The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
56
|
sequence length |
172
|
structure length |
166
|
Chain Sequence |
KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLERR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of Dim2p: a preribosomal RNA processing factor, from Pyrococcus horikoshii OT3 at 2.30 A
pubmed doi rcsb |
| molecule tags |
Rna binding protein
|
| source organism |
Pyrococcus horikoshii
|
| molecule keywords |
Hypothetical protein PH1566
|
| total genus |
56
|
| structure length |
166
|
| sequence length |
172
|
| ec nomenclature | |
| pdb deposition date | 2006-11-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00013 | KH_1 | KH domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | K Homology domain, type 1 | ||
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | K Homology domain, type 1 |
#chains in the Genus database with same CATH superfamily 2FMR A; 3U1K A; 4IFD G; 4BA2 I; 1ZZI A; 2HH2 A; 1DT4 A; 3AEV B; 1WE8 A; 4AIM A; 1WVN A; 4NBQ A; 2JZX A; 2QND A; 1TUA A; 2E3U A; 1DTJ A; 2ANR A; 4WAL A; 2DGR A; 2JEB I; 2AXY A; 4BA1 I; 2CTK A; 2CTF A; 2OPU A; 1ZZK A; 2JA9 A; 2YQR A; 1J5K A; 1J4W A; 2CTJ A; 4B8T A; 2PY9 A; 2CTL A; 3V69 A; 2MJH A; 2P2R A; 4JVH A; 4LIJ A; 2BL5 A; 2CTE A; 2JVZ A; 4JVY A; 1VIH A; 4AM3 A; 2JE6 I; 1VIG A; 2OPV A; 2CTM A; 2HH3 A; 4QMF B; 5JEA G; 3VKE A; 2ANN A; 2JEA I; 2CPQ A; 1EC6 A; 1K1G A; 1KHM A; 1ZTG A; 4WAN A; 5C0X G; 4OO1 G; 2PQU A; 1X4M A; 1X4N A; 2Z0S A; 1ZZJ A; 2BA0 A; 2NN6 G; 3L7Z C; 5K36 G; #chains in the Genus database with same CATH topology 3U1K A; 3UOE A; 1X0A A; 3JAM W; 2QND A; 4E9J A; 1TUA A; 2CPM A; 5LL6 b; 4DR2 H; 2ANR A; 2UXD H; 4NZT M; 2JEB I; 2LRR A; 4JI8 H; 1F0X A; 2CTJ A; 4DV3 H; 2CTL A; 3J7A K; 4JI1 H; 4B8C D; 4LFC H; 4DV6 H; 4DUZ H; 1IBM H; 3I0P A; 4FJS A; 4NXM H; 2CTE A; 4AM3 A; 2LF0 A; 2OPV A; 3NCV A; 2ANN A; 2HH3 A; 5JEA G; 4JI2 H; 4DV4 H; 4DV5 H; 4GKJ H; 2CPQ A; 4OD6 A; 1KHM A; 1ZTG A; 4DR1 H; 3GKU A; 5C0X G; 4OO1 G; 4PDB A; 1Z2I A; 4DV2 H; 4LF4 H; 1ZZJ A; 4DR6 H; 3KDG A; 1X9Z A; 4JI5 H; 4DUY H; 4JI3 H; 4BA2 I; 1FKA H; 4EC5 A; 4YHH H; 2ZQE A; 3RF2 A; 3J80 W; 4AIM A; 2D9I A; 2JZX A; 1N36 H; 3OET A; 3FAU A; 2UUC H; 2UUB H; 4LF8 H; 4DV7 H; 5IT9 W; 2CTK A; 1N33 H; 1XMO H; 2OPU A; 1ZZK A; 1J5K A; 1J4W A; 4B8T A; 2A1S A; 1XMQ H; 5LMU H; 2UU9 H; 2K1H A; 3GAB A; 5A2Q W; 4LIJ A; 2BL5 A; 1WHR A; 3QD7 X; 2FFM A; 2CTM A; 3VKE A; 1N34 H; 2JEA I; 3SB1 A; 3J81 W; 1XNQ H; 1I6U A; 1MSZ A; 5IWA H; 5LMN H; 1K1G A; 4DR7 H; 4WAN A; 2F4V H; 1FJG H; 2LTM A; 1X4N A; 1S03 G; 2CWF A; 4DV1 H; 1NXU A; 2VQE H; 4G08 A; 4B3S H; 3L7Z C; 2M6Q A; 2PT7 G; 4JYA H; 2UXB H; 4H8A A; 2X06 A; 4OX9 H; 1ZZI A; 4NXN H; 1SEI A; 4AQY H; 1VBI A; 1J5E H; 4NBQ A; 4DV0 H; 3T1H H; 2E5L H; 1DTJ A; 2VKC A; 4YY3 H; 4X64 H; 2AXY A; 4DR4 H; 2UUA H; 4GKK H; 4BA1 I; 4LF6 H; 2CTF A; 4DR3 H; 2JA9 A; 2VQF H; 4LF9 H; 2HHH H; 2PY9 A; 3V69 A; 1ODH A; 1S20 A; 3EZJ A; 2P2R A; 2Y3M A; 4X66 H; 4KHP H; 2FPH X; 1WTJ A; 2JVZ A; 4X62 H; 4JVY A; 4JI4 H; 4FJU A; 4QMF B; 5DT9 A; 1I94 H; 1EC6 A; 2CWH A; 4JV5 H; 3OTO H; 4OCH A; 2PQU A; 3KDK A; 4X65 H; 5FLX W; 1V8C A; 2BA0 A; 2ZM6 H; 4LF7 H; 2M8W A; 5K36 G; 2FMR A; 1HNX H; 4B3T H; 4JI7 H; 4IFD G; 2HH2 A; 1DT4 A; 1V9N A; 4LFA H; 3AEV B; 1WE8 A; 4DR5 H; 1HNW H; 4JI6 H; 1WVN A; 4B3M H; 4JI0 H; 4K0K H; 2E3U A; 1IBK H; 4WAL A; 2DGR A; 4LFB H; 1N32 H; 5BR8 H; 2YQR A; 4B3R H; 1XNR H; 3GR5 A; 2MJH A; 2G8Y A; 4JVH A; 1HNZ H; 1PQX A; 2UXC H; 1UG8 A; 1VIH A; 2JE6 I; 1VIG A; 4NZR M; 1HR0 H; 1XRH A; 3T1Y H; 2O4C A; 1X4M A; 4LF5 H; 3OSS D; 2Z0S A; 1AN7 A; 1IBL H; 2NN6 G; 2LTL A; #chains in the Genus database with same CATH homology 2FMR A; 3U1K A; 4IFD G; 4BA2 I; 1ZZI A; 2HH2 A; 1DT4 A; 3AEV B; 1WE8 A; 4AIM A; 1WVN A; 4NBQ A; 2JZX A; 2QND A; 1TUA A; 2E3U A; 1DTJ A; 2ANR A; 4WAL A; 2DGR A; 2JEB I; 2AXY A; 4BA1 I; 2CTK A; 2CTF A; 2OPU A; 1ZZK A; 2JA9 A; 2YQR A; 1J5K A; 1J4W A; 2CTJ A; 4B8T A; 2PY9 A; 2CTL A; 3V69 A; 2MJH A; 2P2R A; 4JVH A; 4LIJ A; 2BL5 A; 2CTE A; 2JVZ A; 4JVY A; 1VIH A; 4AM3 A; 2JE6 I; 1VIG A; 2OPV A; 2CTM A; 2HH3 A; 4QMF B; 5JEA G; 3VKE A; 2ANN A; 2JEA I; 2CPQ A; 1EC6 A; 1K1G A; 1KHM A; 1ZTG A; 4WAN A; 5C0X G; 4OO1 G; 2PQU A; 1X4M A; 1X4N A; 2Z0S A; 1ZZJ A; 2BA0 A; 2NN6 G; 3L7Z C; 5K36 G;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
