2VKC | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	105
structure length	105
Chain Sequence	MKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVMLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 105 atoms

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105 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Homo sapiens
publication title	Solution Structure and Characterization of the DNA- Binding Activity of the B3BP-Smr Domain. pubmed doi rcsb
molecule keywords	NEDD4-BINDING PROTEIN 2
total genus	32
structure length	105
sequence length	105
ec nomenclature
pdb deposition date	2007-12-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01713	Smr	Smr domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.110	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Ribosomal Protein S8; Chain: A, domain 1	2vkcA00

2D9IA 3QD7X 3FAUA 2ZQEA 4OD6A 4OCHA 2VKCA
chains in the Genus database with same CATH superfamily

3KDGA 3NCVA 2ANNA 2PY9A 3RF2A 5JEAG 2FMRA 4NBQA 1TUAA 4JVHA 2VQFH 2JE6I 4JYAH 5BR8H 2FPHX 3QD7X 4KHPH 4BA2I 1N32H 3EZJA 4LF8H 4DV3H 4DV6H 1J5KA 1WE8A 1HNZH 4GKJH 2QNDA 4BA1I 1I94H 2BA0A 4DR6H 1VBIA 3T1HH 4JVYA 1XMQH 3SB1A 2OPUA 1EC6A 1ZZIA 4DR4H 4LF5H 4X62H 2FFMA 1ZTGA 1K1GA 2LTLA 5K36G 2CTEA 4DV2H 2X06A 1IBKH 4X66H 2UXBH 2CTMA 4LFAH 1SEIA 3JAMW 4LFBH 3GKUA 3I0PA 4JI7H 4OO1G 2P2RA 2E5LH 1N33H 3FAUA 3AEVB 1V9NA 4NZRM 1XMOH 2HH3A 4NZTM 2NN6G 1WVNA 4OCHA 2G8YA 2UUBH 2ANRA 2JEAI 1X4MA 3UOEA 4GKKH 2BL5A 4JI8H 4YHHH 4DV7H 2UUCH 1MSZA 2M6QA 1XNRH 2F4VH 2CTJA 2OPVA 4FJUA 2JEBI 4DUYH 3J81W 4AIMA 2CPQA 4QMFB 2HH2A 1J5EH 3GABA 5FLXW 4H8AA 5IWAH 1HNWH 2MJHA 4JI0H 1XRHA 5LMNH 2JZXA 2K1HA 4B8CD 2AXYA 2CWFA 1DT4A 2DGRA 2JVZA 2HHHH 4NXMH 4X64H 4PDBA 2ZQEA 3V69A 2UXCH 2Z0SA 2VQEH 4X65H 4LF9H 1UG8A 2CTKA 4DR3H 2YQRA 4WALA 2CPMA 4JI5H 2E3UA 4JV5H 4B3MH 1J4WA 1VIHA 1AN7A 2CTLA 5A2QW 4YY3H 1N34H 1HR0H 1XNQH 2CTFA 4DR5H 2UUAH 3KDKA 3OETA 1FJGH 1WTJA 2PT7G 4B3RH 1Z2IA 4OD6A 3U1KA 4WANA 2PQUA 1VIGA 4IFDG 1X9ZA 2LTMA 4G08A 1X0AA 1IBMH 4DV1H 5IT9W 4LF7H 4EC5A 1V8CA 5C0XG 4DR1H 4AQYH 4OX9H 2D9IA 4DV4H 4JI1H 4LF6H 4DUZH 5DT9A 2A1SA 2CWHA 2JA9A 2VKCA 4DR2H 4DR7H 1ZZKA 1FKAH 1F0XA 1DTJA 3OTOH 4B3TH 1S20A 4NXNH 4JI4H 4DV0H 1KHMA 3J7AK 2Y3MA 1ZZJA 4LFCH 2O4CA 3J80W 4B3SH 5LL6b 4LIJA 4E9JA 3L7ZC 1S03G 4B8TA 4FJSA 1NXUA 1N36H 3VKEA 5LMUH 1WHRA 3OSSD 2LF0A 1HNXH 4JI3H 1IBLH 1ODHA 2UU9H 3T1YH 4JI6H 1X4NA 2M8WA 4K0KH 2LRRA 4JI2H 4LF4H 4AM3A 4DV5H 1PQXA 3GR5A 1I6UA 2ZM6H 2UXDH
chains in the Genus database with same CATH topology

3KDGA 3NCVA 3RF2A 2VQFH 4JYAH 5BR8H 2FPHX 3QD7X 4KHPH 1N32H 3EZJA 4LF8H 4DV3H 4DV6H 1HNZH 4GKJH 1I94H 4DR6H 3T1HH 1XMQH 3SB1A 4DR4H 4LF5H 4X62H 4DV2H 1IBKH 4X66H 2UXBH 4LFBH 4LFAH 1SEIA 3JAMW 4JI7H 2E5LH 1N33H 3FAUA 4NZRM 1XMOH 4NZTM 4OCHA 2UUBH 4GKKH 4JI8H 4YHHH 4DV7H 2UUCH 2F4VH 1XNRH 4DUYH 3J81W 1J5EH 3GABA 5FLXW 5IWAH 1HNWH 4JI0H 5LMNH 4B8CD 2HHHH 4NXMH 4X64H 4PDBA 2ZQEA 2UXCH 2VQEH 4X65H 4LF9H 4DR3H 4JI5H 4JV5H 4B3MH 1N34H 1AN7A 5A2QW 4YY3H 1HR0H 1XNQH 4DR5H 2UUAH 3KDKA 3OETA 1FJGH 2PT7G 4B3RH 4OD6A 1X9ZA 4G08A 1IBMH 4DV1H 5IT9W 4LF7H 4EC5A 4AQYH 4DR1H 4OX9H 2D9IA 4DV4H 4JI1H 4LF6H 4DUZH 5DT9A 4DR7H 2VKCA 4DR2H 1FKAH 1F0XA 3OTOH 4B3TH 4NXNH 4JI4H 4DV0H 3J7AK 2Y3MA 4LFCH 2O4CA 3J80W 4B3SH 5LL6b 4E9JA 1S03G 1N36H 5LMUH 3OSSD 2LF0A 1HNXH 4JI3H 1IBLH 1ODHA 2UU9H 3T1YH 4JI6H 4K0KH 4JI2H 4LF4H 4DV5H 3GR5A 1I6UA 2ZM6H 2UXDH
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2D9I A;  3QD7 X;  3FAU A;  2ZQE A;  4OD6 A;  4OCH A;  2VKC A; 
#chains in the Genus database with same CATH topology
 3KDG A;  3NCV A;  2ANN A;  2PY9 A;  3RF2 A;  5JEA G;  2FMR A;  4NBQ A;  1TUA A;  4JVH A;  2VQF H;  2JE6 I;  4JYA H;  5BR8 H;  2FPH X;  3QD7 X;  4KHP H;  4BA2 I;  1N32 H;  3EZJ A;  4LF8 H;  4DV3 H;  4DV6 H;  1J5K A;  1WE8 A;  1HNZ H;  4GKJ H;  2QND A;  4BA1 I;  1I94 H;  2BA0 A;  4DR6 H;  1VBI A;  3T1H H;  4JVY A;  1XMQ H;  3SB1 A;  2OPU A;  1EC6 A;  1ZZI A;  4DR4 H;  4LF5 H;  4X62 H;  2FFM A;  1ZTG A;  1K1G A;  2LTL A;  5K36 G;  2CTE A;  4DV2 H;  2X06 A;  1IBK H;  4X66 H;  2UXB H;  2CTM A;  4LFA H;  1SEI A;  3JAM W;  4LFB H;  3GKU A;  3I0P A;  4JI7 H;  4OO1 G;  2P2R A;  2E5L H;  1N33 H;  3FAU A;  3AEV B;  1V9N A;  4NZR M;  1XMO H;  2HH3 A;  4NZT M;  2NN6 G;  1WVN A;  4OCH A;  2G8Y A;  2UUB H;  2ANR A;  2JEA I;  1X4M A;  3UOE A;  4GKK H;  2BL5 A;  4JI8 H;  4YHH H;  4DV7 H;  2UUC H;  1MSZ A;  2M6Q A;  1XNR H;  2F4V H;  2CTJ A;  2OPV A;  4FJU A;  2JEB I;  4DUY H;  3J81 W;  4AIM A;  2CPQ A;  4QMF B;  2HH2 A;  1J5E H;  3GAB A;  5FLX W;  4H8A A;  5IWA H;  1HNW H;  2MJH A;  4JI0 H;  1XRH A;  5LMN H;  2JZX A;  2K1H A;  4B8C D;  2AXY A;  2CWF A;  1DT4 A;  2DGR A;  2JVZ A;  2HHH H;  4NXM H;  4X64 H;  4PDB A;  2ZQE A;  3V69 A;  2UXC H;  2Z0S A;  2VQE H;  4X65 H;  4LF9 H;  1UG8 A;  2CTK A;  4DR3 H;  2YQR A;  4WAL A;  2CPM A;  4JI5 H;  2E3U A;  4JV5 H;  4B3M H;  1J4W A;  1VIH A;  1AN7 A;  2CTL A;  5A2Q W;  4YY3 H;  1N34 H;  1HR0 H;  1XNQ H;  2CTF A;  4DR5 H;  2UUA H;  3KDK A;  3OET A;  1FJG H;  1WTJ A;  2PT7 G;  4B3R H;  1Z2I A;  4OD6 A;  3U1K A;  4WAN A;  2PQU A;  1VIG A;  4IFD G;  1X9Z A;  2LTM A;  4G08 A;  1X0A A;  1IBM H;  4DV1 H;  5IT9 W;  4LF7 H;  4EC5 A;  1V8C A;  5C0X G;  4DR1 H;  4AQY H;  4OX9 H;  2D9I A;  4DV4 H;  4JI1 H;  4LF6 H;  4DUZ H;  5DT9 A;  2A1S A;  2CWH A;  2JA9 A;  2VKC A;  4DR2 H;  4DR7 H;  1ZZK A;  1FKA H;  1F0X A;  1DTJ A;  3OTO H;  4B3T H;  1S20 A;  4NXN H;  4JI4 H;  4DV0 H;  1KHM A;  3J7A K;  2Y3M A;  1ZZJ A;  4LFC H;  2O4C A;  3J80 W;  4B3S H;  5LL6 b;  4LIJ A;  4E9J A;  3L7Z C;  1S03 G;  4B8T A;  4FJS A;  1NXU A;  1N36 H;  3VKE A;  5LMU H;  1WHR A;  3OSS D;  2LF0 A;  1HNX H;  4JI3 H;  1IBL H;  1ODH A;  2UU9 H;  3T1Y H;  4JI6 H;  1X4N A;  2M8W A;  4K0K H;  2LRR A;  4JI2 H;  4LF4 H;  4AM3 A;  4DV5 H;  1PQX A;  3GR5 A;  1I6U A;  2ZM6 H;  2UXD H; 
#chains in the Genus database with same CATH homology
 3KDG A;  3NCV A;  3RF2 A;  2VQF H;  4JYA H;  5BR8 H;  2FPH X;  3QD7 X;  4KHP H;  1N32 H;  3EZJ A;  4LF8 H;  4DV3 H;  4DV6 H;  1HNZ H;  4GKJ H;  1I94 H;  4DR6 H;  3T1H H;  1XMQ H;  3SB1 A;  4DR4 H;  4LF5 H;  4X62 H;  4DV2 H;  1IBK H;  4X66 H;  2UXB H;  4LFB H;  4LFA H;  1SEI A;  3JAM W;  4JI7 H;  2E5L H;  1N33 H;  3FAU A;  4NZR M;  1XMO H;  4NZT M;  4OCH A;  2UUB H;  4GKK H;  4JI8 H;  4YHH H;  4DV7 H;  2UUC H;  2F4V H;  1XNR H;  4DUY H;  3J81 W;  1J5E H;  3GAB A;  5FLX W;  5IWA H;  1HNW H;  4JI0 H;  5LMN H;  4B8C D;  2HHH H;  4NXM H;  4X64 H;  4PDB A;  2ZQE A;  2UXC H;  2VQE H;  4X65 H;  4LF9 H;  4DR3 H;  4JI5 H;  4JV5 H;  4B3M H;  1N34 H;  1AN7 A;  5A2Q W;  4YY3 H;  1HR0 H;  1XNQ H;  4DR5 H;  2UUA H;  3KDK A;  3OET A;  1FJG H;  2PT7 G;  4B3R H;  4OD6 A;  1X9Z A;  4G08 A;  1IBM H;  4DV1 H;  5IT9 W;  4LF7 H;  4EC5 A;  4AQY H;  4DR1 H;  4OX9 H;  2D9I A;  4DV4 H;  4JI1 H;  4LF6 H;  4DUZ H;  5DT9 A;  4DR7 H;  2VKC A;  4DR2 H;  1FKA H;  1F0X A;  3OTO H;  4B3T H;  4NXN H;  4JI4 H;  4DV0 H;  3J7A K;  2Y3M A;  4LFC H;  2O4C A;  3J80 W;  4B3S H;  5LL6 b;  4E9J A;  1S03 G;  1N36 H;  5LMU H;  3OSS D;  2LF0 A;  1HNX H;  4JI3 H;  1IBL H;  1ODH A;  2UU9 H;  3T1Y H;  4JI6 H;  4K0K H;  4JI2 H;  4LF4 H;  4DV5 H;  3GR5 A;  1I6U A;  2ZM6 H;  2UXD H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2VKCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations