2JZX | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	160
structure length	160
Chain Sequence	KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLET

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rna binding protein
source organism	Homo sapiens
publication title	Structure of the first and second KH domains of human poly-C binding protein-2 reveals insights into its regulatory mechanisms rcsb
molecule keywords	Poly(rC)-binding protein 2
total genus	40
structure length	160
sequence length	160
ec nomenclature
pdb deposition date	2008-01-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	2jzxA01
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	2jzxA02

1ZZKA 2QNDA 4AM3A 2JA9A 2JZXA 2OPUA 2JEBI 3V69A 1DT4A 1DTJA 4QMFB 4AIMA 4WALA 2HH3A 2CPQA 2P2RA 1VIGA 1ZTGA 2ANRA 4OO1G 1J4WA 2PQUA 2CTFA 2CTEA 5C0XG 1X4NA 1ZZIA 2AXYA 2CTKA 4NBQA 1K1GA 2CTMA 4JVHA 5K36G 2JVZA 2YQRA 2FMRA 1ZZJA 1EC6A 1X4MA 2BL5A 2HH2A 2DGRA 1VIHA 3VKEA 5JEAG 2ANNA 1WE8A 1J5KA 3AEVB 1KHMA 4WANA 3L7ZC 1WVNA 2BA0A 2OPVA 4BA1I 2PY9A 2CTLA 2JEAI 3U1KA 4BA2I 4IFDG 4JVYA 2MJHA 2CTJA 2E3UA 2NN6G 4LIJA 1TUAA 4B8TA 2Z0SA 2JE6I
chains in the Genus database with same CATH superfamily

4DR1H 3T1HH 1FKAH 5IWAH 2JA9A 4DR6H 4JI4H 2K1HA 3QD7X 2P2RA 3I0PA 4LF5H 4DR4H 4DV1H 4OCHA 2PQUA 2M8WA 1N32H 2CTEA 3J80W 4DV7H 1I6UA 2AXYA 4JI1H 4DV6H 2UXDH 2JVZA 4PDBA 4B8TA 1V8CA 2ZQEA 3GKUA 2BL5A 1HNZH 2VQFH 2FPHX 4JV5H 5JEAG 2O4CA 4LF6H 4DV2H 2UU9H 4GKJH 4YHHH 2Y3MA 4H8AA 3OTOH 1WVNA 4B3MH 2OPVA 3FAUA 2CTLA 4E9JA 3U1KA 4JI7H 4NXMH 1XNQH 2JEAI 2CWFA 1XMQH 2CTJA 2NN6G 5IT9W 2LTLA 2LRRA 1S03G 2QNDA 4AM3A 2VQEH 2JZXA 3V69A 4JI5H 1DTJA 4WALA 4OX9H 3J81W 4EC5A 1N34H 5LMUH 3JAMW 2ZM6H 2CTFA 1X0AA 5C0XG 4DV0H 1ZZIA 4LF7H 1SEIA 1XNRH 4JI6H 4JVHA 2PT7G 1EC6A 1XRHA 3KDKA 2HH2A 2DGRA 5BR8H 1XMOH 2D9IA 2M6QA 4X62H 1KHMA 4DUZH 2UUAH 3J7AK 3OSSD 5A2QW 4B3RH 2VKCA 4LFAH 1HR0H 1N36H 3EZJA 1HNWH 4DV3H 5LL6b 1F0XA 1X9ZA 2FFMA 3T1YH 4DR7H 4IFDG 1IBKH 1I94H 4LF9H 2ANRA 1J4WA 3AEVB 4AIMA 2JE6I 1ZZKA 1WTJA 2LF0A 1J5EH 2OPUA 3VKEA 2JEBI 1DT4A 2X06A 2E5LH 4FJSA 4DR2H 4OO1G 4X66H 2CWHA 1UG8A 2CTKA 4NBQA 4JI0H 2LTMA 5DT9A 2A1SA 4YY3H 3GR5A 4LFCH 4G08A 1N33H 4LFBH 4JI2H 2ANNA 2F4VH 1WE8A 1J5KA 4DR5H 1HNXH 1PQXA 4WANA 4B3SH 2BA0A 4DV5H 4NZRM 4BA1I 1WHRA 1ODHA 4JVYA 1AN7A 3OETA 2MJHA 2E3UA 4DUYH 4B3TH 1TUAA 1V9NA 4DR3H 4NXNH 4JI8H 2UUCH 1IBLH 4QMFB 2CPMA 2CPQA 2HH3A 2UXBH 1MSZA 1VIGA 1ZTGA 2UXCH 4JYAH 4FJUA 4LF8H 4OD6A 1K1GA 1X4NA 4B8CD 2CTMA 4DV4H 1Z2IA 3KDGA 2YQRA 2FMRA 4X64H 1ZZJA 5K36G 1VBIA 1X4MA 1VIHA 4KHPH 4NZTM 2UUBH 4AQYH 1IBMH 1S20A 2HHHH 5LMNH 3L7ZC 4GKKH 4X65H 4JI3H 2G8YA 3GABA 1NXUA 2PY9A 4K0KH 4BA2I 4LF4H 3SB1A 3UOEA 1FJGH 4LIJA 5FLXW 3RF2A 2Z0SA 3NCVA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1ZZK A;  2QND A;  4AM3 A;  2JA9 A;  2JZX A;  2OPU A;  2JEB I;  3V69 A;  1DT4 A;  1DTJ A;  4QMF B;  4AIM A;  4WAL A;  2HH3 A;  2CPQ A;  2P2R A;  1VIG A;  1ZTG A;  2ANR A;  4OO1 G;  1J4W A;  2PQU A;  2CTF A;  2CTE A;  5C0X G;  1X4N A;  1ZZI A;  2AXY A;  2CTK A;  4NBQ A;  1K1G A;  2CTM A;  4JVH A;  5K36 G;  2JVZ A;  2YQR A;  2FMR A;  1ZZJ A;  1EC6 A;  1X4M A;  2BL5 A;  2HH2 A;  2DGR A;  1VIH A;  3VKE A;  5JEA G;  2ANN A;  1WE8 A;  1J5K A;  3AEV B;  1KHM A;  4WAN A;  3L7Z C;  1WVN A;  2BA0 A;  2OPV A;  4BA1 I;  2PY9 A;  2CTL A;  2JEA I;  3U1K A;  4BA2 I;  4IFD G;  4JVY A;  2MJH A;  2CTJ A;  2E3U A;  2NN6 G;  4LIJ A;  1TUA A;  4B8T A;  2Z0S A;  2JE6 I; 
#chains in the Genus database with same CATH topology
 4DR1 H;  3T1H H;  1FKA H;  5IWA H;  2JA9 A;  4DR6 H;  4JI4 H;  2K1H A;  3QD7 X;  2P2R A;  3I0P A;  4LF5 H;  4DR4 H;  4DV1 H;  4OCH A;  2PQU A;  2M8W A;  1N32 H;  2CTE A;  3J80 W;  4DV7 H;  1I6U A;  2AXY A;  4JI1 H;  4DV6 H;  2UXD H;  2JVZ A;  4PDB A;  4B8T A;  1V8C A;  2ZQE A;  3GKU A;  2BL5 A;  1HNZ H;  2VQF H;  2FPH X;  4JV5 H;  5JEA G;  2O4C A;  4LF6 H;  4DV2 H;  2UU9 H;  4GKJ H;  4YHH H;  2Y3M A;  4H8A A;  3OTO H;  1WVN A;  4B3M H;  2OPV A;  3FAU A;  2CTL A;  4E9J A;  3U1K A;  4JI7 H;  4NXM H;  1XNQ H;  2JEA I;  2CWF A;  1XMQ H;  2CTJ A;  2NN6 G;  5IT9 W;  2LTL A;  2LRR A;  1S03 G;  2QND A;  4AM3 A;  2VQE H;  2JZX A;  3V69 A;  4JI5 H;  1DTJ A;  4WAL A;  4OX9 H;  3J81 W;  4EC5 A;  1N34 H;  5LMU H;  3JAM W;  2ZM6 H;  2CTF A;  1X0A A;  5C0X G;  4DV0 H;  1ZZI A;  4LF7 H;  1SEI A;  1XNR H;  4JI6 H;  4JVH A;  2PT7 G;  1EC6 A;  1XRH A;  3KDK A;  2HH2 A;  2DGR A;  5BR8 H;  1XMO H;  2D9I A;  2M6Q A;  4X62 H;  1KHM A;  4DUZ H;  2UUA H;  3J7A K;  3OSS D;  5A2Q W;  4B3R H;  2VKC A;  4LFA H;  1HR0 H;  1N36 H;  3EZJ A;  1HNW H;  4DV3 H;  5LL6 b;  1F0X A;  1X9Z A;  2FFM A;  3T1Y H;  4DR7 H;  4IFD G;  1IBK H;  1I94 H;  4LF9 H;  2ANR A;  1J4W A;  3AEV B;  4AIM A;  2JE6 I;  1ZZK A;  1WTJ A;  2LF0 A;  1J5E H;  2OPU A;  3VKE A;  2JEB I;  1DT4 A;  2X06 A;  2E5L H;  4FJS A;  4DR2 H;  4OO1 G;  4X66 H;  2CWH A;  1UG8 A;  2CTK A;  4NBQ A;  4JI0 H;  2LTM A;  5DT9 A;  2A1S A;  4YY3 H;  3GR5 A;  4LFC H;  4G08 A;  1N33 H;  4LFB H;  4JI2 H;  2ANN A;  2F4V H;  1WE8 A;  1J5K A;  4DR5 H;  1HNX H;  1PQX A;  4WAN A;  4B3S H;  2BA0 A;  4DV5 H;  4NZR M;  4BA1 I;  1WHR A;  1ODH A;  4JVY A;  1AN7 A;  3OET A;  2MJH A;  2E3U A;  4DUY H;  4B3T H;  1TUA A;  1V9N A;  4DR3 H;  4NXN H;  4JI8 H;  2UUC H;  1IBL H;  4QMF B;  2CPM A;  2CPQ A;  2HH3 A;  2UXB H;  1MSZ A;  1VIG A;  1ZTG A;  2UXC H;  4JYA H;  4FJU A;  4LF8 H;  4OD6 A;  1K1G A;  1X4N A;  4B8C D;  2CTM A;  4DV4 H;  1Z2I A;  3KDG A;  2YQR A;  2FMR A;  4X64 H;  1ZZJ A;  5K36 G;  1VBI A;  1X4M A;  1VIH A;  4KHP H;  4NZT M;  2UUB H;  4AQY H;  1IBM H;  1S20 A;  2HHH H;  5LMN H;  3L7Z C;  4GKK H;  4X65 H;  4JI3 H;  2G8Y A;  3GAB A;  1NXU A;  2PY9 A;  4K0K H;  4BA2 I;  4LF4 H;  3SB1 A;  3UOE A;  1FJG H;  4LIJ A;  5FLX W;  3RF2 A;  2Z0S A;  3NCV A; 
#chains in the Genus database with same CATH homology
 1ZZK A;  2QND A;  4AM3 A;  2JA9 A;  2JZX A;  2OPU A;  2JEB I;  3V69 A;  1DT4 A;  1DTJ A;  4QMF B;  4AIM A;  4WAL A;  2HH3 A;  2CPQ A;  2P2R A;  1VIG A;  1ZTG A;  2ANR A;  4OO1 G;  1J4W A;  2PQU A;  2CTF A;  2CTE A;  5C0X G;  1X4N A;  1ZZI A;  2AXY A;  2CTK A;  4NBQ A;  1K1G A;  2CTM A;  4JVH A;  5K36 G;  2JVZ A;  2YQR A;  2FMR A;  1ZZJ A;  1EC6 A;  1X4M A;  2BL5 A;  2HH2 A;  2DGR A;  1VIH A;  3VKE A;  5JEA G;  2ANN A;  1WE8 A;  1J5K A;  3AEV B;  1KHM A;  4WAN A;  3L7Z C;  1WVN A;  2BA0 A;  2OPV A;  4BA1 I;  2PY9 A;  2CTL A;  2JEA I;  3U1K A;  4BA2 I;  4IFD G;  4JVY A;  2MJH A;  2CTJ A;  2E3U A;  2NN6 G;  4LIJ A;  1TUA A;  4B8T A;  2Z0S A;  2JE6 I;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2JZXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations