2CTJ | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	95
structure length	95
Chain Sequence	GSSGSSGSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQTKSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Homo sapiens
publication title	Solution structure of the 8th KH type I domain from human Vigilin rcsb
molecule keywords	Vigilin
total genus	17
structure length	95
sequence length	95
ec nomenclature
pdb deposition date	2005-05-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	2ctjA00

2AXYA 1WE8A 2HH2A 2JVZA 1K1GA 2CTMA 3VKEA 4OO1G 1ZZIA 1ZTGA 2BA0A 4AM3A 1ZZJA 4LIJA 2JEAI 2PY9A 2DGRA 2CTJA 3AEVB 2CTLA 4QMFB 1KHMA 4B8TA 2PQUA 2HH3A 2FMRA 2YQRA 2E3UA 4NBQA 2P2RA 2ANNA 5K36G 2Z0SA 2OPUA 3V69A 2BL5A 1EC6A 1DT4A 1X4MA 4BA2I 2JA9A 1J5KA 4JVHA 2OPVA 2JEBI 2CTKA 5JEAG 1VIHA 1WVNA 1ZZKA 2JE6I 1VIGA 4AIMA 4WANA 1DTJA 2CTFA 2CTEA 2CPQA 2ANRA 1TUAA 4IFDG 4WALA 1J4WA 2MJHA 2NN6G 2JZXA 1X4NA 2QNDA 3L7ZC 3U1KA 4JVYA 4BA1I 5C0XG
chains in the Genus database with same CATH superfamily

1WE8A 2HH2A 1ODHA 2CPMA 4OO1G 1ZTGA 2BA0A 1N36H 4LIJA 2JEAI 3AEVB 3GR5A 1KHMA 4OCHA 2HH3A 2FMRA 2UUAH 2E3UA 2LRRA 2Z0SA 3SB1A 5FLXW 4DR3H 1IBLH 4DR4H 4GKJH 2G8YA 1FJGH 1HNWH 5IWAH 4LF4H 4LFAH 3KDKA 4BA2I 1I6UA 4DR1H 2JA9A 1J5KA 1XMQH 2OPVA 4NZTM 5JEAG 4LFCH 1AN7A 3J7AK 4X65H 4B3SH 2JE6I 1IBKH 4LF7H 4LF6H 1DTJA 4X64H 2E5LH 4IFDG 4WALA 4LF8H 2VQFH 4YY3H 2VKCA 2PT7G 1EC6A 2UXCH 5C0XG 4JI1H 2AXYA 4JI8H 5K36G 2JVZA 3VKEA 3KDGA 1HR0H 1ZZIA 4YHHH 4K0KH 5DT9A 4AM3A 4DR7H 1ZZJA 2D9IA 1Z2IA 3I0PA 3RF2A 4X62H 2CTJA 4X66H 1MSZA 4JI3H 4QMFB 4E9JA 2M6QA 4OD6A 2LTLA 4NBQA 2YQRA 2ANNA 4DV6H 1NXUA 1XRHA 4G08A 2Y3MA 2BL5A 1HNZH 1X4MA 2ZQEA 1V9NA 1S20A 2JEBI 3OTOH 1VIHA 1WVNA 1FKAH 1N34H 1X0AA 4AIMA 4WANA 5BR8H 3OSSD 2LF0A 2CTEA 2ANRA 4FJSA 4B3TH 2F4VH 2K1HA 2NN6G 4LF9H 4GKKH 4JI2H 2VQEH 4JVYA 3U1KA 4NXNH 4JYAH 4BA1I 1F0XA 3UOEA 5LMUH 1I94H 1WHRA 2X06A 4DV7H 2ZM6H 3T1YH 2PY9A 2DGRA 4KHPH 3FAUA 2UXDH 3GABA 2PQUA 2P2RA 3J80W 4DV0H 2FPHX 2LTMA 4DR2H 1DT4A 2HHHH 4DR6H 1IBMH 4DV5H 2CTKA 2M8WA 3EZJA 3NCVA 1VBIA 2A1SA 1VIGA 5LMNH 3GKUA 2CTFA 1S03G 2CPQA 4JI7H 4NZRM 1TUAA 4JV5H 1J4WA 4FJUA 4DV1H 2MJHA 2UU9H 1N33H 1UG8A 2JZXA 1X4NA 1XNQH 3JAMW 3OETA 1HNXH 5IT9W 1K1GA 2CTMA 4NXMH 3T1HH 4B3MH 4LFBH 1PQXA 1X9ZA 2CTLA 4B8TA 5A2QW 4DR5H 4JI4H 4JI6H 1WTJA 4B8CD 1J5EH 2UUCH 4AQYH 2OPUA 3QD7X 3V69A 4DUYH 4PDBA 5LL6b 2FFMA 2UUBH 1SEIA 4LF5H 4JVHA 1V8CA 1XMOH 1ZZKA 1N32H 4DV3H 4EC5A 2O4CA 1XNRH 4DUZH 4DV2H 2UXBH 2CWFA 4JI5H 4OX9H 4JI0H 4B3RH 4DV4H 4H8AA 2QNDA 2CWHA 3L7ZC 3J81W
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2AXY A;  1WE8 A;  2HH2 A;  2JVZ A;  1K1G A;  2CTM A;  3VKE A;  4OO1 G;  1ZZI A;  1ZTG A;  2BA0 A;  4AM3 A;  1ZZJ A;  4LIJ A;  2JEA I;  2PY9 A;  2DGR A;  2CTJ A;  3AEV B;  2CTL A;  4QMF B;  1KHM A;  4B8T A;  2PQU A;  2HH3 A;  2FMR A;  2YQR A;  2E3U A;  4NBQ A;  2P2R A;  2ANN A;  5K36 G;  2Z0S A;  2OPU A;  3V69 A;  2BL5 A;  1EC6 A;  1DT4 A;  1X4M A;  4BA2 I;  2JA9 A;  1J5K A;  4JVH A;  2OPV A;  2JEB I;  2CTK A;  5JEA G;  1VIH A;  1WVN A;  1ZZK A;  2JE6 I;  1VIG A;  4AIM A;  4WAN A;  1DTJ A;  2CTF A;  2CTE A;  2CPQ A;  2ANR A;  1TUA A;  4IFD G;  4WAL A;  1J4W A;  2MJH A;  2NN6 G;  2JZX A;  1X4N A;  2QND A;  3L7Z C;  3U1K A;  4JVY A;  4BA1 I;  5C0X G; 
#chains in the Genus database with same CATH topology
 1WE8 A;  2HH2 A;  1ODH A;  2CPM A;  4OO1 G;  1ZTG A;  2BA0 A;  1N36 H;  4LIJ A;  2JEA I;  3AEV B;  3GR5 A;  1KHM A;  4OCH A;  2HH3 A;  2FMR A;  2UUA H;  2E3U A;  2LRR A;  2Z0S A;  3SB1 A;  5FLX W;  4DR3 H;  1IBL H;  4DR4 H;  4GKJ H;  2G8Y A;  1FJG H;  1HNW H;  5IWA H;  4LF4 H;  4LFA H;  3KDK A;  4BA2 I;  1I6U A;  4DR1 H;  2JA9 A;  1J5K A;  1XMQ H;  2OPV A;  4NZT M;  5JEA G;  4LFC H;  1AN7 A;  3J7A K;  4X65 H;  4B3S H;  2JE6 I;  1IBK H;  4LF7 H;  4LF6 H;  1DTJ A;  4X64 H;  2E5L H;  4IFD G;  4WAL A;  4LF8 H;  2VQF H;  4YY3 H;  2VKC A;  2PT7 G;  1EC6 A;  2UXC H;  5C0X G;  4JI1 H;  2AXY A;  4JI8 H;  5K36 G;  2JVZ A;  3VKE A;  3KDG A;  1HR0 H;  1ZZI A;  4YHH H;  4K0K H;  5DT9 A;  4AM3 A;  4DR7 H;  1ZZJ A;  2D9I A;  1Z2I A;  3I0P A;  3RF2 A;  4X62 H;  2CTJ A;  4X66 H;  1MSZ A;  4JI3 H;  4QMF B;  4E9J A;  2M6Q A;  4OD6 A;  2LTL A;  4NBQ A;  2YQR A;  2ANN A;  4DV6 H;  1NXU A;  1XRH A;  4G08 A;  2Y3M A;  2BL5 A;  1HNZ H;  1X4M A;  2ZQE A;  1V9N A;  1S20 A;  2JEB I;  3OTO H;  1VIH A;  1WVN A;  1FKA H;  1N34 H;  1X0A A;  4AIM A;  4WAN A;  5BR8 H;  3OSS D;  2LF0 A;  2CTE A;  2ANR A;  4FJS A;  4B3T H;  2F4V H;  2K1H A;  2NN6 G;  4LF9 H;  4GKK H;  4JI2 H;  2VQE H;  4JVY A;  3U1K A;  4NXN H;  4JYA H;  4BA1 I;  1F0X A;  3UOE A;  5LMU H;  1I94 H;  1WHR A;  2X06 A;  4DV7 H;  2ZM6 H;  3T1Y H;  2PY9 A;  2DGR A;  4KHP H;  3FAU A;  2UXD H;  3GAB A;  2PQU A;  2P2R A;  3J80 W;  4DV0 H;  2FPH X;  2LTM A;  4DR2 H;  1DT4 A;  2HHH H;  4DR6 H;  1IBM H;  4DV5 H;  2CTK A;  2M8W A;  3EZJ A;  3NCV A;  1VBI A;  2A1S A;  1VIG A;  5LMN H;  3GKU A;  2CTF A;  1S03 G;  2CPQ A;  4JI7 H;  4NZR M;  1TUA A;  4JV5 H;  1J4W A;  4FJU A;  4DV1 H;  2MJH A;  2UU9 H;  1N33 H;  1UG8 A;  2JZX A;  1X4N A;  1XNQ H;  3JAM W;  3OET A;  1HNX H;  5IT9 W;  1K1G A;  2CTM A;  4NXM H;  3T1H H;  4B3M H;  4LFB H;  1PQX A;  1X9Z A;  2CTL A;  4B8T A;  5A2Q W;  4DR5 H;  4JI4 H;  4JI6 H;  1WTJ A;  4B8C D;  1J5E H;  2UUC H;  4AQY H;  2OPU A;  3QD7 X;  3V69 A;  4DUY H;  4PDB A;  5LL6 b;  2FFM A;  2UUB H;  1SEI A;  4LF5 H;  4JVH A;  1V8C A;  1XMO H;  1ZZK A;  1N32 H;  4DV3 H;  4EC5 A;  2O4C A;  1XNR H;  4DUZ H;  4DV2 H;  2UXB H;  2CWF A;  4JI5 H;  4OX9 H;  4JI0 H;  4B3R H;  4DV4 H;  4H8A A;  2QND A;  2CWH A;  3L7Z C;  3J81 W; 
#chains in the Genus database with same CATH homology
 2AXY A;  1WE8 A;  2HH2 A;  2JVZ A;  1K1G A;  2CTM A;  3VKE A;  4OO1 G;  1ZZI A;  1ZTG A;  2BA0 A;  4AM3 A;  1ZZJ A;  4LIJ A;  2JEA I;  2PY9 A;  2DGR A;  2CTJ A;  3AEV B;  2CTL A;  4QMF B;  1KHM A;  4B8T A;  2PQU A;  2HH3 A;  2FMR A;  2YQR A;  2E3U A;  4NBQ A;  2P2R A;  2ANN A;  5K36 G;  2Z0S A;  2OPU A;  3V69 A;  2BL5 A;  1EC6 A;  1DT4 A;  1X4M A;  4BA2 I;  2JA9 A;  1J5K A;  4JVH A;  2OPV A;  2JEB I;  2CTK A;  5JEA G;  1VIH A;  1WVN A;  1ZZK A;  2JE6 I;  1VIG A;  4AIM A;  4WAN A;  1DTJ A;  2CTF A;  2CTE A;  2CPQ A;  2ANR A;  1TUA A;  4IFD G;  4WAL A;  1J4W A;  2MJH A;  2NN6 G;  2JZX A;  1X4N A;  2QND A;  3L7Z C;  3U1K A;  4JVY A;  4BA1 I;  5C0X G;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2CTJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations