2M8W | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	91
structure length	91
Chain Sequence	MKIISISETPNHNTMKITLSESREGMTSDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAVFELEHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 91 atoms

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91 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Staphylococcus aureus subsp. aureus
publication title	PDBStat: a universal restraint converter and restraint analysis software package for protein NMR. pubmed doi rcsb
molecule keywords	Uncharacterized protein
total genus	18
structure length	91
sequence length	91
ec nomenclature
pdb deposition date	2013-05-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08712	Nfu_N	Scaffold protein Nfu/NifU N terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.70	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Scaffold protein Nfu/NifU, N-terminal domain	2m8wA00

2LTMA 2M8WA 2M6QA 2K1HA 2LTLA 2FFMA 1PQXA
chains in the Genus database with same CATH superfamily

4JI0H 4DV0H 3OTOH 2CTJA 4DV7H 5DT9A 4LF4H 2ANRA 1XNRH 1J5EH 1X9ZA 2UXDH 2YQRA 4NZRM 3RF2A 1I94H 4LF8H 4OCHA 4KHPH 1ZZKA 4JV5H 1SEIA 1V9NA 2CPMA 4JYAH 3OETA 2PQUA 1KHMA 1NXUA 4AQYH 3JAMW 4DV1H 4LFBH 2JEBI 2AXYA 4B8TA 2UUCH 2MJHA 3GKUA 2UXCH 4B3RH 2A1SA 2G8YA 3I0PA 4BA1I 4DR6H 5BR8H 4WANA 2CWHA 4X62H 1N36H 1S20A 5JEAG 1ZTGA 4B3MH 1WVNA 3UOEA 2LRRA 3GABA 4NXMH 2M6QA 4G08A 5LMNH 1WE8A 1J4WA 2ZM6H 4DR4H 4GKJH 2JEAI 2ZQEA 2JZXA 2E3UA 1ZZJA 1FKAH 1VBIA 1TUAA 1Z2IA 4IFDG 2HH2A 1ODHA 4JI4H 2CTEA 2LTMA 1K1GA 1HR0H 4LFAH 1HNWH 4K0KH 1XMQH 1EC6A 4LFCH 2E5LH 2QNDA 1XMOH 1AN7A 4OO1G 1DT4A 4YY3H 2CWFA 4OX9H 4JI6H 5LL6b 2F4VH 4DR7H 2UU9H 4FJSA 1VIGA 2BA0A 3QD7X 4YHHH 4JVYA 2M8WA 4DV3H 1XNQH 3J7AK 1N33H 1X0AA 3FAUA 3EZJA 3VKEA 1S03G 1WTJA 2FFMA 2JE6I 4GKKH 4LF9H 1XRHA 4JI8H 4DV2H 3J80W 2Y3MA 4LF7H 4AIMA 4DV4H 2DGRA 2HH3A 2LF0A 4FJUA 2VQFH 2LTLA 2OPVA 2UXBH 4NXNH 1X4NA 1IBMH 4JI3H 4BA2I 2PY9A 1VIHA 1HNZH 3KDGA 2FMRA 4DV6H 2K1HA 4LF6H 4DV5H 4B3TH 2JA9A 3OSSD 4DR1H 5IT9W 2JVZA 2FPHX 4AM3A 4DR2H 2X06A 1MSZA 2UUBH 4JI2H 2O4CA 4QMFB 3T1HH 1N32H 3SB1A 2UUAH 2BL5A 4X65H 2OPUA 3AEVB 4X66H 4DR3H 2VKCA 2VQEH 2CPQA 4LIJA 4DUYH 2D9IA 1X4MA 4B8CD 4E9JA 1WHRA 3J81W 1IBLH 2CTMA 4WALA 4B3SH 3U1KA 1UG8A 4X64H 4NZTM 4NBQA 5LMUH 1V8CA 1HNXH 4H8AA 4JI7H 5IWAH 1F0XA 3T1YH 2Z0SA 4JVHA 1DTJA 1PQXA 2CTLA 5FLXW 1FJGH 3L7ZC 1I6UA 5K36G 3V69A 2HHHH 5C0XG 4JI5H 3NCVA 4LF5H 4DUZH 3GR5A 2ANNA 4PDBA 4OD6A 3KDKA 2PT7G 2CTKA 4EC5A 4DR5H 1N34H 2P2RA 1ZZIA 2CTFA 5A2QW 1J5KA 4JI1H 1IBKH 2NN6G
chains in the Genus database with same CATH topology

