2K1HA

Solution nmr structure of ser13 from staphylococcus epidermidis. northeast structural genomics consortium target ser13
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
86
structure length
86
Chain Sequence
MEIIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIENTFAKSN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution Structure of SeR13.
rcsb
molecule tags Structural genomics, unknown function
source organism Staphylococcus epidermidis
molecule keywords Uncharacterized protein SeR13
total genus 12
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2008-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08712 Nfu_N Scaffold protein Nfu/NifU N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Scaffold protein Nfu/NifU, N-terminal domain 2k1hA00
2LTLA 2FFMA 2LTMA 2M8WA 1PQXA 2K1HA 2M6QA
chains in the Genus database with same CATH superfamily
5JEAG 4B3TH 2CTLA 1F0XA 2QNDA 5C0XG 2UUCH 4OX9H 1AN7A 3KDGA 4AIMA 5LMUH 1PQXA 1N36H 3T1HH 1V9NA 4OD6A 4JV5H 1VBIA 1V8CA 2G8YA 4DV3H 3T1YH 4JYAH 2CTMA 4LF7H 2Y3MA 5A2QW 1HR0H 1XRHA 1SEIA 4B3SH 4B8CD 2OPVA 3JAMW 4JI5H 4NXMH 2E3UA 1FKAH 1UG8A 1VIHA 4NZRM 1XMOH 2FFMA 4DR5H 1VIGA 1ZZKA 2CWHA 4QMFB 4IFDG 2YQRA 4JI7H 4DUYH 4H8AA 4JI4H 3GR5A 1ZZIA 1S20A 4AM3A 4DV2H 4K0KH 4JI0H 2CTJA 3OETA 2VQEH 2M6QA 4LIJA 4NXNH 3J7AK 4DR2H 4DV5H 1N34H 2JEBI 4JI2H 3V69A 2VKCA 4WALA 4PDBA 1IBLH 2UU9H 4BA2I 1XNRH 5FLXW 3SB1A 2JEAI 1K1GA 4LF6H 4OO1G 2M8WA 1KHMA 2HHHH 3OSSD 4YHHH 5K36G 2JA9A 3QD7X 2ANRA 4B3RH 4GKJH 1N32H 4LFAH 2MJHA 1NXUA 5LL6b 2UUBH 2LRRA 4DV4H 4LF9H 2JZXA 1WHRA 4BA1I 2LF0A 2JVZA 4LF5H 3KDKA 1ZZJA 4B3MH 1X4NA 4G08A 4JI8H 2Z0SA 1I94H 2PT7G 4GKKH 3GKUA 1HNZH 1I6UA 4X62H 3FAUA 1S03G 2UXDH 5LMNH 2D9IA 2BA0A 2ZQEA 2AXYA 1TUAA 2LTLA 3L7ZC 3GABA 3J81W 1J5KA 1ZTGA 2UXCH 4DV6H 4OCHA 4DV0H 4EC5A 1HNXH 1WVNA 4X64H 4X66H 2PY9A 4LF4H 2BL5A 4DUZH 4JI3H 1WE8A 2NN6G 2E5LH 4FJSA 4DR7H 1WTJA 5DT9A 1X9ZA 1N33H 2HH2A 3I0PA 2PQUA 4DR3H 1IBMH 2FMRA 2CTKA 2JE6I 4B8TA 3AEVB 2CPQA 1IBKH 2A1SA 4LFCH 4DV7H 3J80W 2ANNA 1DT4A 2CTEA 4E9JA 4DR4H 4JVYA 5IT9W 1MSZA 2P2RA 1HNWH 4FJUA 2CWFA 2F4VH 3NCVA 4JVHA 4JI1H 1Z2IA 4NZTM 2FPHX 2K1HA 3U1KA 2UXBH 4DV1H 4NBQA 3OTOH 2VQFH 1X0AA 1XNQH 2X06A 4DR6H 4DR1H 1FJGH 3EZJA 1X4MA 1DTJA 3RF2A 2ZM6H 1J5EH 2UUAH 3UOEA 4KHPH 1J4WA 2CTFA 4X65H 3VKEA 2O4CA 4LF8H 2OPUA 2LTMA 1ODHA 1EC6A 4WANA 2CPMA 5BR8H 2HH3A 1XMQH 4LFBH 4AQYH 5IWAH 4JI6H 2DGRA 4YY3H
chains in the Genus database with same CATH topology
2LTLA 2FFMA 2LTMA 2M8WA 1PQXA 2K1HA 2M6QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LTL A;  2FFM A;  2LTM A;  2M8W A;  1PQX A;  2K1H A;  2M6Q A; 
#chains in the Genus database with same CATH topology
 5JEA G;  4B3T H;  2CTL A;  1F0X A;  2QND A;  5C0X G;  2UUC H;  4OX9 H;  1AN7 A;  3KDG A;  4AIM A;  5LMU H;  1PQX A;  1N36 H;  3T1H H;  1V9N A;  4OD6 A;  4JV5 H;  1VBI A;  1V8C A;  2G8Y A;  4DV3 H;  3T1Y H;  4JYA H;  2CTM A;  4LF7 H;  2Y3M A;  5A2Q W;  1HR0 H;  1XRH A;  1SEI A;  4B3S H;  4B8C D;  2OPV A;  3JAM W;  4JI5 H;  4NXM H;  2E3U A;  1FKA H;  1UG8 A;  1VIH A;  4NZR M;  1XMO H;  2FFM A;  4DR5 H;  1VIG A;  1ZZK A;  2CWH A;  4QMF B;  4IFD G;  2YQR A;  4JI7 H;  4DUY H;  4H8A A;  4JI4 H;  3GR5 A;  1ZZI A;  1S20 A;  4AM3 A;  4DV2 H;  4K0K H;  4JI0 H;  2CTJ A;  3OET A;  2VQE H;  2M6Q A;  4LIJ A;  4NXN H;  3J7A K;  4DR2 H;  4DV5 H;  1N34 H;  2JEB I;  4JI2 H;  3V69 A;  2VKC A;  4WAL A;  4PDB A;  1IBL H;  2UU9 H;  4BA2 I;  1XNR H;  5FLX W;  3SB1 A;  2JEA I;  1K1G A;  4LF6 H;  4OO1 G;  2M8W A;  1KHM A;  2HHH H;  3OSS D;  4YHH H;  5K36 G;  2JA9 A;  3QD7 X;  2ANR A;  4B3R H;  4GKJ H;  1N32 H;  4LFA H;  2MJH A;  1NXU A;  5LL6 b;  2UUB H;  2LRR A;  4DV4 H;  4LF9 H;  2JZX A;  1WHR A;  4BA1 I;  2LF0 A;  2JVZ A;  4LF5 H;  3KDK A;  1ZZJ A;  4B3M H;  1X4N A;  4G08 A;  4JI8 H;  2Z0S A;  1I94 H;  2PT7 G;  4GKK H;  3GKU A;  1HNZ H;  1I6U A;  4X62 H;  3FAU A;  1S03 G;  2UXD H;  5LMN H;  2D9I A;  2BA0 A;  2ZQE A;  2AXY A;  1TUA A;  2LTL A;  3L7Z C;  3GAB A;  3J81 W;  1J5K A;  1ZTG A;  2UXC H;  4DV6 H;  4OCH A;  4DV0 H;  4EC5 A;  1HNX H;  1WVN A;  4X64 H;  4X66 H;  2PY9 A;  4LF4 H;  2BL5 A;  4DUZ H;  4JI3 H;  1WE8 A;  2NN6 G;  2E5L H;  4FJS A;  4DR7 H;  1WTJ A;  5DT9 A;  1X9Z A;  1N33 H;  2HH2 A;  3I0P A;  2PQU A;  4DR3 H;  1IBM H;  2FMR A;  2CTK A;  2JE6 I;  4B8T A;  3AEV B;  2CPQ A;  1IBK H;  2A1S A;  4LFC H;  4DV7 H;  3J80 W;  2ANN A;  1DT4 A;  2CTE A;  4E9J A;  4DR4 H;  4JVY A;  5IT9 W;  1MSZ A;  2P2R A;  1HNW H;  4FJU A;  2CWF A;  2F4V H;  3NCV A;  4JVH A;  4JI1 H;  1Z2I A;  4NZT M;  2FPH X;  2K1H A;  3U1K A;  2UXB H;  4DV1 H;  4NBQ A;  3OTO H;  2VQF H;  1X0A A;  1XNQ H;  2X06 A;  4DR6 H;  4DR1 H;  1FJG H;  3EZJ A;  1X4M A;  1DTJ A;  3RF2 A;  2ZM6 H;  1J5E H;  2UUA H;  3UOE A;  4KHP H;  1J4W A;  2CTF A;  4X65 H;  3VKE A;  2O4C A;  4LF8 H;  2OPU A;  2LTM A;  1ODH A;  1EC6 A;  4WAN A;  2CPM A;  5BR8 H;  2HH3 A;  1XMQ H;  4LFB H;  4AQY H;  5IWA H;  4JI6 H;  2DGR A;  4YY3 H; 
#chains in the Genus database with same CATH homology
 2LTL A;  2FFM A;  2LTM A;  2M8W A;  1PQX A;  2K1H A;  2M6Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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