2CTLA

Solution structure of the 13th kh type i domain from human vigilin
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
97
structure length
97
Chain Sequence
GSSGSSGEQEDRALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQMSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (11-15)S1 (17-22)EMPTYTI3 (61-64)AH2 (27-32)TI1 (24-27)AH3 (37-46)S2 (49-51)TIV1 (54-57)TIV3 (57-60)TIV2 (55-58)AH4 (71-90)TII1 (90-93)S3 (64-69)Updating...
connected with : NaN
molecule tags Transport protein, rna binding protein
source organism Homo sapiens
publication title Solution structure of the 13th KH type I domain from human Vigilin
rcsb
molecule keywords Vigilin
total genus 16
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2005-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2ctlA00
1ZZJA 4QMFB 2JEBI 2QNDA 4NBQA 3V69A 2HH2A 1WE8A 2CTLA 1DT4A 3VKEA 1VIHA 4AM3A 2MJHA 1DTJA 2CTEA 2FMRA 1KHMA 2AXYA 4IFDG 2JE6I 2DGRA 4WALA 3L7ZC 5JEAG 1X4MA 1J5KA 2CTMA 2BL5A 2JA9A 4JVHA 1X4NA 2OPVA 4BA2I 1ZZKA 3U1KA 4B8TA 2CTKA 2PY9A 2E3UA 4AIMA 2NN6G 2HH3A 4OO1G 2BA0A 2JVZA 2OPUA 5C0XG 1K1GA 2CTFA 1WVNA 1VIGA 2PQUA 2Z0SA 1ZTGA 5K36G 2CTJA 4JVYA 2CPQA 1TUAA 2YQRA 2JEAI 4BA1I 4LIJA 2ANRA 4WANA 3AEVB 1ZZIA 2JZXA 1J4WA 2P2RA 1EC6A 2ANNA
chains in the Genus database with same CATH superfamily
1NXUA 2JEBI 3OETA 2O4CA 2QNDA 1WE8A 4AM3A 4H8AA 2E5LH 2VQFH 1N36H 2CTEA 1KHMA 4X62H 4GKJH 1I6UA 3L7ZC 3RF2A 2CPMA 3OSSD 3SB1A 5JEAG 3T1YH 2LTMA 1IBLH 2UUBH 2BL5A 4DV5H 4JI5H 4LF4H 1FJGH 4NZRM 4JVHA 2LRRA 2OPVA 4B8TA 5A2QW 4EC5A 3J81W 2HH3A 2VQEH 4JI2H 4DUZH 2JVZA 5IWAH 2CWFA 1V8CA 1K1GA 1VIGA 5FLXW 2FFMA 1XMQH 4YY3H 2CTJA 3NCVA 1V9NA 1TUAA 1HNXH 2HHHH 2ANRA 4LIJA 4LFCH 3FAUA 1I94H 1ZZIA 4DUYH 2LF0A 4LFAH 2ANNA 4X65H 3KDKA 1SEIA 4QMFB 2LTLA 4OX9H 3V69A 1J5EH 1N34H 2K1HA 4DR5H 2AXYA 2JE6I 4JI0H 4X64H 2A1SA 1XMOH 4KHPH 2JA9A 1HNZH 4LF5H 4JI3H 4FJSA 2PY9A 2CTKA 4FJUA 4YHHH 1XRHA 1VBIA 3T1HH 2OPUA 4LF6H 1XNRH 1AN7A 1ODHA 2CTFA 1Z2IA 3UOEA 2PQUA 1HNWH 5K36G 1MSZA 3JAMW 1IBKH 5IT9W 4WANA 4BA1I 1PQXA 3KDGA 2UXDH 2JZXA 4PDBA 4AQYH 2P2RA 4DV2H 1F0XA 4GKKH 1ZZJA 4DR2H 3GKUA 2CTLA 3EZJA 3GR5A 4OCHA 1DTJA 5DT9A 2FMRA 4DV3H 4B3TH 4JI4H 2M8WA 4IFDG 1X9ZA 4B3RH 2DGRA 1IBMH 4NXMH 4DR1H 2ZM6H 1J5KA 3OTOH 4JI1H 2CTMA 4JV5H 4JI6H 4JYAH 1X4NA 5LMNH 4OO1G 2G8YA 2E3UA 2Y3MA 1UG8A 2F4VH 4DR7H 2UXCH 3GABA 2UUAH 1X0AA 2VKCA 4G08A 4DV6H 1ZTGA 1XNQH 2JEAI 1HR0H 2PT7G 4DR3H 4DV1H 1WHRA 1WTJA 1FKAH 4X66H 4DR4H 4NZTM 4DV7H 4NBQA 2CWHA 4LF8H 2HH2A 3VKEA 2UXBH 1DT4A 1VIHA 2MJHA 4B8CD 4OD6A 3J80W 4WALA 1N32H 4DR6H 1S20A 1X4MA 4E9JA 4LF7H 3QD7X 3I0PA 2UUCH 4DV0H 4BA2I 4B3MH 1ZZKA 3U1KA 4JI7H 4AIMA 2FPHX 2NN6G 5LMUH 4DV4H 4NXNH 3J7AK 2BA0A 5C0XG 2UU9H 2X06A 4K0KH 1WVNA 2Z0SA 4JI8H 4LFBH 4JVYA 2D9IA 5LL6b 2CPQA 2YQRA 4B3SH 1S03G 2ZQEA 2M6QA 1N33H 3AEVB 1J4WA 4LF9H 1EC6A 5BR8H
chains in the Genus database with same CATH topology
1ZZJA 4QMFB 2JEBI 2QNDA 4NBQA 3V69A 2HH2A 1WE8A 2CTLA 1DT4A 3VKEA 1VIHA 4AM3A 2MJHA 1DTJA 2CTEA 2FMRA 1KHMA 2AXYA 4IFDG 2JE6I 2DGRA 4WALA 3L7ZC 5JEAG 1X4MA 1J5KA 2CTMA 2BL5A 2JA9A 4JVHA 1X4NA 2OPVA 4BA2I 1ZZKA 3U1KA 4B8TA 2CTKA 2PY9A 2E3UA 4AIMA 2NN6G 2HH3A 4OO1G 2BA0A 2JVZA 2OPUA 5C0XG 1K1GA 2CTFA 1WVNA 1VIGA 2PQUA 2Z0SA 1ZTGA 5K36G 2CTJA 4JVYA 2CPQA 1TUAA 2YQRA 2JEAI 4BA1I 4LIJA 2ANRA 4WANA 3AEVB 1ZZIA 2JZXA 1J4WA 2P2RA 1EC6A 2ANNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZZJ A;  4QMF B;  2JEB I;  2QND A;  4NBQ A;  3V69 A;  2HH2 A;  1WE8 A;  2CTL A;  1DT4 A;  3VKE A;  1VIH A;  4AM3 A;  2MJH A;  1DTJ A;  2CTE A;  2FMR A;  1KHM A;  2AXY A;  4IFD G;  2JE6 I;  2DGR A;  4WAL A;  3L7Z C;  5JEA G;  1X4M A;  1J5K A;  2CTM A;  2BL5 A;  2JA9 A;  4JVH A;  1X4N A;  2OPV A;  4BA2 I;  1ZZK A;  3U1K A;  4B8T A;  2CTK A;  2PY9 A;  2E3U A;  4AIM A;  2NN6 G;  2HH3 A;  4OO1 G;  2BA0 A;  2JVZ A;  2OPU A;  5C0X G;  1K1G A;  2CTF A;  1WVN A;  1VIG A;  2PQU A;  2Z0S A;  1ZTG A;  5K36 G;  2CTJ A;  4JVY A;  2CPQ A;  1TUA A;  2YQR A;  2JEA I;  4BA1 I;  4LIJ A;  2ANR A;  4WAN A;  3AEV B;  1ZZI A;  2JZX A;  1J4W A;  2P2R A;  1EC6 A;  2ANN A; 
#chains in the Genus database with same CATH topology
 1NXU A;  2JEB I;  3OET A;  2O4C A;  2QND A;  1WE8 A;  4AM3 A;  4H8A A;  2E5L H;  2VQF H;  1N36 H;  2CTE A;  1KHM A;  4X62 H;  4GKJ H;  1I6U A;  3L7Z C;  3RF2 A;  2CPM A;  3OSS D;  3SB1 A;  5JEA G;  3T1Y H;  2LTM A;  1IBL H;  2UUB H;  2BL5 A;  4DV5 H;  4JI5 H;  4LF4 H;  1FJG H;  4NZR M;  4JVH A;  2LRR A;  2OPV A;  4B8T A;  5A2Q W;  4EC5 A;  3J81 W;  2HH3 A;  2VQE H;  4JI2 H;  4DUZ H;  2JVZ A;  5IWA H;  2CWF A;  1V8C A;  1K1G A;  1VIG A;  5FLX W;  2FFM A;  1XMQ H;  4YY3 H;  2CTJ A;  3NCV A;  1V9N A;  1TUA A;  1HNX H;  2HHH H;  2ANR A;  4LIJ A;  4LFC H;  3FAU A;  1I94 H;  1ZZI A;  4DUY H;  2LF0 A;  4LFA H;  2ANN A;  4X65 H;  3KDK A;  1SEI A;  4QMF B;  2LTL A;  4OX9 H;  3V69 A;  1J5E H;  1N34 H;  2K1H A;  4DR5 H;  2AXY A;  2JE6 I;  4JI0 H;  4X64 H;  2A1S A;  1XMO H;  4KHP H;  2JA9 A;  1HNZ H;  4LF5 H;  4JI3 H;  4FJS A;  2PY9 A;  2CTK A;  4FJU A;  4YHH H;  1XRH A;  1VBI A;  3T1H H;  2OPU A;  4LF6 H;  1XNR H;  1AN7 A;  1ODH A;  2CTF A;  1Z2I A;  3UOE A;  2PQU A;  1HNW H;  5K36 G;  1MSZ A;  3JAM W;  1IBK H;  5IT9 W;  4WAN A;  4BA1 I;  1PQX A;  3KDG A;  2UXD H;  2JZX A;  4PDB A;  4AQY H;  2P2R A;  4DV2 H;  1F0X A;  4GKK H;  1ZZJ A;  4DR2 H;  3GKU A;  2CTL A;  3EZJ A;  3GR5 A;  4OCH A;  1DTJ A;  5DT9 A;  2FMR A;  4DV3 H;  4B3T H;  4JI4 H;  2M8W A;  4IFD G;  1X9Z A;  4B3R H;  2DGR A;  1IBM H;  4NXM H;  4DR1 H;  2ZM6 H;  1J5K A;  3OTO H;  4JI1 H;  2CTM A;  4JV5 H;  4JI6 H;  4JYA H;  1X4N A;  5LMN H;  4OO1 G;  2G8Y A;  2E3U A;  2Y3M A;  1UG8 A;  2F4V H;  4DR7 H;  2UXC H;  3GAB A;  2UUA H;  1X0A A;  2VKC A;  4G08 A;  4DV6 H;  1ZTG A;  1XNQ H;  2JEA I;  1HR0 H;  2PT7 G;  4DR3 H;  4DV1 H;  1WHR A;  1WTJ A;  1FKA H;  4X66 H;  4DR4 H;  4NZT M;  4DV7 H;  4NBQ A;  2CWH A;  4LF8 H;  2HH2 A;  3VKE A;  2UXB H;  1DT4 A;  1VIH A;  2MJH A;  4B8C D;  4OD6 A;  3J80 W;  4WAL A;  1N32 H;  4DR6 H;  1S20 A;  1X4M A;  4E9J A;  4LF7 H;  3QD7 X;  3I0P A;  2UUC H;  4DV0 H;  4BA2 I;  4B3M H;  1ZZK A;  3U1K A;  4JI7 H;  4AIM A;  2FPH X;  2NN6 G;  5LMU H;  4DV4 H;  4NXN H;  3J7A K;  2BA0 A;  5C0X G;  2UU9 H;  2X06 A;  4K0K H;  1WVN A;  2Z0S A;  4JI8 H;  4LFB H;  4JVY A;  2D9I A;  5LL6 b;  2CPQ A;  2YQR A;  4B3S H;  1S03 G;  2ZQE A;  2M6Q A;  1N33 H;  3AEV B;  1J4W A;  4LF9 H;  1EC6 A;  5BR8 H; 
#chains in the Genus database with same CATH homology
 1ZZJ A;  4QMF B;  2JEB I;  2QND A;  4NBQ A;  3V69 A;  2HH2 A;  1WE8 A;  2CTL A;  1DT4 A;  3VKE A;  1VIH A;  4AM3 A;  2MJH A;  1DTJ A;  2CTE A;  2FMR A;  1KHM A;  2AXY A;  4IFD G;  2JE6 I;  2DGR A;  4WAL A;  3L7Z C;  5JEA G;  1X4M A;  1J5K A;  2CTM A;  2BL5 A;  2JA9 A;  4JVH A;  1X4N A;  2OPV A;  4BA2 I;  1ZZK A;  3U1K A;  4B8T A;  2CTK A;  2PY9 A;  2E3U A;  4AIM A;  2NN6 G;  2HH3 A;  4OO1 G;  2BA0 A;  2JVZ A;  2OPU A;  5C0X G;  1K1G A;  2CTF A;  1WVN A;  1VIG A;  2PQU A;  2Z0S A;  1ZTG A;  5K36 G;  2CTJ A;  4JVY A;  2CPQ A;  1TUA A;  2YQR A;  2JEA I;  4BA1 I;  4LIJ A;  2ANR A;  4WAN A;  3AEV B;  1ZZI A;  2JZX A;  1J4W A;  2P2R A;  1EC6 A;  2ANN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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