2LTMA 2M8WA 2M6QA 2K1HA 2LTLA 2FFMA 1PQXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2LTM A;  2M8W A;  2M6Q A;  2K1H A;  2LTL A;  2FFM A;  1PQX A; 
#chains in the Genus database with same CATH topology
 4JI0 H;  4DV0 H;  3OTO H;  2CTJ A;  4DV7 H;  5DT9 A;  4LF4 H;  2ANR A;  1XNR H;  1J5E H;  1X9Z A;  2UXD H;  2YQR A;  4NZR M;  3RF2 A;  1I94 H;  4LF8 H;  4OCH A;  4KHP H;  1ZZK A;  4JV5 H;  1SEI A;  1V9N A;  2CPM A;  4JYA H;  3OET A;  2PQU A;  1KHM A;  1NXU A;  4AQY H;  3JAM W;  4DV1 H;  4LFB H;  2JEB I;  2AXY A;  4B8T A;  2UUC H;  2MJH A;  3GKU A;  2UXC H;  4B3R H;  2A1S A;  2G8Y A;  3I0P A;  4BA1 I;  4DR6 H;  5BR8 H;  4WAN A;  2CWH A;  4X62 H;  1N36 H;  1S20 A;  5JEA G;  1ZTG A;  4B3M H;  1WVN A;  3UOE A;  2LRR A;  3GAB A;  4NXM H;  2M6Q A;  4G08 A;  5LMN H;  1WE8 A;  1J4W A;  2ZM6 H;  4DR4 H;  4GKJ H;  2JEA I;  2ZQE A;  2JZX A;  2E3U A;  1ZZJ A;  1FKA H;  1VBI A;  1TUA A;  1Z2I A;  4IFD G;  2HH2 A;  1ODH A;  4JI4 H;  2CTE A;  2LTM A;  1K1G A;  1HR0 H;  4LFA H;  1HNW H;  4K0K H;  1XMQ H;  1EC6 A;  4LFC H;  2E5L H;  2QND A;  1XMO H;  1AN7 A;  4OO1 G;  1DT4 A;  4YY3 H;  2CWF A;  4OX9 H;  4JI6 H;  5LL6 b;  2F4V H;  4DR7 H;  2UU9 H;  4FJS A;  1VIG A;  2BA0 A;  3QD7 X;  4YHH H;  4JVY A;  2M8W A;  4DV3 H;  1XNQ H;  3J7A K;  1N33 H;  1X0A A;  3FAU A;  3EZJ A;  3VKE A;  1S03 G;  1WTJ A;  2FFM A;  2JE6 I;  4GKK H;  4LF9 H;  1XRH A;  4JI8 H;  4DV2 H;  3J80 W;  2Y3M A;  4LF7 H;  4AIM A;  4DV4 H;  2DGR A;  2HH3 A;  2LF0 A;  4FJU A;  2VQF H;  2LTL A;  2OPV A;  2UXB H;  4NXN H;  1X4N A;  1IBM H;  4JI3 H;  4BA2 I;  2PY9 A;  1VIH A;  1HNZ H;  3KDG A;  2FMR A;  4DV6 H;  2K1H A;  4LF6 H;  4DV5 H;  4B3T H;  2JA9 A;  3OSS D;  4DR1 H;  5IT9 W;  2JVZ A;  2FPH X;  4AM3 A;  4DR2 H;  2X06 A;  1MSZ A;  2UUB H;  4JI2 H;  2O4C A;  4QMF B;  3T1H H;  1N32 H;  3SB1 A;  2UUA H;  2BL5 A;  4X65 H;  2OPU A;  3AEV B;  4X66 H;  4DR3 H;  2VKC A;  2VQE H;  2CPQ A;  4LIJ A;  4DUY H;  2D9I A;  1X4M A;  4B8C D;  4E9J A;  1WHR A;  3J81 W;  1IBL H;  2CTM A;  4WAL A;  4B3S H;  3U1K A;  1UG8 A;  4X64 H;  4NZT M;  4NBQ A;  5LMU H;  1V8C A;  1HNX H;  4H8A A;  4JI7 H;  5IWA H;  1F0X A;  3T1Y H;  2Z0S A;  4JVH A;  1DTJ A;  1PQX A;  2CTL A;  5FLX W;  1FJG H;  3L7Z C;  1I6U A;  5K36 G;  3V69 A;  2HHH H;  5C0X G;  4JI5 H;  3NCV A;  4LF5 H;  4DUZ H;  3GR5 A;  2ANN A;  4PDB A;  4OD6 A;  3KDK A;  2PT7 G;  2CTK A;  4EC5 A;  4DR5 H;  1N34 H;  2P2R A;  1ZZI A;  2CTF A;  5A2Q W;  1J5K A;  4JI1 H;  1IBK H;  2NN6 G; 
#chains in the Genus database with same CATH homology
 2LTM A;  2M8W A;  2M6Q A;  2K1H A;  2LTL A;  2FFM A;  1PQX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2M8WA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations