2FMRA

Kh1 from the fragile x protein fmr1, nmr, 18 structures
Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
65
structure length
65
Chain Sequence
ASRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (12-14)TIV2 (14-17)TIV3 (18-21)TIV4 (21-24)AH1 (25-31)TIV5 (32-35)AH2 (54-64)EMPTYS1 (4-9)S3 (46-51)S2 (35-41)Updating...
connected with : NaN
molecule tags Rna binding protein
source organism Homo sapiens
publication title The solution structure of the first KH domain of FMR1, the protein responsible for the fragile X syndrome.
pubmed doi rcsb
molecule keywords FMR1 PROTEIN
total genus 8
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 1997-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2fmrA00
2HH3A 2CTJA 4WALA 1DTJA 2DGRA 1VIHA 2YQRA 5JEAG 3L7ZC 1KHMA 4JVHA 2MJHA 2JVZA 4AIMA 4OO1G 1ZZKA 2JA9A 2OPUA 4BA2I 2QNDA 3AEVB 1ZZJA 1X4NA 2ANNA 1J4WA 2JE6I 4WANA 3VKEA 1ZZIA 2JZXA 2PQUA 4NBQA 1WVNA 2P2RA 2PY9A 4AM3A 2CTKA 4BA1I 1EC6A 2HH2A 4LIJA 2E3UA 2BA0A 2FMRA 1X4MA 4B8TA 2CPQA 2ANRA 3U1KA 1VIGA 1DT4A 2OPVA 2JEAI 1WE8A 2Z0SA 2CTFA 1TUAA 4JVYA 5C0XG 2BL5A 2CTEA 1ZTGA 2AXYA 2NN6G 4QMFB 1K1GA 5K36G 3V69A 2JEBI 4IFDG 2CTLA 1J5KA 2CTMA
chains in the Genus database with same CATH superfamily
2HH3A 4WALA 4YY3H 4NXNH 2PT7G 2M6QA 2YQRA 5A2QW 5JEAG 4JI7H 1KHMA 1FJGH 1V8CA 5DT9A 2CWFA 2JVZA 2LRRA 3NCVA 4AIMA 2ZM6H 1HNWH 5LMNH 4OO1G 4BA2I 4DV2H 4LFAH 3KDGA 1WTJA 2UU9H 3AEVB 4JYAH 2K1HA 1ZZIA 4G08A 4AM3A 2PQUA 1XNQH 1N32H 4DR6H 4NXMH 4JI4H 4LF5H 1UG8A 4DV5H 2FMRA 2Y3MA 1N36H 1VIGA 1WE8A 2VKCA 2Z0SA 4EC5A 1IBMH 4JI5H 4JV5H 5C0XG 4E9JA 4B3MH 2NN6G 4LFBH 2UXDH 4NZRM 4JI3H 2VQFH 2JEBI 2CPQA 1J5KA 4B3TH 4X66H 4DV6H 2DGRA 3OSSD 2FFMA 3UOEA 3QD7X 3T1HH 2MJHA 3GR5A 1XMQH 4JI8H 4GKKH 2JA9A 1NXUA 1X9ZA 2OPUA 4FJSA 1S03G 3GABA 4FJUA 4X62H 3GKUA 1J4WA 4WANA 2JZXA 4DR3H 4DV3H 4JI0H 2CTKA 1XMOH 4DUYH 4PDBA 4X64H 4DUZH 3I0PA 1X4MA 3U1KA 2A1SA 3J7AK 1DT4A 4LF6H 1I6UA 2CTFA 1XNRH 1N33H 2BL5A 4H8AA 2CTEA 1ZTGA 2CWHA 1AN7A 1K1GA 4QMFB 4KHPH 3V69A 1F0XA 1VIHA 2CTMA 3JAMW 2UUAH 2CPMA 2CTJA 1DTJA 2FPHX 4DR2H 2HHHH 1V9NA 5FLXW 2X06A 4JVHA 4DR4H 3T1YH 4K0KH 1XRHA 2F4VH 2M8WA 4DR1H 3KDKA 4OX9H 1ZZJA 4GKJH 4B3SH 3OETA 3OTOH 4DR5H 1ODHA 2JE6I 2PY9A 3EZJA 1WVNA 2O4CA 1HR0H 2E5LH 4OCHA 1VBIA 2HH2A 1EC6A 1IBLH 2E3UA 1Z2IA 2BA0A 2ANRA 2LTLA 2D9IA 4DV1H 1HNZH 3J81W 2JEAI 1IBKH 4NZTM 2VQEH 4JI6H 4JI2H 3SB1A 2AXYA 5K36G 4LF7H 4X65H 5LMUH 1N34H 2UXCH 1X0AA 1HNXH 2CTLA 4LF4H 1S20A 4AQYH 4JI1H 3L7ZC 4OD6A 4LF8H 1PQXA 4DR7H 1ZZKA 1I94H 2QNDA 1SEIA 2ZQEA 1X4NA 2UUCH 2ANNA 3VKEA 1MSZA 4DV4H 4IFDG 4NBQA 2P2RA 5IT9W 4BA1I 4LFCH 5BR8H 4LIJA 1J5EH 4DV7H 4B8CD 4B8TA 5LL6b 5IWAH 4YHHH 3FAUA 1WHRA 2OPVA 2G8YA 2UXBH 1FKAH 1TUAA 4JVYA 2LF0A 3RF2A 3J80W 4LF9H 4B3RH 2LTMA 2UUBH 4DV0H
chains in the Genus database with same CATH topology
2HH3A 2CTJA 4WALA 1DTJA 2DGRA 1VIHA 2YQRA 5JEAG 3L7ZC 1KHMA 4JVHA 2MJHA 2JVZA 4AIMA 4OO1G 1ZZKA 2JA9A 2OPUA 4BA2I 2QNDA 3AEVB 1ZZJA 1X4NA 2ANNA 1J4WA 2JE6I 4WANA 3VKEA 1ZZIA 2JZXA 2PQUA 4NBQA 1WVNA 2P2RA 2PY9A 4AM3A 2CTKA 4BA1I 1EC6A 2HH2A 4LIJA 2E3UA 2BA0A 2FMRA 1X4MA 4B8TA 2CPQA 2ANRA 3U1KA 1VIGA 1DT4A 2OPVA 2JEAI 1WE8A 2Z0SA 2CTFA 1TUAA 4JVYA 5C0XG 2BL5A 2CTEA 1ZTGA 2AXYA 2NN6G 4QMFB 1K1GA 5K36G 3V69A 2JEBI 4IFDG 2CTLA 1J5KA 2CTMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HH3 A;  2CTJ A;  4WAL A;  1DTJ A;  2DGR A;  1VIH A;  2YQR A;  5JEA G;  3L7Z C;  1KHM A;  4JVH A;  2MJH A;  2JVZ A;  4AIM A;  4OO1 G;  1ZZK A;  2JA9 A;  2OPU A;  4BA2 I;  2QND A;  3AEV B;  1ZZJ A;  1X4N A;  2ANN A;  1J4W A;  2JE6 I;  4WAN A;  3VKE A;  1ZZI A;  2JZX A;  2PQU A;  4NBQ A;  1WVN A;  2P2R A;  2PY9 A;  4AM3 A;  2CTK A;  4BA1 I;  1EC6 A;  2HH2 A;  4LIJ A;  2E3U A;  2BA0 A;  2FMR A;  1X4M A;  4B8T A;  2CPQ A;  2ANR A;  3U1K A;  1VIG A;  1DT4 A;  2OPV A;  2JEA I;  1WE8 A;  2Z0S A;  2CTF A;  1TUA A;  4JVY A;  5C0X G;  2BL5 A;  2CTE A;  1ZTG A;  2AXY A;  2NN6 G;  4QMF B;  1K1G A;  5K36 G;  3V69 A;  2JEB I;  4IFD G;  2CTL A;  1J5K A;  2CTM A; 
#chains in the Genus database with same CATH topology
 2HH3 A;  4WAL A;  4YY3 H;  4NXN H;  2PT7 G;  2M6Q A;  2YQR A;  5A2Q W;  5JEA G;  4JI7 H;  1KHM A;  1FJG H;  1V8C A;  5DT9 A;  2CWF A;  2JVZ A;  2LRR A;  3NCV A;  4AIM A;  2ZM6 H;  1HNW H;  5LMN H;  4OO1 G;  4BA2 I;  4DV2 H;  4LFA H;  3KDG A;  1WTJ A;  2UU9 H;  3AEV B;  4JYA H;  2K1H A;  1ZZI A;  4G08 A;  4AM3 A;  2PQU A;  1XNQ H;  1N32 H;  4DR6 H;  4NXM H;  4JI4 H;  4LF5 H;  1UG8 A;  4DV5 H;  2FMR A;  2Y3M A;  1N36 H;  1VIG A;  1WE8 A;  2VKC A;  2Z0S A;  4EC5 A;  1IBM H;  4JI5 H;  4JV5 H;  5C0X G;  4E9J A;  4B3M H;  2NN6 G;  4LFB H;  2UXD H;  4NZR M;  4JI3 H;  2VQF H;  2JEB I;  2CPQ A;  1J5K A;  4B3T H;  4X66 H;  4DV6 H;  2DGR A;  3OSS D;  2FFM A;  3UOE A;  3QD7 X;  3T1H H;  2MJH A;  3GR5 A;  1XMQ H;  4JI8 H;  4GKK H;  2JA9 A;  1NXU A;  1X9Z A;  2OPU A;  4FJS A;  1S03 G;  3GAB A;  4FJU A;  4X62 H;  3GKU A;  1J4W A;  4WAN A;  2JZX A;  4DR3 H;  4DV3 H;  4JI0 H;  2CTK A;  1XMO H;  4DUY H;  4PDB A;  4X64 H;  4DUZ H;  3I0P A;  1X4M A;  3U1K A;  2A1S A;  3J7A K;  1DT4 A;  4LF6 H;  1I6U A;  2CTF A;  1XNR H;  1N33 H;  2BL5 A;  4H8A A;  2CTE A;  1ZTG A;  2CWH A;  1AN7 A;  1K1G A;  4QMF B;  4KHP H;  3V69 A;  1F0X A;  1VIH A;  2CTM A;  3JAM W;  2UUA H;  2CPM A;  2CTJ A;  1DTJ A;  2FPH X;  4DR2 H;  2HHH H;  1V9N A;  5FLX W;  2X06 A;  4JVH A;  4DR4 H;  3T1Y H;  4K0K H;  1XRH A;  2F4V H;  2M8W A;  4DR1 H;  3KDK A;  4OX9 H;  1ZZJ A;  4GKJ H;  4B3S H;  3OET A;  3OTO H;  4DR5 H;  1ODH A;  2JE6 I;  2PY9 A;  3EZJ A;  1WVN A;  2O4C A;  1HR0 H;  2E5L H;  4OCH A;  1VBI A;  2HH2 A;  1EC6 A;  1IBL H;  2E3U A;  1Z2I A;  2BA0 A;  2ANR A;  2LTL A;  2D9I A;  4DV1 H;  1HNZ H;  3J81 W;  2JEA I;  1IBK H;  4NZT M;  2VQE H;  4JI6 H;  4JI2 H;  3SB1 A;  2AXY A;  5K36 G;  4LF7 H;  4X65 H;  5LMU H;  1N34 H;  2UXC H;  1X0A A;  1HNX H;  2CTL A;  4LF4 H;  1S20 A;  4AQY H;  4JI1 H;  3L7Z C;  4OD6 A;  4LF8 H;  1PQX A;  4DR7 H;  1ZZK A;  1I94 H;  2QND A;  1SEI A;  2ZQE A;  1X4N A;  2UUC H;  2ANN A;  3VKE A;  1MSZ A;  4DV4 H;  4IFD G;  4NBQ A;  2P2R A;  5IT9 W;  4BA1 I;  4LFC H;  5BR8 H;  4LIJ A;  1J5E H;  4DV7 H;  4B8C D;  4B8T A;  5LL6 b;  5IWA H;  4YHH H;  3FAU A;  1WHR A;  2OPV A;  2G8Y A;  2UXB H;  1FKA H;  1TUA A;  4JVY A;  2LF0 A;  3RF2 A;  3J80 W;  4LF9 H;  4B3R H;  2LTM A;  2UUB H;  4DV0 H; 
#chains in the Genus database with same CATH homology
 2HH3 A;  2CTJ A;  4WAL A;  1DTJ A;  2DGR A;  1VIH A;  2YQR A;  5JEA G;  3L7Z C;  1KHM A;  4JVH A;  2MJH A;  2JVZ A;  4AIM A;  4OO1 G;  1ZZK A;  2JA9 A;  2OPU A;  4BA2 I;  2QND A;  3AEV B;  1ZZJ A;  1X4N A;  2ANN A;  1J4W A;  2JE6 I;  4WAN A;  3VKE A;  1ZZI A;  2JZX A;  2PQU A;  4NBQ A;  1WVN A;  2P2R A;  2PY9 A;  4AM3 A;  2CTK A;  4BA1 I;  1EC6 A;  2HH2 A;  4LIJ A;  2E3U A;  2BA0 A;  2FMR A;  1X4M A;  4B8T A;  2CPQ A;  2ANR A;  3U1K A;  1VIG A;  1DT4 A;  2OPV A;  2JEA I;  1WE8 A;  2Z0S A;  2CTF A;  1TUA A;  4JVY A;  5C0X G;  2BL5 A;  2CTE A;  1ZTG A;  2AXY A;  2NN6 G;  4QMF B;  1K1G A;  5K36 G;  3V69 A;  2JEB I;  4IFD G;  2CTL A;  1J5K A;  2CTM A; 
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similar chains in the pdb database (?% sequence similarity)

 
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