2MJH | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	142
structure length	142
Chain Sequence	LPEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSPNPA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Rna binding protein
source organism	Caenorhabditis elegans
publication title	Structural and functional implications of the QUA2 domain on RNA recognition by GLD-1. pubmed doi rcsb
molecule keywords	Female germline-specific tumor suppressor gld-1
total genus	27
structure length	142
sequence length	142
ec nomenclature
pdb deposition date	2014-01-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	2mjhA00

5JEAG 2JE6I 2OPVA 1X4NA 2CPQA 2CTLA 1WE8A 5C0XG 4LIJA 2CTFA 5K36G 2CTKA 3VKEA 4BA1I 2HH2A 4NBQA 4IFDG 3AEVB 2BA0A 1EC6A 4JVHA 2CTMA 3L7ZC 2JVZA 2QNDA 2AXYA 2MJHA 2PY9A 2DGRA 1KHMA 2JZXA 1ZTGA 1DTJA 2JEAI 1J5KA 3V69A 3U1KA 1ZZIA 1VIGA 2P2RA 4WALA 2NN6G 2OPUA 4OO1G 2JEBI 4QMFB 2FMRA 2CTJA 1ZZJA 4B8TA 2ANNA 2BL5A 2PQUA 2ANRA 1ZZKA 4JVYA 4WANA 2YQRA 1J4WA 2HH3A 1TUAA 1VIHA 2E3UA 1WVNA 2Z0SA 1X4MA 4BA2I 1K1GA 4AIMA 4AM3A 1DT4A 2CTEA 2JA9A
chains in the Genus database with same CATH superfamily

5LMNH 5DT9A 5LMUH 4JI6H 4B3TH 5FLXW 2UUCH 3FAUA 2HH2A 2LTLA 1FJGH 4DUZH 3AEVB 3GABA 2VQEH 1N34H 1XMQH 2UUAH 2JVZA 2AXYA 4G08A 4NZTM 2UXCH 1S20A 2DGRA 4DR5H 1ZTGA 2LF0A 3U1KA 3QD7X 4JYAH 1S03G 4B8CD 4OO1G 4OX9H 1Z2IA 2CTJA 4DR2H 4E9JA 2ANNA 2A1SA 2M8WA 3T1YH 1IBMH 1ZZKA 2ANRA 4X62H 4LF8H 2LTMA 1XNRH 1N33H 4WANA 2Z0SA 3OETA 4NXMH 1IBLH 4JI0H 1N36H 2CTEA 5JEAG 2JE6I 2OPVA 4NXNH 2CPQA 4NZRM 5C0XG 1WE8A 1VBIA 5LL6b 1SEIA 2FPHX 1V9NA 2ZM6H 4PDBA 1HNZH 4BA1I 4LF5H 1UG8A 4YHHH 2BA0A 1EC6A 2CTMA 4X65H 1WTJA 2QNDA 4X66H 4GKJH 4LFAH 2VKCA 4DV5H 4JI4H 4X64H 2F4VH 1WHRA 3NCVA 5IWAH 2G8YA 4KHPH 2K1HA 1ZZIA 1VIGA 3JAMW 4JI8H 4LF7H 1XNQH 4OCHA 4YY3H 4DV6H 1X0AA 2NN6G 2OPUA 4AQYH 4QMFB 1X9ZA 2FMRA 4JV5H 2D9IA 2UUBH 2PQUA 4FJUA 2CWHA 2YQRA 2UXDH 1TUAA 1VIHA 1WVNA 4BA2I 1K1GA 4AM3A 3RF2A 4OD6A 4DR1H 1ODHA 3KDKA 5A2QW 1X4NA 2CTLA 3T1HH 3GKUA 4LF6H 3J81W 4LIJA 2CTFA 1HR0H 1PQXA 2CTKA 4DR3H 4DV3H 3I0PA 4B3MH 4JI7H 1HNWH 4DR6H 4IFDG 4DR7H 4EC5A 2E5LH 2PT7G 3EZJA 3L7ZC 2X06A 3GR5A 4DUYH 4LFCH 3OSSD 3UOEA 1XMOH 2JZXA 1F0XA 1DTJA 2HHHH 3J7AK 1AN7A 4JI5H 2P2RA 2CWFA 1IBKH 4LFBH 4H8AA 2JEBI 4K0KH 1ZZJA 4B8TA 4JI1H 2FFMA 3KDGA 2O4CA 2Y3MA 4DV1H 4B3RH 4JVYA 4DV7H 2E3UA 1FKAH 4JI3H 1I6UA 3OTOH 1V8CA 4LF4H 2PY9A 4DV0H 3J80W 5K36G 3VKEA 1J5EH 4FJSA 4NBQA 4JI2H 4JVHA 1NXUA 5IT9W 2MJHA 1MSZA 4GKKH 2CPMA 5BR8H 1KHMA 2JEAI 1J5KA 1I94H 3V69A 4DV4H 4B3SH 4WALA 2M6QA 4DV2H 2BL5A 2UXBH 1HNXH 2ZQEA 4DR4H 1XRHA 1J4WA 2HH3A 2LRRA 3SB1A 1X4MA 4AIMA 2VQFH 1DT4A 1N32H 2UU9H 2JA9A 4LF9H
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5JEA G;  2JE6 I;  2OPV A;  1X4N A;  2CPQ A;  2CTL A;  1WE8 A;  5C0X G;  4LIJ A;  2CTF A;  5K36 G;  2CTK A;  3VKE A;  4BA1 I;  2HH2 A;  4NBQ A;  4IFD G;  3AEV B;  2BA0 A;  1EC6 A;  4JVH A;  2CTM A;  3L7Z C;  2JVZ A;  2QND A;  2AXY A;  2MJH A;  2PY9 A;  2DGR A;  1KHM A;  2JZX A;  1ZTG A;  1DTJ A;  2JEA I;  1J5K A;  3V69 A;  3U1K A;  1ZZI A;  1VIG A;  2P2R A;  4WAL A;  2NN6 G;  2OPU A;  4OO1 G;  2JEB I;  4QMF B;  2FMR A;  2CTJ A;  1ZZJ A;  4B8T A;  2ANN A;  2BL5 A;  2PQU A;  2ANR A;  1ZZK A;  4JVY A;  4WAN A;  2YQR A;  1J4W A;  2HH3 A;  1TUA A;  1VIH A;  2E3U A;  1WVN A;  2Z0S A;  1X4M A;  4BA2 I;  1K1G A;  4AIM A;  4AM3 A;  1DT4 A;  2CTE A;  2JA9 A; 
#chains in the Genus database with same CATH topology
 5LMN H;  5DT9 A;  5LMU H;  4JI6 H;  4B3T H;  5FLX W;  2UUC H;  3FAU A;  2HH2 A;  2LTL A;  1FJG H;  4DUZ H;  3AEV B;  3GAB A;  2VQE H;  1N34 H;  1XMQ H;  2UUA H;  2JVZ A;  2AXY A;  4G08 A;  4NZT M;  2UXC H;  1S20 A;  2DGR A;  4DR5 H;  1ZTG A;  2LF0 A;  3U1K A;  3QD7 X;  4JYA H;  1S03 G;  4B8C D;  4OO1 G;  4OX9 H;  1Z2I A;  2CTJ A;  4DR2 H;  4E9J A;  2ANN A;  2A1S A;  2M8W A;  3T1Y H;  1IBM H;  1ZZK A;  2ANR A;  4X62 H;  4LF8 H;  2LTM A;  1XNR H;  1N33 H;  4WAN A;  2Z0S A;  3OET A;  4NXM H;  1IBL H;  4JI0 H;  1N36 H;  2CTE A;  5JEA G;  2JE6 I;  2OPV A;  4NXN H;  2CPQ A;  4NZR M;  5C0X G;  1WE8 A;  1VBI A;  5LL6 b;  1SEI A;  2FPH X;  1V9N A;  2ZM6 H;  4PDB A;  1HNZ H;  4BA1 I;  4LF5 H;  1UG8 A;  4YHH H;  2BA0 A;  1EC6 A;  2CTM A;  4X65 H;  1WTJ A;  2QND A;  4X66 H;  4GKJ H;  4LFA H;  2VKC A;  4DV5 H;  4JI4 H;  4X64 H;  2F4V H;  1WHR A;  3NCV A;  5IWA H;  2G8Y A;  4KHP H;  2K1H A;  1ZZI A;  1VIG A;  3JAM W;  4JI8 H;  4LF7 H;  1XNQ H;  4OCH A;  4YY3 H;  4DV6 H;  1X0A A;  2NN6 G;  2OPU A;  4AQY H;  4QMF B;  1X9Z A;  2FMR A;  4JV5 H;  2D9I A;  2UUB H;  2PQU A;  4FJU A;  2CWH A;  2YQR A;  2UXD H;  1TUA A;  1VIH A;  1WVN A;  4BA2 I;  1K1G A;  4AM3 A;  3RF2 A;  4OD6 A;  4DR1 H;  1ODH A;  3KDK A;  5A2Q W;  1X4N A;  2CTL A;  3T1H H;  3GKU A;  4LF6 H;  3J81 W;  4LIJ A;  2CTF A;  1HR0 H;  1PQX A;  2CTK A;  4DR3 H;  4DV3 H;  3I0P A;  4B3M H;  4JI7 H;  1HNW H;  4DR6 H;  4IFD G;  4DR7 H;  4EC5 A;  2E5L H;  2PT7 G;  3EZJ A;  3L7Z C;  2X06 A;  3GR5 A;  4DUY H;  4LFC H;  3OSS D;  3UOE A;  1XMO H;  2JZX A;  1F0X A;  1DTJ A;  2HHH H;  3J7A K;  1AN7 A;  4JI5 H;  2P2R A;  2CWF A;  1IBK H;  4LFB H;  4H8A A;  2JEB I;  4K0K H;  1ZZJ A;  4B8T A;  4JI1 H;  2FFM A;  3KDG A;  2O4C A;  2Y3M A;  4DV1 H;  4B3R H;  4JVY A;  4DV7 H;  2E3U A;  1FKA H;  4JI3 H;  1I6U A;  3OTO H;  1V8C A;  4LF4 H;  2PY9 A;  4DV0 H;  3J80 W;  5K36 G;  3VKE A;  1J5E H;  4FJS A;  4NBQ A;  4JI2 H;  4JVH A;  1NXU A;  5IT9 W;  2MJH A;  1MSZ A;  4GKK H;  2CPM A;  5BR8 H;  1KHM A;  2JEA I;  1J5K A;  1I94 H;  3V69 A;  4DV4 H;  4B3S H;  4WAL A;  2M6Q A;  4DV2 H;  2BL5 A;  2UXB H;  1HNX H;  2ZQE A;  4DR4 H;  1XRH A;  1J4W A;  2HH3 A;  2LRR A;  3SB1 A;  1X4M A;  4AIM A;  2VQF H;  1DT4 A;  1N32 H;  2UU9 H;  2JA9 A;  4LF9 H; 
#chains in the Genus database with same CATH homology
 5JEA G;  2JE6 I;  2OPV A;  1X4N A;  2CPQ A;  2CTL A;  1WE8 A;  5C0X G;  4LIJ A;  2CTF A;  5K36 G;  2CTK A;  3VKE A;  4BA1 I;  2HH2 A;  4NBQ A;  4IFD G;  3AEV B;  2BA0 A;  1EC6 A;  4JVH A;  2CTM A;  3L7Z C;  2JVZ A;  2QND A;  2AXY A;  2MJH A;  2PY9 A;  2DGR A;  1KHM A;  2JZX A;  1ZTG A;  1DTJ A;  2JEA I;  1J5K A;  3V69 A;  3U1K A;  1ZZI A;  1VIG A;  2P2R A;  4WAL A;  2NN6 G;  2OPU A;  4OO1 G;  2JEB I;  4QMF B;  2FMR A;  2CTJ A;  1ZZJ A;  4B8T A;  2ANN A;  2BL5 A;  2PQU A;  2ANR A;  1ZZK A;  4JVY A;  4WAN A;  2YQR A;  1J4W A;  2HH3 A;  1TUA A;  1VIH A;  2E3U A;  1WVN A;  2Z0S A;  1X4M A;  4BA2 I;  1K1G A;  4AIM A;  4AM3 A;  1DT4 A;  2CTE A;  2JA9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2MJHA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations