2CTKA

Solution structure of the 12th kh type i domain from human vigilin
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
104
structure length
104
Chain Sequence
GSSGSSGKEALEALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRALRSFKSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (25-32)TIV1 (32-35)AH2 (37-46)EMPTYAH3 (68-94)S2 (49-51)S3 (61-66)3H1 (55-57)O1 (94-96)S1 (17-22)Updating...
connected with : NaN
molecule tags Transport protein, rna binding protein
source organism Homo sapiens
publication title Solution structure of the 12th KH type I domain from human Vigilin
rcsb
molecule keywords Vigilin
total genus 23
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2005-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2ctkA00
2OPUA 2E3UA 2P2RA 2PQUA 2JVZA 2CTLA 1J5KA 2Z0SA 4IFDG 4WANA 4BA2I 1WE8A 2YQRA 3L7ZC 3V69A 2OPVA 2QNDA 1KHMA 4QMFB 4JVHA 2DGRA 1VIHA 1X4NA 1J4WA 2CTEA 2JEBI 1ZZIA 5K36G 1WVNA 1DTJA 2CTFA 2ANRA 1EC6A 2CPQA 4B8TA 1K1GA 1ZTGA 1VIGA 5JEAG 2CTKA 1TUAA 2HH2A 4NBQA 2JE6I 2BA0A 1ZZJA 2MJHA 2PY9A 4JVYA 2FMRA 4LIJA 4BA1I 1ZZKA 2CTMA 2JEAI 4AIMA 4OO1G 2HH3A 1DT4A 2JA9A 2NN6G 2CTJA 2ANNA 3AEVB 3VKEA 2BL5A 2JZXA 4WALA 4AM3A 5C0XG 2AXYA 1X4MA 3U1KA
chains in the Genus database with same CATH superfamily
2OPUA 1Z2IA 5IWAH 4DR4H 2Z0SA 1VBIA 3T1YH 3L7ZC 4X65H 4DV2H 2HHHH 2OPVA 4BA2I 2CWFA 4YHHH 4DR5H 2LTMA 2LTLA 1ZZIA 3GKUA 4DV4H 2Y3MA 1DTJA 1I6UA 4LF8H 1K1GA 1XNRH 2HH2A 2O4CA 1ZZJA 2JE6I 2BA0A 5BR8H 4DV7H 4NXMH 2JEAI 5DT9A 2LF0A 4B3TH 2UUAH 4LF9H 4X66H 4KHPH 2NN6G 4JI6H 1IBLH 2ANNA 2UU9H 2JZXA 4AM3A 1IBMH 1XNQH 1X4MA 4DR2H 1N34H 2PQUA 1WTJA 4E9JA 4DR6H 4JV5H 4B3MH 4B3SH 3FAUA 1WHRA 1PQXA 2A1SA 1FKAH 2QNDA 1KHMA 4DUZH 4X62H 4LF4H 4JVHA 2VQEH 4JI1H 2JEBI 5LMUH 1HNXH 4OCHA 3GR5A 1V8CA 3RF2A 1EC6A 3EZJA 2UXCH 2G8YA 5JEAG 2PY9A 1TUAA 4NBQA 2K1HA 1IBKH 3GABA 4LIJA 2D9IA 5A2QW 2F4VH 4LFCH 2ZM6H 1SEIA 4OD6A 3AEVB 4PDBA 2PT7G 1J5EH 5LMNH 5IT9W 2AXYA 2X06A 2FFMA 3U1KA 4DV3H 4LF6H 2P2RA 2E3UA 4LF7H 4JI3H 2JVZA 2CTLA 4JYAH 4DR7H 4WANA 4IFDG 1WE8A 2YQRA 1N36H 1HNWH 2M8WA 4X64H 2VQFH 3KDGA 2DGRA 3OSSD 1VIHA 3JAMW 2CWHA 4NXNH 4GKJH 3J81W 2UUBH 1FJGH 2UXDH 1XMOH 1N32H 2ANRA 1XMQH 2CPQA 3T1HH 2FPHX 3OTOH 1UG8A 1VIGA 2CTKA 2M6QA 3NCVA 1I94H 2MJHA 3UOEA 1S03G 4NZRM 2FMRA 5LL6b 4BA1I 4DV5H 4AIMA 4DR3H 4OX9H 4JI7H 4OO1G 2HH3A 1DT4A 3QD7X 2CTJA 4AQYH 3OETA 4DV6H 4WALA 4DUYH 5C0XG 1HR0H 4JI8H 4LFAH 2LRRA 1J5KA 4LFBH 4H8AA 4JI2H 4DV1H 1ODHA 1XRHA 1HNZH 4GKKH 3V69A 2UUCH 3I0PA 4QMFB 4FJSA 4YY3H 1X4NA 1J4WA 2CTEA 1MSZA 1AN7A 3KDKA 1WVNA 2CPMA 5K36G 4EC5A 4B8CD 4FJUA 2CTFA 4B3RH 1NXUA 1N33H 4G08A 1X0AA 4B8TA 1ZTGA 4JVYA 2E5LH 4JI5H 4NZTM 1ZZKA 1S20A 2CTMA 3J7AK 4JI4H 2VKCA 4JI0H 2UXBH 4DV0H 2JA9A 1F0XA 1X9ZA 2ZQEA 4DR1H 3SB1A 3J80W 5FLXW 1V9NA 2BL5A 3VKEA 4LF5H 4K0KH
chains in the Genus database with same CATH topology
2OPUA 2E3UA 2P2RA 2PQUA 2JVZA 2CTLA 1J5KA 2Z0SA 4IFDG 4WANA 4BA2I 1WE8A 2YQRA 3L7ZC 3V69A 2OPVA 2QNDA 1KHMA 4QMFB 4JVHA 2DGRA 1VIHA 1X4NA 1J4WA 2CTEA 2JEBI 1ZZIA 5K36G 1WVNA 1DTJA 2CTFA 2ANRA 1EC6A 2CPQA 4B8TA 1K1GA 1ZTGA 1VIGA 5JEAG 2CTKA 1TUAA 2HH2A 4NBQA 2JE6I 2BA0A 1ZZJA 2MJHA 2PY9A 4JVYA 2FMRA 4LIJA 4BA1I 1ZZKA 2CTMA 2JEAI 4AIMA 4OO1G 2HH3A 1DT4A 2JA9A 2NN6G 2CTJA 2ANNA 3AEVB 3VKEA 2BL5A 2JZXA 4WALA 4AM3A 5C0XG 2AXYA 1X4MA 3U1KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OPU A;  2E3U A;  2P2R A;  2PQU A;  2JVZ A;  2CTL A;  1J5K A;  2Z0S A;  4IFD G;  4WAN A;  4BA2 I;  1WE8 A;  2YQR A;  3L7Z C;  3V69 A;  2OPV A;  2QND A;  1KHM A;  4QMF B;  4JVH A;  2DGR A;  1VIH A;  1X4N A;  1J4W A;  2CTE A;  2JEB I;  1ZZI A;  5K36 G;  1WVN A;  1DTJ A;  2CTF A;  2ANR A;  1EC6 A;  2CPQ A;  4B8T A;  1K1G A;  1ZTG A;  1VIG A;  5JEA G;  2CTK A;  1TUA A;  2HH2 A;  4NBQ A;  2JE6 I;  2BA0 A;  1ZZJ A;  2MJH A;  2PY9 A;  4JVY A;  2FMR A;  4LIJ A;  4BA1 I;  1ZZK A;  2CTM A;  2JEA I;  4AIM A;  4OO1 G;  2HH3 A;  1DT4 A;  2JA9 A;  2NN6 G;  2CTJ A;  2ANN A;  3AEV B;  3VKE A;  2BL5 A;  2JZX A;  4WAL A;  4AM3 A;  5C0X G;  2AXY A;  1X4M A;  3U1K A; 
#chains in the Genus database with same CATH topology
 2OPU A;  1Z2I A;  5IWA H;  4DR4 H;  2Z0S A;  1VBI A;  3T1Y H;  3L7Z C;  4X65 H;  4DV2 H;  2HHH H;  2OPV A;  4BA2 I;  2CWF A;  4YHH H;  4DR5 H;  2LTM A;  2LTL A;  1ZZI A;  3GKU A;  4DV4 H;  2Y3M A;  1DTJ A;  1I6U A;  4LF8 H;  1K1G A;  1XNR H;  2HH2 A;  2O4C A;  1ZZJ A;  2JE6 I;  2BA0 A;  5BR8 H;  4DV7 H;  4NXM H;  2JEA I;  5DT9 A;  2LF0 A;  4B3T H;  2UUA H;  4LF9 H;  4X66 H;  4KHP H;  2NN6 G;  4JI6 H;  1IBL H;  2ANN A;  2UU9 H;  2JZX A;  4AM3 A;  1IBM H;  1XNQ H;  1X4M A;  4DR2 H;  1N34 H;  2PQU A;  1WTJ A;  4E9J A;  4DR6 H;  4JV5 H;  4B3M H;  4B3S H;  3FAU A;  1WHR A;  1PQX A;  2A1S A;  1FKA H;  2QND A;  1KHM A;  4DUZ H;  4X62 H;  4LF4 H;  4JVH A;  2VQE H;  4JI1 H;  2JEB I;  5LMU H;  1HNX H;  4OCH A;  3GR5 A;  1V8C A;  3RF2 A;  1EC6 A;  3EZJ A;  2UXC H;  2G8Y A;  5JEA G;  2PY9 A;  1TUA A;  4NBQ A;  2K1H A;  1IBK H;  3GAB A;  4LIJ A;  2D9I A;  5A2Q W;  2F4V H;  4LFC H;  2ZM6 H;  1SEI A;  4OD6 A;  3AEV B;  4PDB A;  2PT7 G;  1J5E H;  5LMN H;  5IT9 W;  2AXY A;  2X06 A;  2FFM A;  3U1K A;  4DV3 H;  4LF6 H;  2P2R A;  2E3U A;  4LF7 H;  4JI3 H;  2JVZ A;  2CTL A;  4JYA H;  4DR7 H;  4WAN A;  4IFD G;  1WE8 A;  2YQR A;  1N36 H;  1HNW H;  2M8W A;  4X64 H;  2VQF H;  3KDG A;  2DGR A;  3OSS D;  1VIH A;  3JAM W;  2CWH A;  4NXN H;  4GKJ H;  3J81 W;  2UUB H;  1FJG H;  2UXD H;  1XMO H;  1N32 H;  2ANR A;  1XMQ H;  2CPQ A;  3T1H H;  2FPH X;  3OTO H;  1UG8 A;  1VIG A;  2CTK A;  2M6Q A;  3NCV A;  1I94 H;  2MJH A;  3UOE A;  1S03 G;  4NZR M;  2FMR A;  5LL6 b;  4BA1 I;  4DV5 H;  4AIM A;  4DR3 H;  4OX9 H;  4JI7 H;  4OO1 G;  2HH3 A;  1DT4 A;  3QD7 X;  2CTJ A;  4AQY H;  3OET A;  4DV6 H;  4WAL A;  4DUY H;  5C0X G;  1HR0 H;  4JI8 H;  4LFA H;  2LRR A;  1J5K A;  4LFB H;  4H8A A;  4JI2 H;  4DV1 H;  1ODH A;  1XRH A;  1HNZ H;  4GKK H;  3V69 A;  2UUC H;  3I0P A;  4QMF B;  4FJS A;  4YY3 H;  1X4N A;  1J4W A;  2CTE A;  1MSZ A;  1AN7 A;  3KDK A;  1WVN A;  2CPM A;  5K36 G;  4EC5 A;  4B8C D;  4FJU A;  2CTF A;  4B3R H;  1NXU A;  1N33 H;  4G08 A;  1X0A A;  4B8T A;  1ZTG A;  4JVY A;  2E5L H;  4JI5 H;  4NZT M;  1ZZK A;  1S20 A;  2CTM A;  3J7A K;  4JI4 H;  2VKC A;  4JI0 H;  2UXB H;  4DV0 H;  2JA9 A;  1F0X A;  1X9Z A;  2ZQE A;  4DR1 H;  3SB1 A;  3J80 W;  5FLX W;  1V9N A;  2BL5 A;  3VKE A;  4LF5 H;  4K0K H; 
#chains in the Genus database with same CATH homology
 2OPU A;  2E3U A;  2P2R A;  2PQU A;  2JVZ A;  2CTL A;  1J5K A;  2Z0S A;  4IFD G;  4WAN A;  4BA2 I;  1WE8 A;  2YQR A;  3L7Z C;  3V69 A;  2OPV A;  2QND A;  1KHM A;  4QMF B;  4JVH A;  2DGR A;  1VIH A;  1X4N A;  1J4W A;  2CTE A;  2JEB I;  1ZZI A;  5K36 G;  1WVN A;  1DTJ A;  2CTF A;  2ANR A;  1EC6 A;  2CPQ A;  4B8T A;  1K1G A;  1ZTG A;  1VIG A;  5JEA G;  2CTK A;  1TUA A;  2HH2 A;  4NBQ A;  2JE6 I;  2BA0 A;  1ZZJ A;  2MJH A;  2PY9 A;  4JVY A;  2FMR A;  4LIJ A;  4BA1 I;  1ZZK A;  2CTM A;  2JEA I;  4AIM A;  4OO1 G;  2HH3 A;  1DT4 A;  2JA9 A;  2NN6 G;  2CTJ A;  2ANN A;  3AEV B;  3VKE A;  2BL5 A;  2JZX A;  4WAL A;  4AM3 A;  5C0X G;  2AXY A;  1X4M A;  3U1K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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