2BL5 | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	134
structure length	134
Chain Sequence	QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKSPAL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 134 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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134 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rna binding
source organism	Xenopus laevis
publication title	Solution Structure and Backbone Dynamics of the Kh-Qua2 Region of the Xenopus Star/Gsg Quaking Protein pubmed doi rcsb
molecule keywords	MGC83862 PROTEIN
total genus	32
structure length	134
sequence length	134
ec nomenclature
pdb deposition date	2005-03-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	2bl5A00

2PQUA 1VIHA 1X4NA 4AM3A 2OPUA 4WANA 1TUAA 1VIGA 2NN6G 2OPVA 2BL5A 2E3UA 2JA9A 2CTEA 2CTLA 1WVNA 2HH3A 2JEBI 4AIMA 3L7ZC 1J5KA 4B8TA 4NBQA 2Z0SA 4LIJA 4IFDG 5K36G 2YQRA 2CTKA 3AEVB 2BA0A 2JZXA 5JEAG 2JVZA 2DGRA 2PY9A 4BA2I 1WE8A 3U1KA 2CPQA 4BA1I 1KHMA 2QNDA 4QMFB 1ZZIA 2HH2A 4JVHA 1X4MA 1ZZJA 1DTJA 1ZZKA 5C0XG 4WALA 1K1GA 2ANRA 1EC6A 2P2RA 2MJHA 4OO1G 2JEAI 2JE6I 2FMRA 3VKEA 2CTFA 2ANNA 2CTMA 1J4WA 1ZTGA 2CTJA 3V69A 1DT4A 4JVYA 2AXYA
chains in the Genus database with same CATH superfamily

4FJSA 1VIHA 1X4NA 1TUAA 2OPVA 1FKAH 4B3SH 4JI4H 2FFMA 1WVNA 2HH3A 4DV0H 1J5KA 2HHHH 4JI2H 4B8TA 1SEIA 4NBQA 4JI1H 2LRRA 4IFDG 2Y3MA 3SB1A 5JEAG 4K0KH 5A2QW 4JI7H 2M6QA 4B3MH 4LF5H 2CWFA 1IBKH 4LF4H 1S03G 4YHHH 1DTJA 1ZZKA 1WHRA 4OO1G 4EC5A 4JI3H 3I0PA 4LF6H 2JE6I 2FMRA 2CPMA 3GKUA 4DV7H 3VKEA 1XNRH 4NXNH 4X66H 2CTJA 4JVYA 2PQUA 4GKJH 2ZM6H 1VIGA 1N36H 1XRHA 4E9JA 1V8CA 4DV6H 2UUCH 1ODHA 1WTJA 4X65H 4PDBA 1HNXH 1J5EH 4GKKH 4OD6A 3OTOH 2Z0SA 4LIJA 4DV3H 4JI0H 5K36G 4B8CD 3J81W 2BA0A 4LFAH 2UUAH 2JVZA 4G08A 2G8YA 2UXBH 2UXCH 5IWAH 2CPQA 3J80W 4LF7H 2QNDA 3T1HH 1FJGH 4H8AA 4LFCH 5LL6b 5C0XG 4OCHA 1IBMH 2ANRA 4DR3H 2JEAI 3FAUA 4DUYH 2CTFA 3JAMW 4DR7H 1J4WA 1X9ZA 1I94H 2LTMA 2ZQEA 1N33H 5DT9A 2OPUA 2E5LH 1XNQH 3T1YH 1Z2IA 2JA9A 2CTEA 4DR4H 4JI6H 4AIMA 4DR2H 4WANA 1S20A 1V9NA 2YQRA 4OX9H 1IBLH 3AEVB 2JZXA 2FPHX 2X06A 2PY9A 2A1SA 1N34H 3EZJA 1HNZH 3KDGA 3RF2A 2CWHA 4DV2H 1I6UA 4QMFB 1KHMA 2HH2A 4JVHA 1NXUA 4B3RH 2UU9H 4JYAH 3KDKA 1XMQH 1ZZJA 4LF8H 3QD7X 5LMNH 1K1GA 2UXDH 1HR0H 4NZTM 4B3TH 2MJHA 4DV5H 2UUBH 2LTLA 4DR5H 2VQEH 2ANNA 4YY3H 3OSSD 4KHPH 1VBIA 3V69A 1DT4A 2AXYA 2D9IA 4DUZH 4AM3A 1F0XA 4DV1H 4DV4H 2NN6G 5BR8H 5IT9W 1PQXA 1AN7A 2BL5A 2E3UA 4DR6H 1X0AA 4NZRM 1MSZA 2CTLA 2JEBI 3L7ZC 1UG8A 4X62H 2CTKA 4LFBH 4BA2I 2DGRA 1HNWH 1N32H 1WE8A 2O4CA 2LF0A 3U1KA 4BA1I 1ZZIA 4FJUA 2PT7G 5FLXW 3GR5A 1X4MA 4DR1H 5LMUH 4LF9H 4WALA 4JI5H 3GABA 2VQFH 1EC6A 2P2RA 2F4VH 4JI8H 1XMOH 3J7AK 3UOEA 4NXMH 2M8WA 4AQYH 2K1HA 2CTMA 3NCVA 3OETA 1ZTGA 4X64H 2VKCA 4JV5H
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2PQU A;  1VIH A;  1X4N A;  4AM3 A;  2OPU A;  4WAN A;  1TUA A;  1VIG A;  2NN6 G;  2OPV A;  2BL5 A;  2E3U A;  2JA9 A;  2CTE A;  2CTL A;  1WVN A;  2HH3 A;  2JEB I;  4AIM A;  3L7Z C;  1J5K A;  4B8T A;  4NBQ A;  2Z0S A;  4LIJ A;  4IFD G;  5K36 G;  2YQR A;  2CTK A;  3AEV B;  2BA0 A;  2JZX A;  5JEA G;  2JVZ A;  2DGR A;  2PY9 A;  4BA2 I;  1WE8 A;  3U1K A;  2CPQ A;  4BA1 I;  1KHM A;  2QND A;  4QMF B;  1ZZI A;  2HH2 A;  4JVH A;  1X4M A;  1ZZJ A;  1DTJ A;  1ZZK A;  5C0X G;  4WAL A;  1K1G A;  2ANR A;  1EC6 A;  2P2R A;  2MJH A;  4OO1 G;  2JEA I;  2JE6 I;  2FMR A;  3VKE A;  2CTF A;  2ANN A;  2CTM A;  1J4W A;  1ZTG A;  2CTJ A;  3V69 A;  1DT4 A;  4JVY A;  2AXY A; 
#chains in the Genus database with same CATH topology
 4FJS A;  1VIH A;  1X4N A;  1TUA A;  2OPV A;  1FKA H;  4B3S H;  4JI4 H;  2FFM A;  1WVN A;  2HH3 A;  4DV0 H;  1J5K A;  2HHH H;  4JI2 H;  4B8T A;  1SEI A;  4NBQ A;  4JI1 H;  2LRR A;  4IFD G;  2Y3M A;  3SB1 A;  5JEA G;  4K0K H;  5A2Q W;  4JI7 H;  2M6Q A;  4B3M H;  4LF5 H;  2CWF A;  1IBK H;  4LF4 H;  1S03 G;  4YHH H;  1DTJ A;  1ZZK A;  1WHR A;  4OO1 G;  4EC5 A;  4JI3 H;  3I0P A;  4LF6 H;  2JE6 I;  2FMR A;  2CPM A;  3GKU A;  4DV7 H;  3VKE A;  1XNR H;  4NXN H;  4X66 H;  2CTJ A;  4JVY A;  2PQU A;  4GKJ H;  2ZM6 H;  1VIG A;  1N36 H;  1XRH A;  4E9J A;  1V8C A;  4DV6 H;  2UUC H;  1ODH A;  1WTJ A;  4X65 H;  4PDB A;  1HNX H;  1J5E H;  4GKK H;  4OD6 A;  3OTO H;  2Z0S A;  4LIJ A;  4DV3 H;  4JI0 H;  5K36 G;  4B8C D;  3J81 W;  2BA0 A;  4LFA H;  2UUA H;  2JVZ A;  4G08 A;  2G8Y A;  2UXB H;  2UXC H;  5IWA H;  2CPQ A;  3J80 W;  4LF7 H;  2QND A;  3T1H H;  1FJG H;  4H8A A;  4LFC H;  5LL6 b;  5C0X G;  4OCH A;  1IBM H;  2ANR A;  4DR3 H;  2JEA I;  3FAU A;  4DUY H;  2CTF A;  3JAM W;  4DR7 H;  1J4W A;  1X9Z A;  1I94 H;  2LTM A;  2ZQE A;  1N33 H;  5DT9 A;  2OPU A;  2E5L H;  1XNQ H;  3T1Y H;  1Z2I A;  2JA9 A;  2CTE A;  4DR4 H;  4JI6 H;  4AIM A;  4DR2 H;  4WAN A;  1S20 A;  1V9N A;  2YQR A;  4OX9 H;  1IBL H;  3AEV B;  2JZX A;  2FPH X;  2X06 A;  2PY9 A;  2A1S A;  1N34 H;  3EZJ A;  1HNZ H;  3KDG A;  3RF2 A;  2CWH A;  4DV2 H;  1I6U A;  4QMF B;  1KHM A;  2HH2 A;  4JVH A;  1NXU A;  4B3R H;  2UU9 H;  4JYA H;  3KDK A;  1XMQ H;  1ZZJ A;  4LF8 H;  3QD7 X;  5LMN H;  1K1G A;  2UXD H;  1HR0 H;  4NZT M;  4B3T H;  2MJH A;  4DV5 H;  2UUB H;  2LTL A;  4DR5 H;  2VQE H;  2ANN A;  4YY3 H;  3OSS D;  4KHP H;  1VBI A;  3V69 A;  1DT4 A;  2AXY A;  2D9I A;  4DUZ H;  4AM3 A;  1F0X A;  4DV1 H;  4DV4 H;  2NN6 G;  5BR8 H;  5IT9 W;  1PQX A;  1AN7 A;  2BL5 A;  2E3U A;  4DR6 H;  1X0A A;  4NZR M;  1MSZ A;  2CTL A;  2JEB I;  3L7Z C;  1UG8 A;  4X62 H;  2CTK A;  4LFB H;  4BA2 I;  2DGR A;  1HNW H;  1N32 H;  1WE8 A;  2O4C A;  2LF0 A;  3U1K A;  4BA1 I;  1ZZI A;  4FJU A;  2PT7 G;  5FLX W;  3GR5 A;  1X4M A;  4DR1 H;  5LMU H;  4LF9 H;  4WAL A;  4JI5 H;  3GAB A;  2VQF H;  1EC6 A;  2P2R A;  2F4V H;  4JI8 H;  1XMO H;  3J7A K;  3UOE A;  4NXM H;  2M8W A;  4AQY H;  2K1H A;  2CTM A;  3NCV A;  3OET A;  1ZTG A;  4X64 H;  2VKC A;  4JV5 H; 
#chains in the Genus database with same CATH homology
 2PQU A;  1VIH A;  1X4N A;  4AM3 A;  2OPU A;  4WAN A;  1TUA A;  1VIG A;  2NN6 G;  2OPV A;  2BL5 A;  2E3U A;  2JA9 A;  2CTE A;  2CTL A;  1WVN A;  2HH3 A;  2JEB I;  4AIM A;  3L7Z C;  1J5K A;  4B8T A;  4NBQ A;  2Z0S A;  4LIJ A;  4IFD G;  5K36 G;  2YQR A;  2CTK A;  3AEV B;  2BA0 A;  2JZX A;  5JEA G;  2JVZ A;  2DGR A;  2PY9 A;  4BA2 I;  1WE8 A;  3U1K A;  2CPQ A;  4BA1 I;  1KHM A;  2QND A;  4QMF B;  1ZZI A;  2HH2 A;  4JVH A;  1X4M A;  1ZZJ A;  1DTJ A;  1ZZK A;  5C0X G;  4WAL A;  1K1G A;  2ANR A;  1EC6 A;  2P2R A;  2MJH A;  4OO1 G;  2JEA I;  2JE6 I;  2FMR A;  3VKE A;  2CTF A;  2ANN A;  2CTM A;  1J4W A;  1ZTG A;  2CTJ A;  3V69 A;  1DT4 A;  4JVY A;  2AXY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2BL5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations