2PY9 | Genus

Total Genus 15

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	72
structure length	72
Chain Sequence	KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rna and dna binding protein/rna
source organism	Homo sapiens
publication title	X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2. pubmed doi rcsb
molecule keywords	12-mer C-rich strand of human telomeric RNA
total genus	15
structure length	72
sequence length	72
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2007-05-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00013	KH_1	KH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	K Homology domain, type 1	2py9A00

1VIHA 4OO1G 4LIJA 2JEBI 1DTJA 2MJHA 2FMRA 2Z0SA 3L7ZC 1J4WA 4AM3A 1KHMA 2OPUA 2NN6G 2PQUA 4QMFB 4BA1I 2CTJA 2YQRA 2JVZA 2AXYA 2DGRA 2CTEA 2QNDA 1ZTGA 1X4MA 1ZZKA 2PY9A 4B8TA 2ANNA 2JA9A 2JE6I 1J5KA 2CTMA 5K36G 2JEAI 2ANRA 4IFDG 2HH3A 4WALA 2BL5A 3VKEA 2BA0A 3V69A 1ZZIA 1K1GA 2OPVA 3U1KA 1WE8A 5JEAG 4JVHA 2JZXA 3AEVB 1DT4A 4BA2I 4JVYA 2CPQA 4WANA 2CTKA 4NBQA 1ZZJA 1TUAA 2HH2A 2E3UA 2P2RA 1X4NA 2CTFA 4AIMA 5C0XG 1VIGA 1WVNA 1EC6A 2CTLA
chains in the Genus database with same CATH superfamily

4LF9H 2LRRA 4DR1H 1HNZH 2JEBI 1WTJA 3OTOH 2Z0SA 2MJHA 1KHMA 3GR5A 2NN6G 1N32H 3OSSD 4DV1H 2YQRA 1ZTGA 2AXYA 2ZQEA 2PY9A 1HR0H 1XNRH 4B8TA 2ANNA 2JEAI 4IFDG 4LFAH 2D9IA 3VKEA 3V69A 3UOEA 4DUZH 3FAUA 3U1KA 4FJUA 4DV2H 4JI5H 4LFCH 4AQYH 4NXNH 1XNQH 2LTLA 3AEVB 3T1YH 2HHHH 2CPQA 4DV5H 4BA2I 4B3RH 4WANA 4X65H 1X4NA 4DUYH 4LF8H 4LF6H 2CTFA 5C0XG 1IBLH 4LF7H 4JI1H 4EC5A 4JI8H 1HNXH 1VIHA 1UG8A 1J4WA 1F0XA 2LF0A 4LF5H 4GKKH 4GKJH 2LTMA 1N34H 2PQUA 4BA1I 4B3MH 2UXBH 2JVZA 4NZTM 4FJSA 2UXDH 3J81W 4H8AA 1X4MA 5IT9W 1ZZKA 2FFMA 2CWHA 4LFBH 4PDBA 1NXUA 3RF2A 1IBKH 4KHPH 5K36G 3GKUA 1ZZIA 2M8WA 1XRHA 1WE8A 5JEAG 4DV0H 4DR6H 3NCVA 1DT4A 4JI7H 4DR4H 1SEIA 2ZM6H 1Z2IA 1IBMH 4JI2H 4DR5H 4JYAH 1XMOH 1PQXA 2CWFA 4LIJA 4B3SH 1DTJA 2E5LH 2FMRA 3I0PA 3L7ZC 4AM3A 1X0AA 3SB1A 5LL6b 4B3TH 2CTJA 3J80W 2UU9H 2O4CA 2DGRA 2CTEA 1AN7A 4OD6A 2VKCA 2UUAH 4YHHH 5FLXW 5IWAH 5LMNH 3KDGA 1J5KA 2UUBH 5DT9A 4K0KH 4NXMH 2HH3A 4WALA 4B8CD 4JI4H 2BA0A 4DV6H 4NZRM 4E9JA 1ODHA 4YY3H 4X66H 4JVHA 2JZXA 3EZJA 2VQEH 4DV3H 4NBQA 1WHRA 5BR8H 2P2RA 2HH2A 2E3UA 3J7AK 1XMQH 4DR2H 2FPHX 1S20A 4DR3H 1V9NA 4QMFB 2Y3MA 4DV7H 2X06A 2UUCH 4OO1G 1N33H 4X62H 1MSZA 2K1HA 2OPUA 2CPMA 2G8YA 4DV4H 2QNDA 2A1SA 5LMUH 1VBIA 4JI0H 2JA9A 1FKAH 2JE6I 2CTMA 3OETA 4G08A 4X64H 1S03G 3KDKA 2ANRA 1I94H 2BL5A 2VQFH 2F4VH 4JV5H 1K1GA 4OCHA 2OPVA 3QD7X 4JVYA 2M6QA 1J5EH 4JI6H 4LF4H 1V8CA 1HNWH 2CTKA 1X9ZA 5A2QW 1TUAA 3T1HH 1ZZJA 4JI3H 3JAMW 4OX9H 2UXCH 1I6UA 4AIMA 1FJGH 1VIGA 1WVNA 2PT7G 1N36H 4DR7H 1EC6A 2CTLA 3GABA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1VIH A;  4OO1 G;  4LIJ A;  2JEB I;  1DTJ A;  2MJH A;  2FMR A;  2Z0S A;  3L7Z C;  1J4W A;  4AM3 A;  1KHM A;  2OPU A;  2NN6 G;  2PQU A;  4QMF B;  4BA1 I;  2CTJ A;  2YQR A;  2JVZ A;  2AXY A;  2DGR A;  2CTE A;  2QND A;  1ZTG A;  1X4M A;  1ZZK A;  2PY9 A;  4B8T A;  2ANN A;  2JA9 A;  2JE6 I;  1J5K A;  2CTM A;  5K36 G;  2JEA I;  2ANR A;  4IFD G;  2HH3 A;  4WAL A;  2BL5 A;  3VKE A;  2BA0 A;  3V69 A;  1ZZI A;  1K1G A;  2OPV A;  3U1K A;  1WE8 A;  5JEA G;  4JVH A;  2JZX A;  3AEV B;  1DT4 A;  4BA2 I;  4JVY A;  2CPQ A;  4WAN A;  2CTK A;  4NBQ A;  1ZZJ A;  1TUA A;  2HH2 A;  2E3U A;  2P2R A;  1X4N A;  2CTF A;  4AIM A;  5C0X G;  1VIG A;  1WVN A;  1EC6 A;  2CTL A; 
#chains in the Genus database with same CATH topology
 4LF9 H;  2LRR A;  4DR1 H;  1HNZ H;  2JEB I;  1WTJ A;  3OTO H;  2Z0S A;  2MJH A;  1KHM A;  3GR5 A;  2NN6 G;  1N32 H;  3OSS D;  4DV1 H;  2YQR A;  1ZTG A;  2AXY A;  2ZQE A;  2PY9 A;  1HR0 H;  1XNR H;  4B8T A;  2ANN A;  2JEA I;  4IFD G;  4LFA H;  2D9I A;  3VKE A;  3V69 A;  3UOE A;  4DUZ H;  3FAU A;  3U1K A;  4FJU A;  4DV2 H;  4JI5 H;  4LFC H;  4AQY H;  4NXN H;  1XNQ H;  2LTL A;  3AEV B;  3T1Y H;  2HHH H;  2CPQ A;  4DV5 H;  4BA2 I;  4B3R H;  4WAN A;  4X65 H;  1X4N A;  4DUY H;  4LF8 H;  4LF6 H;  2CTF A;  5C0X G;  1IBL H;  4LF7 H;  4JI1 H;  4EC5 A;  4JI8 H;  1HNX H;  1VIH A;  1UG8 A;  1J4W A;  1F0X A;  2LF0 A;  4LF5 H;  4GKK H;  4GKJ H;  2LTM A;  1N34 H;  2PQU A;  4BA1 I;  4B3M H;  2UXB H;  2JVZ A;  4NZT M;  4FJS A;  2UXD H;  3J81 W;  4H8A A;  1X4M A;  5IT9 W;  1ZZK A;  2FFM A;  2CWH A;  4LFB H;  4PDB A;  1NXU A;  3RF2 A;  1IBK H;  4KHP H;  5K36 G;  3GKU A;  1ZZI A;  2M8W A;  1XRH A;  1WE8 A;  5JEA G;  4DV0 H;  4DR6 H;  3NCV A;  1DT4 A;  4JI7 H;  4DR4 H;  1SEI A;  2ZM6 H;  1Z2I A;  1IBM H;  4JI2 H;  4DR5 H;  4JYA H;  1XMO H;  1PQX A;  2CWF A;  4LIJ A;  4B3S H;  1DTJ A;  2E5L H;  2FMR A;  3I0P A;  3L7Z C;  4AM3 A;  1X0A A;  3SB1 A;  5LL6 b;  4B3T H;  2CTJ A;  3J80 W;  2UU9 H;  2O4C A;  2DGR A;  2CTE A;  1AN7 A;  4OD6 A;  2VKC A;  2UUA H;  4YHH H;  5FLX W;  5IWA H;  5LMN H;  3KDG A;  1J5K A;  2UUB H;  5DT9 A;  4K0K H;  4NXM H;  2HH3 A;  4WAL A;  4B8C D;  4JI4 H;  2BA0 A;  4DV6 H;  4NZR M;  4E9J A;  1ODH A;  4YY3 H;  4X66 H;  4JVH A;  2JZX A;  3EZJ A;  2VQE H;  4DV3 H;  4NBQ A;  1WHR A;  5BR8 H;  2P2R A;  2HH2 A;  2E3U A;  3J7A K;  1XMQ H;  4DR2 H;  2FPH X;  1S20 A;  4DR3 H;  1V9N A;  4QMF B;  2Y3M A;  4DV7 H;  2X06 A;  2UUC H;  4OO1 G;  1N33 H;  4X62 H;  1MSZ A;  2K1H A;  2OPU A;  2CPM A;  2G8Y A;  4DV4 H;  2QND A;  2A1S A;  5LMU H;  1VBI A;  4JI0 H;  2JA9 A;  1FKA H;  2JE6 I;  2CTM A;  3OET A;  4G08 A;  4X64 H;  1S03 G;  3KDK A;  2ANR A;  1I94 H;  2BL5 A;  2VQF H;  2F4V H;  4JV5 H;  1K1G A;  4OCH A;  2OPV A;  3QD7 X;  4JVY A;  2M6Q A;  1J5E H;  4JI6 H;  4LF4 H;  1V8C A;  1HNW H;  2CTK A;  1X9Z A;  5A2Q W;  1TUA A;  3T1H H;  1ZZJ A;  4JI3 H;  3JAM W;  4OX9 H;  2UXC H;  1I6U A;  4AIM A;  1FJG H;  1VIG A;  1WVN A;  2PT7 G;  1N36 H;  4DR7 H;  1EC6 A;  2CTL A;  3GAB A; 
#chains in the Genus database with same CATH homology
 1VIH A;  4OO1 G;  4LIJ A;  2JEB I;  1DTJ A;  2MJH A;  2FMR A;  2Z0S A;  3L7Z C;  1J4W A;  4AM3 A;  1KHM A;  2OPU A;  2NN6 G;  2PQU A;  4QMF B;  4BA1 I;  2CTJ A;  2YQR A;  2JVZ A;  2AXY A;  2DGR A;  2CTE A;  2QND A;  1ZTG A;  1X4M A;  1ZZK A;  2PY9 A;  4B8T A;  2ANN A;  2JA9 A;  2JE6 I;  1J5K A;  2CTM A;  5K36 G;  2JEA I;  2ANR A;  4IFD G;  2HH3 A;  4WAL A;  2BL5 A;  3VKE A;  2BA0 A;  3V69 A;  1ZZI A;  1K1G A;  2OPV A;  3U1K A;  1WE8 A;  5JEA G;  4JVH A;  2JZX A;  3AEV B;  1DT4 A;  4BA2 I;  4JVY A;  2CPQ A;  4WAN A;  2CTK A;  4NBQ A;  1ZZJ A;  1TUA A;  2HH2 A;  2E3U A;  2P2R A;  1X4N A;  2CTF A;  4AIM A;  5C0X G;  1VIG A;  1WVN A;  1EC6 A;  2CTL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2PY9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations