H;  4DV6 H;  3T1H H;  1HNZ H;  4X62 H;  1N32 H;  2JA9 A;  2HH3 A;  3VKE A;  1ZZI A;  4DV2 H;  2HHH H;  1WVN A;  3EZJ A;  4BA1 I;  4LFC H;  3OSS D;  4DV5 H;  3J80 W;  4LF4 H;  1I94 H;  1SEI A;  2PQU A;  4GKJ H;  3J81 W;  1VIG A;  4OCH A;  1I6U A;  5LMU H;  4DV4 H;  3GR5 A;  5IWA H;  5FLX W;  2LTL A;  1TUA A;  4X66 H;  2VQE H;  4B3T H;  4JVH A;  2CPQ A;  1X4M A;  1J5E H;  4FJS A;  1K1G A;  1WHR A;  4JI2 H;  1Z2I A;  4OD6 A;  4LF8 H;  2MJH A;  2Z0S A;  4JI7 H;  2CPM A;  4LF6 H;  4DR6 H;  1V9N A;  4JI4 H;  3OET A;  1ZTG A;  1HR0 H;  4DR2 H;  1VBI A;  2YQR A;  4AIM A;  4G08 A; 
#chains in the Genus database with same CATH homology
 1WVN A;  4BA1 I;  4WAL A;  3VKE A;  2E3U A;  4JVY A;  2JEB I;  2JVZ A;  1J5K A;  1ZZK A;  4LIJ A;  4QMF B;  5JEA G;  2PY9 A;  2P2R A;  2PQU A;  2FMR A;  3V69 A;  4B8T A;  2AXY A;  3AEV B;  3L7Z C;  2ANR A;  1VIG A;  2CTF A;  2JA9 A;  1VIH A;  1J4W A;  2OPU A;  1ZZI A;  2BA0 A;  4OO1 G;  1EC6 A;  2CTK A;  1X4N A;  1DTJ A;  1TUA A;  4WAN A;  4NBQ A;  4BA2 I;  5K36 G;  1WE8 A;  2JZX A;  2JEA I;  4IFD G;  2NN6 G;  2JE6 I;  4JVH A;  2CPQ A;  1X4M A;  2CTJ A;  2OPV A;  1ZZJ A;  2BL5 A;  1K1G A;  2DGR A;  1DT4 A;  2HH2 A;  2Z0S A;  2MJH A;  2ANN A;  4AM3 A;  5C0X G;  1ZTG A;  2QND A;  2CTE A;  2CTM A;  1KHM A;  3U1K A;  2HH3 A;  2YQR A;  4AIM A;  2CTL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2ANRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations