The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
20
|
sequence length |
70
|
structure length |
70
|
Chain Sequence |
PEGVESQDGVDHFRAMIVEFMASKKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Basis for 5'-End-Specific Recognition of Single-Stranded DNA by the R3H Domain from Human Smubp-2
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Homo sapiens
|
| molecule keywords |
DNA-binding protein SMUBP-2
|
| total genus |
20
|
| structure length |
70
|
| sequence length |
70
|
| ec nomenclature |
ec
3.6.4.12: DNA helicase. |
| pdb deposition date | 2012-04-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01424 | R3H | R3H domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8; Chain: A, domain 1 | R3H-like domain |
#chains in the Genus database with same CATH superfamily 2CPM A; 2LRR A; 1MSZ A; 1WHR A; 3GKU A; 1UG8 A; 2A1S A; #chains in the Genus database with same CATH topology 4PDB A; 4LFA H; 3U1K A; 5LL6 b; 1MSZ A; 2HH3 A; 4NZT M; 2CWH A; 2JVZ A; 2UUA H; 2UXD H; 4X66 H; 1NXU A; 2LF0 A; 1HNW H; 1PQX A; 2BA0 A; 3OTO H; 4DV7 H; 4NXN H; 2M8W A; 1I94 H; 4OCH A; 4QMF B; 2HH2 A; 2ANR A; 4EC5 A; 4B8T A; 4B3R H; 5BR8 H; 4DV4 H; 2OPV A; 3V69 A; 5FLX W; 2PQU A; 2UUB H; 4JI5 H; 1K1G A; 1X9Z A; 1DTJ A; 4BA1 I; 2F4V H; 2ZM6 H; 1UG8 A; 2HHH H; 1SEI A; 3EZJ A; 4H8A A; 4AIM A; 1HNZ H; 4LF4 H; 2LTL A; 2CTK A; 1ZTG A; 2ANN A; 2E5L H; 4IFD G; 4LF8 H; 4AM3 A; 2O4C A; 4LFB H; 1WHR A; 1X4M A; 4DR3 H; 4JI1 H; 2CTJ A; 3L7Z C; 4B3M H; 1DT4 A; 2VQF H; 4LF5 H; 5LMU H; 1J5E H; 4YY3 H; 1J5K A; 2JEA I; 1I6U A; 2FPH X; 2X06 A; 4JVH A; 1XRH A; 4JI4 H; 1IBL H; 4K0K H; 2Z0S A; 2P2R A; 3NCV A; 2UXB H; 4NZR M; 4LF7 H; 1N33 H; 2JEB I; 2G8Y A; 2JE6 I; 3GR5 A; 2CPQ A; 4DV0 H; 2UUC H; 4LFC H; 2LTM A; 5C0X G; 4G08 A; 4X64 H; 2AXY A; 1S03 G; 4NBQ A; 4YHH H; 1F0X A; 2CWF A; 3T1Y H; 1N32 H; 1S20 A; 2A1S A; 4DR7 H; 4DV3 H; 2UU9 H; 2M6Q A; 4JI0 H; 2JZX A; 4DV1 H; 4KHP H; 4DR1 H; 1XNR H; 2PY9 A; 4FJS A; 1X0A A; 5A2Q W; 4BA2 I; 3KDK A; 1HR0 H; 4AQY H; 1HNX H; 3J81 W; 2NN6 G; 4DR2 H; 3UOE A; 1XNQ H; 2ZQE A; 2CTF A; 2Y3M A; 1Z2I A; 4JI8 H; 3OET A; 1EC6 A; 4E9J A; 2LRR A; 4LIJ A; 3RF2 A; 2YQR A; 3T1H H; 4DV6 H; 1ZZJ A; 1IBK H; 1WE8 A; 4DV2 H; 4JYA H; 4B8C D; 3AEV B; 1N36 H; 1V9N A; 4OX9 H; 4GKJ H; 1FKA H; 3VKE A; 4LF9 H; 4DR4 H; 2BL5 A; 2CPM A; 2D9I A; 2PT7 G; 3JAM W; 4B3T H; 1WTJ A; 4WAN A; 4DUZ H; 3J80 W; 1AN7 A; 1TUA A; 2VQE H; 4JI7 H; 2FFM A; 4DV5 H; 4FJU A; 1XMO H; 4OD6 A; 1VIG A; 2OPU A; 2CTL A; 5DT9 A; 1KHM A; 1FJG H; 4JI3 H; 4LF6 H; 2JA9 A; 1ZZK A; 4X62 H; 1WVN A; 1IBM H; 1XMQ H; 2VKC A; 2UXC H; 2QND A; 3J7A K; 4B3S H; 4GKK H; 1N34 H; 3GKU A; 4JI2 H; 5IT9 W; 4JV5 H; 1ODH A; 4JI6 H; 3GAB A; 4NXM H; 2DGR A; 1VBI A; 1X4N A; 1J4W A; 3I0P A; 2CTM A; 3SB1 A; 4DUY H; 3KDG A; 4X65 H; 2CTE A; 4WAL A; 3OSS D; 2FMR A; 2E3U A; 2K1H A; 1ZZI A; 2MJH A; 5LMN H; 4JVY A; 4DR5 H; 4OO1 G; 3FAU A; 4DR6 H; 5IWA H; 1VIH A; 5K36 G; 3QD7 X; 1V8C A; 5JEA G; #chains in the Genus database with same CATH homology 2CPM A; 2LRR A; 1MSZ A; 1WHR A; 3GKU A; 1UG8 A; 2A1S A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
