The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
31
|
sequence length |
120
|
structure length |
120
|
Chain Sequence |
MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLEEMTGFSKTTF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution structure of sf3636, a two-domain unknown function protein from Shigella flexneri 2a, determined by joint refinement of NMR, residual dipolar couplings and small-angle X-ray scattering
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Shigella flexneri
|
| molecule keywords |
Uncharacterized protein yibL
|
| total genus |
31
|
| structure length |
120
|
| sequence length |
120
|
| ec nomenclature | |
| pdb deposition date | 2011-06-27 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | Ribosomal Protein S8; Chain: A, domain 1 | ||
| Few Secondary Structures | Irregular | DNA Excision Repair, Uvrb; Chain A | UVR domain |
#chains in the Genus database with same CATH superfamily 4U1C A; 1QOJ A; 1E52 A; 2A26 A; 3PXG A; 1YSM A; 2LF0 A; #chains in the Genus database with same CATH topology 4DV3 H; 2MJH A; 2CPM A; 4B3S H; 1TUA A; 2E3U A; 4DR1 H; 4DV1 H; 1Z0K B; 5LL6 b; 2QND A; 3VKE A; 1XRH A; 4FJU A; 2P2R A; 3NCV A; 1AN7 A; 5DT9 A; 4X64 H; 4X65 H; 2VQF H; 4U1C A; 2PY9 A; 3V1F A; 1HNW H; 1XMO H; 3V1E A; 1DT4 A; 1V8C A; 3OET A; 1ZZI A; 2M8W A; 4JI3 H; 3EZJ A; 1VBI A; 4EC5 A; 1XNQ H; 1MSZ A; 4GKK H; 2LTM A; 4YY3 H; 1UG8 A; 1E52 A; 2BL5 A; 4DV6 H; 2ZQE A; 4B3M H; 5IT9 W; 2CWH A; 2M6Q A; 1NXU A; 1X0A A; 1FKA H; 2UUB H; 3V1B A; 1V9N A; 2BA0 A; 1HNZ H; 4NXM H; 3L7Z C; 3U1K A; 3AEV B; 2NN6 G; 4BA1 I; 4B3R H; 1YSM A; 5K36 G; 2Y3M A; 2HHH H; 1FJG H; 4DUZ H; 4AIM A; 4B3T H; 4JI7 H; 4FJS A; 2ANN A; 2FMR A; 4AQY H; 4NZR M; 4LFB H; 4PDB A; 1WVN A; 2CTF A; 3JAM W; 4NXN H; 1KHM A; 1SEI A; 3GAB A; 4JI2 H; 1ZTG A; 2VQE H; 2JVZ A; 2UUC H; 2DGR A; 1WTJ A; 2CTK A; 2FPH X; 4DR6 H; 4DR4 H; 3V1D A; 1N36 H; 1PQX A; 5A2Q W; 1S20 A; 4B8T A; 2JZX A; 4DR3 H; 2ZM6 H; 1DTJ A; 4LF5 H; 4LF7 H; 4DV4 H; 2HH2 A; 3UOE A; 2F4V H; 4WAN A; 1HR0 H; 2UXC H; 4OD6 A; 1VIG A; 4NBQ A; 5BR8 H; 3GKU A; 4OX9 H; 4DV5 H; 1XNR H; 1WE8 A; 4JVH A; 3J80 W; 1QOJ A; 2FFM A; 2CTJ A; 2A1S A; 2CPQ A; 2G8Y A; 1IBM H; 3FAU A; 2JE6 I; 4LIJ A; 1S03 G; 1N34 H; 2JEB I; 3J81 W; 1J5E H; 2CTL A; 4JI6 H; 3J7A K; 4KHP H; 1K1G A; 2A26 A; 3PXG A; 2X06 A; 4K0K H; 1ZZJ A; 5LMU H; 2UU9 H; 2PQU A; 4DUY H; 2JEA I; 4DV7 H; 4X62 H; 3SB1 A; 1IBL H; 4B8C D; 1I6U A; 4JI5 H; 4QMF B; 4E9J A; 3DKQ A; 2PT7 G; 5JEA G; 2JA9 A; 4DV0 H; 4OO1 G; 2CTM A; 2AXY A; 4JV5 H; 3QD7 X; 4OCH A; 4IFD G; 1VIH A; 5LMN H; 2D9I A; 3I0P A; 4LFA H; 1I94 H; 4JYA H; 4GKJ H; 2UXD H; 4G08 A; 2LTL A; 3KDK A; 2VKC A; 1ODH A; 2OPV A; 4X66 H; 4NZT M; 2UXB H; 4LF4 H; 4LFC H; 4JI0 H; 4JI4 H; 2LRR A; 3T1Y H; 2CWF A; 1IBK H; 5IWA H; 1Z2I A; 2OPU A; 5C0X G; 4WAL A; 1N32 H; 4DR2 H; 4JVY A; 2YQR A; 4LF6 H; 4H8A A; 4AM3 A; 1J4W A; 2UUA H; 3T1H H; 3V1A A; 4JI1 H; 1EC6 A; 3OSS D; 3OTO H; 2Z0S A; 3V69 A; 4DR5 H; 4YHH H; 4BA2 I; 4DR7 H; 1N33 H; 1YZM A; 1F0X A; 4DV2 H; 1XMQ H; 1Z0J B; 2CTE A; 2HH3 A; 4LF9 H; 2ANR A; 2E5L H; 4LF8 H; 1HNX H; 3RF2 A; 1X4N A; 2K1H A; 3KDG A; 1ZZK A; 1WHR A; 4JI8 H; 1X9Z A; 5FLX W; 2O4C A; 3V1C A; 1X4M A; 1J5K A; 2LF0 A; 3GR5 A; #chains in the Genus database with same CATH homology 4DV3 H; 4B3S H; 4DR1 H; 4DV1 H; 5LL6 b; 3NCV A; 1AN7 A; 5DT9 A; 4X64 H; 4X65 H; 2VQF H; 4U1C A; 1HNW H; 1XMO H; 3OET A; 4JI3 H; 3EZJ A; 4EC5 A; 1XNQ H; 4GKK H; 4YY3 H; 1E52 A; 4DV6 H; 2ZQE A; 4B3M H; 5IT9 W; 1FKA H; 2UUB H; 1HNZ H; 4NXM H; 4B3R H; 1YSM A; 2Y3M A; 2HHH H; 1FJG H; 4DUZ H; 4B3T H; 4JI7 H; 4LFB H; 4AQY H; 4NZR M; 4PDB A; 3JAM W; 4NXN H; 3GAB A; 1SEI A; 4JI2 H; 2VQE H; 2UUC H; 2FPH X; 4DR6 H; 4DR4 H; 1N36 H; 5A2Q W; 4DR3 H; 2ZM6 H; 4LF5 H; 4LF7 H; 4DV4 H; 2F4V H; 1HR0 H; 2UXC H; 4OD6 A; 5BR8 H; 4OX9 H; 4DV5 H; 1XNR H; 1QOJ A; 3J80 W; 1IBM H; 3FAU A; 1S03 G; 1N34 H; 3J81 W; 1J5E H; 3J7A K; 4KHP H; 2A26 A; 3PXG A; 4K0K H; 5LMU H; 2UU9 H; 4DUY H; 4DV7 H; 4X62 H; 3SB1 A; 1IBL H; 4B8C D; 1I6U A; 4JI5 H; 4E9J A; 2PT7 G; 4DV0 H; 4JV5 H; 3QD7 X; 4OCH A; 5LMN H; 2D9I A; 4LFA H; 1I94 H; 4JYA H; 4GKJ H; 2UXD H; 4G08 A; 3KDK A; 2VKC A; 1ODH A; 4X66 H; 4NZT M; 2UXB H; 4LF4 H; 4LFC H; 4JI0 H; 4JI4 H; 3T1Y H; 1IBK H; 5IWA H; 1N32 H; 4DR2 H; 4LF6 H; 2UUA H; 3T1H H; 4JI1 H; 3OSS D; 3OTO H; 4DR5 H; 4YHH H; 4DR7 H; 1N33 H; 1F0X A; 4DV2 H; 1XMQ H; 4LF9 H; 2E5L H; 4LF8 H; 1HNX H; 3RF2 A; 3KDG A; 4JI8 H; 1X9Z A; 5FLX W; 2O4C A; 4JI6 H; 2LF0 A; 3GR5 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
