2PY9A

Protein-rna interaction involving kh1 domain from human poly(c)-binding protein-2
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
72
structure length
72
Chain Sequence
KNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2.
pubmed doi rcsb
molecule tags Rna and dna binding protein/rna
source organism Homo sapiens
molecule keywords 12-mer C-rich strand of human telomeric RNA
total genus 15
structure length 72
sequence length 72
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2py9A00
1X4NA 2HH3A 2E3UA 1DT4A 2JVZA 1WE8A 2JE6I 2OPUA 1TUAA 1VIHA 4AM3A 2AXYA 2P2RA 2JEAI 1KHMA 2CTMA 4JVYA 5K36G 2CTLA 4WANA 1VIGA 5C0XG 2CTKA 2BA0A 2QNDA 2PY9A 2PQUA 4OO1G 2NN6G 1ZZKA 2YQRA 2HH2A 4BA1I 2MJHA 2CTJA 1DTJA 4JVHA 2JA9A 4QMFB 2ANRA 3U1KA 1J5KA 3V69A 5JEAG 2JZXA 1X4MA 2CPQA 4BA2I 1ZZIA 1ZZJA 2CTEA 2FMRA 4IFDG 2OPVA 4WALA 2BL5A 4NBQA 1J4WA 2ANNA 3L7ZC 4AIMA 1WVNA 3VKEA 1K1GA 2Z0SA 4LIJA 4B8TA 2JEBI 1ZTGA 2CTFA 3AEVB 1EC6A 2DGRA
chains in the Genus database with same CATH superfamily
2X06A 3KDKA 4DUZH 2JE6I 1V9NA 2LRRA 1VIHA 2K1HA 3GKUA 4AM3A 2VQFH 5IT9W 1KHMA 4NZTM 2CTMA 2Y3MA 2BA0A 3JAMW 2QNDA 2NN6G 3OTOH 1I6UA 3GR5A 4H8AA 2YQRA 2HH2A 4BA1I 5A2QW 4LFAH 4K0KH 2PT7G 3I0PA 4JVHA 4QMFB 3U1KA 2O4CA 3V69A 4B3SH 4BA2I 2CPQA 4G08A 4KHPH 1IBKH 5LMUH 1N32H 3UOEA 5BR8H 4NBQA 4NXMH 4JI0H 1XMOH 3L7ZC 1V8CA 1HNXH 3J7AK 3J81W 2JEBI 4DR3H 1FKAH 4NXNH 4DR4H 4NZRM 1NXUA 4FJSA 2E3UA 1WE8A 3GABA 5IWAH 4DV5H 3T1YH 2VKCA 1HR0H 4JVYA 1WHRA 1XRHA 2G8YA 2CTKA 5C0XG 1ODHA 2UUBH 4OX9H 2UXCH 2CWHA 1J5EH 2CTJA 2A1SA 4X62H 1WTJA 2UUCH 1J5KA 4JI7H 1S20A 4E9JA 2ZM6H 2JZXA 1X4MA 3T1HH 2CPMA 1ZZIA 2CTEA 2FMRA 4IFDG 4DUYH 2UXBH 2OPVA 2BL5A 4GKJH 1J4WA 2ANNA 4AIMA 2VQEH 2ZQEA 4JV5H 4B3MH 1HNWH 3OSSD 1ZTGA 4LFBH 4X66H 3FAUA 1EC6A 4B3RH 2CWFA 5DT9A 1X4NA 2HH3A 2HHHH 4X65H 1Z2IA 2OPUA 1I94H 1VBIA 2P2RA 4JI1H 1UG8A 4YHHH 4DR5H 4JI5H 2CTLA 5K36G 1VIGA 2PY9A 4OO1G 2PQUA 2LTLA 2FFMA 3EZJA 4X64H 3J80W 4FJUA 4LF5H 4LF9H 1SEIA 1XMQH 1N33H 4DV0H 2JA9A 2M8WA 5LL6b 4JI8H 1PQXA 1AN7A 2LF0A 2LTMA 5JEAG 4DV1H 4DV3H 2UXDH 4DV4H 2D9IA 4DR6H 1ZZJA 4PDBA 1IBMH 1S03G 3VKEA 4LF8H 4LF4H 2Z0SA 4B8TA 4AQYH 3AEVB 2F4VH 2M6QA 4EC5A 1XNRH 5FLXW 2UUAH 1DT4A 2JVZA 4YY3H 1N36H 4DV7H 1TUAA 3QD7X 4OCHA 3RF2A 5LMNH 2AXYA 4JI4H 2JEAI 4JYAH 1F0XA 3NCVA 4WANA 1HNZH 4DV2H 1XNQH 1MSZA 3KDGA 4B3TH 4LF7H 1ZZKA 4B8CD 2MJHA 4JI3H 4DV6H 1DTJA 3SB1A 2ANRA 2UU9H 4GKKH 3OETA 2FPHX 1FJGH 4LFCH 1X9ZA 4DR1H 4WALA 4OD6A 4JI6H 1WVNA 1K1GA 4DR7H 1IBLH 4LIJA 4DR2H 4LF6H 2CTFA 4JI2H 1X0AA 2E5LH 2DGRA 1N34H
chains in the Genus database with same CATH topology
1X4NA 2HH3A 2E3UA 1DT4A 2JVZA 1WE8A 2JE6I 2OPUA 1TUAA 1VIHA 4AM3A 2AXYA 2P2RA 2JEAI 1KHMA 2CTMA 4JVYA 5K36G 2CTLA 4WANA 1VIGA 5C0XG 2CTKA 2BA0A 2QNDA 2PY9A 2PQUA 4OO1G 2NN6G 1ZZKA 2YQRA 2HH2A 4BA1I 2MJHA 2CTJA 1DTJA 4JVHA 2JA9A 4QMFB 2ANRA 3U1KA 1J5KA 3V69A 5JEAG 2JZXA 1X4MA 2CPQA 4BA2I 1ZZIA 1ZZJA 2CTEA 2FMRA 4IFDG 2OPVA 4WALA 2BL5A 4NBQA 1J4WA 2ANNA 3L7ZC 4AIMA 1WVNA 3VKEA 1K1GA 2Z0SA 4LIJA 4B8TA 2JEBI 1ZTGA 2CTFA 3AEVB 1EC6A 2DGRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X4N A;  2HH3 A;  2E3U A;  1DT4 A;  2JVZ A;  1WE8 A;  2JE6 I;  2OPU A;  1TUA A;  1VIH A;  4AM3 A;  2AXY A;  2P2R A;  2JEA I;  1KHM A;  2CTM A;  4JVY A;  5K36 G;  2CTL A;  4WAN A;  1VIG A;  5C0X G;  2CTK A;  2BA0 A;  2QND A;  2PY9 A;  2PQU A;  4OO1 G;  2NN6 G;  1ZZK A;  2YQR A;  2HH2 A;  4BA1 I;  2MJH A;  2CTJ A;  1DTJ A;  4JVH A;  2JA9 A;  4QMF B;  2ANR A;  3U1K A;  1J5K A;  3V69 A;  5JEA G;  2JZX A;  1X4M A;  2CPQ A;  4BA2 I;  1ZZI A;  1ZZJ A;  2CTE A;  2FMR A;  4IFD G;  2OPV A;  4WAL A;  2BL5 A;  4NBQ A;  1J4W A;  2ANN A;  3L7Z C;  4AIM A;  1WVN A;  3VKE A;  1K1G A;  2Z0S A;  4LIJ A;  4B8T A;  2JEB I;  1ZTG A;  2CTF A;  3AEV B;  1EC6 A;  2DGR A; 
#chains in the Genus database with same CATH topology
 2X06 A;  3KDK A;  4DUZ H;  2JE6 I;  1V9N A;  2LRR A;  1VIH A;  2K1H A;  3GKU A;  4AM3 A;  2VQF H;  5IT9 W;  1KHM A;  4NZT M;  2CTM A;  2Y3M A;  2BA0 A;  3JAM W;  2QND A;  2NN6 G;  3OTO H;  1I6U A;  3GR5 A;  4H8A A;  2YQR A;  2HH2 A;  4BA1 I;  5A2Q W;  4LFA H;  4K0K H;  2PT7 G;  3I0P A;  4JVH A;  4QMF B;  3U1K A;  2O4C A;  3V69 A;  4B3S H;  4BA2 I;  2CPQ A;  4G08 A;  4KHP H;  1IBK H;  5LMU H;  1N32 H;  3UOE A;  5BR8 H;  4NBQ A;  4NXM H;  4JI0 H;  1XMO H;  3L7Z C;  1V8C A;  1HNX H;  3J7A K;  3J81 W;  2JEB I;  4DR3 H;  1FKA H;  4NXN H;  4DR4 H;  4NZR M;  1NXU A;  4FJS A;  2E3U A;  1WE8 A;  3GAB A;  5IWA H;  4DV5 H;  3T1Y H;  2VKC A;  1HR0 H;  4JVY A;  1WHR A;  1XRH A;  2G8Y A;  2CTK A;  5C0X G;  1ODH A;  2UUB H;  4OX9 H;  2UXC H;  2CWH A;  1J5E H;  2CTJ A;  2A1S A;  4X62 H;  1WTJ A;  2UUC H;  1J5K A;  4JI7 H;  1S20 A;  4E9J A;  2ZM6 H;  2JZX A;  1X4M A;  3T1H H;  2CPM A;  1ZZI A;  2CTE A;  2FMR A;  4IFD G;  4DUY H;  2UXB H;  2OPV A;  2BL5 A;  4GKJ H;  1J4W A;  2ANN A;  4AIM A;  2VQE H;  2ZQE A;  4JV5 H;  4B3M H;  1HNW H;  3OSS D;  1ZTG A;  4LFB H;  4X66 H;  3FAU A;  1EC6 A;  4B3R H;  2CWF A;  5DT9 A;  1X4N A;  2HH3 A;  2HHH H;  4X65 H;  1Z2I A;  2OPU A;  1I94 H;  1VBI A;  2P2R A;  4JI1 H;  1UG8 A;  4YHH H;  4DR5 H;  4JI5 H;  2CTL A;  5K36 G;  1VIG A;  2PY9 A;  4OO1 G;  2PQU A;  2LTL A;  2FFM A;  3EZJ A;  4X64 H;  3J80 W;  4FJU A;  4LF5 H;  4LF9 H;  1SEI A;  1XMQ H;  1N33 H;  4DV0 H;  2JA9 A;  2M8W A;  5LL6 b;  4JI8 H;  1PQX A;  1AN7 A;  2LF0 A;  2LTM A;  5JEA G;  4DV1 H;  4DV3 H;  2UXD H;  4DV4 H;  2D9I A;  4DR6 H;  1ZZJ A;  4PDB A;  1IBM H;  1S03 G;  3VKE A;  4LF8 H;  4LF4 H;  2Z0S A;  4B8T A;  4AQY H;  3AEV B;  2F4V H;  2M6Q A;  4EC5 A;  1XNR H;  5FLX W;  2UUA H;  1DT4 A;  2JVZ A;  4YY3 H;  1N36 H;  4DV7 H;  1TUA A;  3QD7 X;  4OCH A;  3RF2 A;  5LMN H;  2AXY A;  4JI4 H;  2JEA I;  4JYA H;  1F0X A;  3NCV A;  4WAN A;  1HNZ H;  4DV2 H;  1XNQ H;  1MSZ A;  3KDG A;  4B3T H;  4LF7 H;  1ZZK A;  4B8C D;  2MJH A;  4JI3 H;  4DV6 H;  1DTJ A;  3SB1 A;  2ANR A;  2UU9 H;  4GKK H;  3OET A;  2FPH X;  1FJG H;  4LFC H;  1X9Z A;  4DR1 H;  4WAL A;  4OD6 A;  4JI6 H;  1WVN A;  1K1G A;  4DR7 H;  1IBL H;  4LIJ A;  4DR2 H;  4LF6 H;  2CTF A;  4JI2 H;  1X0A A;  2E5L H;  2DGR A;  1N34 H; 
#chains in the Genus database with same CATH homology
 1X4N A;  2HH3 A;  2E3U A;  1DT4 A;  2JVZ A;  1WE8 A;  2JE6 I;  2OPU A;  1TUA A;  1VIH A;  4AM3 A;  2AXY A;  2P2R A;  2JEA I;  1KHM A;  2CTM A;  4JVY A;  5K36 G;  2CTL A;  4WAN A;  1VIG A;  5C0X G;  2CTK A;  2BA0 A;  2QND A;  2PY9 A;  2PQU A;  4OO1 G;  2NN6 G;  1ZZK A;  2YQR A;  2HH2 A;  4BA1 I;  2MJH A;  2CTJ A;  1DTJ A;  4JVH A;  2JA9 A;  4QMF B;  2ANR A;  3U1K A;  1J5K A;  3V69 A;  5JEA G;  2JZX A;  1X4M A;  2CPQ A;  4BA2 I;  1ZZI A;  1ZZJ A;  2CTE A;  2FMR A;  4IFD G;  2OPV A;  4WAL A;  2BL5 A;  4NBQ A;  1J4W A;  2ANN A;  3L7Z C;  4AIM A;  1WVN A;  3VKE A;  1K1G A;  2Z0S A;  4LIJ A;  4B8T A;  2JEB I;  1ZTG A;  2CTF A;  3AEV B;  1EC6 A;  2DGR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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