2E3UA

Crystal structure analysis of dim2p from pyrococcus horikoshii ot3
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
172
structure length
166
Chain Sequence
KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLERR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Dim2p: a preribosomal RNA processing factor, from Pyrococcus horikoshii OT3 at 2.30 A
pubmed doi rcsb
molecule tags Rna binding protein
source organism Pyrococcus horikoshii
molecule keywords Hypothetical protein PH1566
total genus 56
structure length 166
sequence length 172
ec nomenclature
pdb deposition date 2006-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2e3uA01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2e3uA02
2NN6G 4LIJA 4BA2I 2JA9A 2CTLA 4OO1G 5K36G 1ZZJA 2MJHA 1J4WA 2BL5A 4IFDG 2OPVA 1J5KA 1TUAA 2CPQA 2CTMA 1DT4A 4AIMA 5C0XG 2OPUA 1ZZIA 2ANRA 2JEBI 2PY9A 3AEVB 1EC6A 2DGRA 1ZZKA 1WE8A 1DTJA 3VKEA 2JZXA 2JE6I 1X4MA 2JEAI 4BA1I 4AM3A 3L7ZC 1K1GA 4JVHA 4WALA 2CTFA 2E3UA 2BA0A 1ZTGA 2Z0SA 2ANNA 1WVNA 2HH2A 1VIGA 2CTEA 2CTKA 2QNDA 2JVZA 2FMRA 2YQRA 4QMFB 4B8TA 2CTJA 3V69A 2AXYA 2HH3A 2PQUA 1VIHA 4JVYA 5JEAG 1KHMA 3U1KA 2P2RA 4WANA 4NBQA 1X4NA
chains in the Genus database with same CATH superfamily
4JI6H 1N36H 4LIJA 4BA2I 2K1HA 3JAMW 1ZZJA 2CWHA 3J81W 2BL5A 4IFDG 1F0XA 4JI2H 3KDKA 1DT4A 3SB1A 1XMQH 2OPUA 2PY9A 3EZJA 2JEBI 4G08A 1HR0H 2UUCH 1UG8A 2UXBH 2JZXA 4DUYH 4NZRM 1X4MA 1XMOH 1MSZA 3KDGA 3L7ZC 2CTFA 2G8YA 5LMNH 2ZQEA 4DV0H 2LTMA 1HNWH 1S20A 4DR2H 5LMUH 2JVZA 3NCVA 4QMFB 4DV2H 4B8TA 4JVYA 2HH3A 2P2RA 4YY3H 1DTJA 4DV7H 2F4VH 4GKKH 2E5LH 3I0PA 4JV5H 4FJSA 2JA9A 2CTLA 1N32H 4LFCH 2MJHA 2ZM6H 1FJGH 5FLXW 5BR8H 4JI8H 4NXNH 1XNRH 1J5KA 4AIMA 1ZZIA 2UXDH 1I94H 1XRHA 4DV4H 4B3RH 4JI3H 1WE8A 4X65H 4JVHA 4AM3A 3GKUA 3QD7X 2E3UA 4WALA 4DV1H 4AQYH 4DR7H 2HH2A 4X64H 2CTEA 2QNDA 4JI5H 5IWAH 4E9JA 1ODHA 2CTJA 5DT9A 1S03G 4LFBH 4JI1H 4LF8H 1J5EH 4DR4H 4NZTM 3UOEA 4DV3H 4NBQA 4LF4H 4LF7H 2D9IA 4K0KH 4B3TH 1PQXA 2X06A 4DR6H 4LF6H 3T1HH 3J80W 2FPHX 4DR1H 1TUAA 4H8AA 2VQFH 3T1YH 1HNZH 4JI0H 5C0XG 2ANRA 1EC6A 3OETA 1X9ZA 2CPMA 2DGRA 4LF9H 1ZZKA 1IBMH 2LRRA 3VKEA 1FKAH 1X0AA 1N34H 2JEAI 2VKCA 4BA1I 1NXUA 1K1GA 4OD6A 1IBLH 1XNQH 4GKJH 4EC5A 2PT7G 1SEIA 2ANNA 1VIGA 4OCHA 4DV5H 4B8CD 3RF2A 4FJUA 2Y3MA 3V69A 4X62H 2PQUA 4OX9H 3OTOH 1WTJA 3U1KA 4JI4H 2CWFA 1ZTGA 4B3SH 4B3MH 2NN6G 2LTLA 1AN7A 2A1SA 3GABA 5K36G 4OO1G 4DR5H 1I6UA 1J4WA 2UUAH 1WHRA 2OPVA 2UUBH 2CPQA 2CTMA 5A2QW 5IT9W 4DUZH 4LF5H 1IBKH 4NXMH 3AEVB 4KHPH 1Z2IA 3OSSD 2M8WA 2JE6I 3J7AK 2O4CA 4YHHH 2M6QA 1HNXH 4X66H 2UU9H 2BA0A 2Z0SA 2HHHH 1WVNA 4JYAH 2CTKA 1VBIA 4DV6H 2FMRA 2YQRA 2LF0A 3GR5A 2AXYA 1N33H 1V9NA 2UXCH 1VIHA 1V8CA 5LL6b 4LFAH 5JEAG 4DR3H 4JI7H 4PDBA 4WANA 1KHMA 3FAUA 2VQEH 1X4NA 2FFMA
chains in the Genus database with same CATH topology
2NN6G 4LIJA 4BA2I 2JA9A 2CTLA 4OO1G 5K36G 1ZZJA 2MJHA 1J4WA 2BL5A 4IFDG 2OPVA 1J5KA 1TUAA 2CPQA 2CTMA 1DT4A 4AIMA 5C0XG 2OPUA 1ZZIA 2ANRA 2JEBI 2PY9A 3AEVB 1EC6A 2DGRA 1ZZKA 1WE8A 1DTJA 3VKEA 2JZXA 2JE6I 1X4MA 2JEAI 4BA1I 4AM3A 3L7ZC 1K1GA 4JVHA 4WALA 2CTFA 2E3UA 2BA0A 1ZTGA 2Z0SA 2ANNA 1WVNA 2HH2A 1VIGA 2CTEA 2CTKA 2QNDA 2JVZA 2FMRA 2YQRA 4QMFB 4B8TA 2CTJA 3V69A 2AXYA 2HH3A 2PQUA 1VIHA 4JVYA 5JEAG 1KHMA 3U1KA 2P2RA 4WANA 4NBQA 1X4NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NN6 G;  4LIJ A;  4BA2 I;  2JA9 A;  2CTL A;  4OO1 G;  5K36 G;  1ZZJ A;  2MJH A;  1J4W A;  2BL5 A;  4IFD G;  2OPV A;  1J5K A;  1TUA A;  2CPQ A;  2CTM A;  1DT4 A;  4AIM A;  5C0X G;  2OPU A;  1ZZI A;  2ANR A;  2JEB I;  2PY9 A;  3AEV B;  1EC6 A;  2DGR A;  1ZZK A;  1WE8 A;  1DTJ A;  3VKE A;  2JZX A;  2JE6 I;  1X4M A;  2JEA I;  4BA1 I;  4AM3 A;  3L7Z C;  1K1G A;  4JVH A;  4WAL A;  2CTF A;  2E3U A;  2BA0 A;  1ZTG A;  2Z0S A;  2ANN A;  1WVN A;  2HH2 A;  1VIG A;  2CTE A;  2CTK A;  2QND A;  2JVZ A;  2FMR A;  2YQR A;  4QMF B;  4B8T A;  2CTJ A;  3V69 A;  2AXY A;  2HH3 A;  2PQU A;  1VIH A;  4JVY A;  5JEA G;  1KHM A;  3U1K A;  2P2R A;  4WAN A;  4NBQ A;  1X4N A; 
#chains in the Genus database with same CATH topology
 4JI6 H;  1N36 H;  4LIJ A;  4BA2 I;  2K1H A;  3JAM W;  1ZZJ A;  2CWH A;  3J81 W;  2BL5 A;  4IFD G;  1F0X A;  4JI2 H;  3KDK A;  1DT4 A;  3SB1 A;  1XMQ H;  2OPU A;  2PY9 A;  3EZJ A;  2JEB I;  4G08 A;  1HR0 H;  2UUC H;  1UG8 A;  2UXB H;  2JZX A;  4DUY H;  4NZR M;  1X4M A;  1XMO H;  1MSZ A;  3KDG A;  3L7Z C;  2CTF A;  2G8Y A;  5LMN H;  2ZQE A;  4DV0 H;  2LTM A;  1HNW H;  1S20 A;  4DR2 H;  5LMU H;  2JVZ A;  3NCV A;  4QMF B;  4DV2 H;  4B8T A;  4JVY A;  2HH3 A;  2P2R A;  4YY3 H;  1DTJ A;  4DV7 H;  2F4V H;  4GKK H;  2E5L H;  3I0P A;  4JV5 H;  4FJS A;  2JA9 A;  2CTL A;  1N32 H;  4LFC H;  2MJH A;  2ZM6 H;  1FJG H;  5FLX W;  5BR8 H;  4JI8 H;  4NXN H;  1XNR H;  1J5K A;  4AIM A;  1ZZI A;  2UXD H;  1I94 H;  1XRH A;  4DV4 H;  4B3R H;  4JI3 H;  1WE8 A;  4X65 H;  4JVH A;  4AM3 A;  3GKU A;  3QD7 X;  2E3U A;  4WAL A;  4DV1 H;  4AQY H;  4DR7 H;  2HH2 A;  4X64 H;  2CTE A;  2QND A;  4JI5 H;  5IWA H;  4E9J A;  1ODH A;  2CTJ A;  5DT9 A;  1S03 G;  4LFB H;  4JI1 H;  4LF8 H;  1J5E H;  4DR4 H;  4NZT M;  3UOE A;  4DV3 H;  4NBQ A;  4LF4 H;  4LF7 H;  2D9I A;  4K0K H;  4B3T H;  1PQX A;  2X06 A;  4DR6 H;  4LF6 H;  3T1H H;  3J80 W;  2FPH X;  4DR1 H;  1TUA A;  4H8A A;  2VQF H;  3T1Y H;  1HNZ H;  4JI0 H;  5C0X G;  2ANR A;  1EC6 A;  3OET A;  1X9Z A;  2CPM A;  2DGR A;  4LF9 H;  1ZZK A;  1IBM H;  2LRR A;  3VKE A;  1FKA H;  1X0A A;  1N34 H;  2JEA I;  2VKC A;  4BA1 I;  1NXU A;  1K1G A;  4OD6 A;  1IBL H;  1XNQ H;  4GKJ H;  4EC5 A;  2PT7 G;  1SEI A;  2ANN A;  1VIG A;  4OCH A;  4DV5 H;  4B8C D;  3RF2 A;  4FJU A;  2Y3M A;  3V69 A;  4X62 H;  2PQU A;  4OX9 H;  3OTO H;  1WTJ A;  3U1K A;  4JI4 H;  2CWF A;  1ZTG A;  4B3S H;  4B3M H;  2NN6 G;  2LTL A;  1AN7 A;  2A1S A;  3GAB A;  5K36 G;  4OO1 G;  4DR5 H;  1I6U A;  1J4W A;  2UUA H;  1WHR A;  2OPV A;  2UUB H;  2CPQ A;  2CTM A;  5A2Q W;  5IT9 W;  4DUZ H;  4LF5 H;  1IBK H;  4NXM H;  3AEV B;  4KHP H;  1Z2I A;  3OSS D;  2M8W A;  2JE6 I;  3J7A K;  2O4C A;  4YHH H;  2M6Q A;  1HNX H;  4X66 H;  2UU9 H;  2BA0 A;  2Z0S A;  2HHH H;  1WVN A;  4JYA H;  2CTK A;  1VBI A;  4DV6 H;  2FMR A;  2YQR A;  2LF0 A;  3GR5 A;  2AXY A;  1N33 H;  1V9N A;  2UXC H;  1VIH A;  1V8C A;  5LL6 b;  4LFA H;  5JEA G;  4DR3 H;  4JI7 H;  4PDB A;  4WAN A;  1KHM A;  3FAU A;  2VQE H;  1X4N A;  2FFM A; 
#chains in the Genus database with same CATH homology
 2NN6 G;  4LIJ A;  4BA2 I;  2JA9 A;  2CTL A;  4OO1 G;  5K36 G;  1ZZJ A;  2MJH A;  1J4W A;  2BL5 A;  4IFD G;  2OPV A;  1J5K A;  1TUA A;  2CPQ A;  2CTM A;  1DT4 A;  4AIM A;  5C0X G;  2OPU A;  1ZZI A;  2ANR A;  2JEB I;  2PY9 A;  3AEV B;  1EC6 A;  2DGR A;  1ZZK A;  1WE8 A;  1DTJ A;  3VKE A;  2JZX A;  2JE6 I;  1X4M A;  2JEA I;  4BA1 I;  4AM3 A;  3L7Z C;  1K1G A;  4JVH A;  4WAL A;  2CTF A;  2E3U A;  2BA0 A;  1ZTG A;  2Z0S A;  2ANN A;  1WVN A;  2HH2 A;  1VIG A;  2CTE A;  2CTK A;  2QND A;  2JVZ A;  2FMR A;  2YQR A;  4QMF B;  4B8T A;  2CTJ A;  3V69 A;  2AXY A;  2HH3 A;  2PQU A;  1VIH A;  4JVY A;  5JEA G;  1KHM A;  3U1K A;  2P2R A;  4WAN A;  4NBQ A;  1X4N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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