3OSS | Genus

Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	45
sequence length	175
structure length	157
Chain Sequence	ATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMYIDTNNDGYIEGDELVLKVVKSAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 157 atoms

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157 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Escherichia coli
publication title	Structural and functional studies on the interaction of GspC and GspD in the type II secretion system. pubmed doi rcsb
molecule keywords	TYPE 2 SECRETION SYSTEM, GSPC
total genus	45
structure length	157
sequence length	175
ec nomenclature
pdb deposition date	2010-09-09

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.120	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Ribosomal Protein S8; Chain: A, domain 1	3ossD00

3GR5A 2Y3MA 4E9JA 4EC5A 3EZJA 4G08A 3OSSD
chains in the Genus database with same CATH superfamily

5IT9W 1WE8A 4KHPH 4E9JA 3T1YH 1K1GA 4LF7H 1F0XA 4X66H 2JZXA 2PT7G 4LF5H 2CTKA 3GKUA 4JI7H 2VQFH 2ANNA 4LF4H 2CTFA 5C0XG 4DV2H 1I94H 1HNZH 1SEIA 2UUAH 4PDBA 4AQYH 1ZZKA 1ZZIA 4BA1I 2O4CA 1NXUA 1XRHA 2LF0A 1X4NA 4NXNH 1HR0H 5LMUH 4X64H 1X0AA 5DT9A 2FMRA 3QD7X 4DV0H 1VBIA 1N36H 4DR6H 4DR7H 4DV5H 4OX9H 2UXCH 1J5EH 4JI3H 1ODHA 4BA2I 4NXMH 1S20A 4LF9H 4YHHH 4DV6H 2ZM6H 1S03G 5A2QW 1X4MA 2AXYA 1FKAH 1X9ZA 3UOEA 3U1KA 5LMNH 4DR2H 4JI0H 4GKKH 4B3TH 2G8YA 2UXBH 2D9IA 1I6UA 3RF2A 3J80W 4EC5A 2A1SA 4H8AA 2BL5A 2HH3A 3KDKA 3J81W 3KDGA 3VKEA 4LF6H 4LFCH 1VIGA 1IBKH 4NBQA 4YY3H 3I0PA 4G08A 4DUYH 4LFAH 2NN6G 1WVNA 2Z0SA 4QMFB 2Y3MA 4OD6A 5BR8H 1HNXH 2FPHX 4LF8H 2F4VH 5K36G 5IWAH 2UU9H 4DV4H 1V9NA 1XMOH 1FJGH 4NZTM 5LL6b 4DUZH 1N34H 3JAMW 4DV1H 4OCHA 2HHHH 2ZQEA 1VIHA 4X62H 4LIJA 2LTLA 4OO1G 4NZRM 2CPMA 3T1HH 1DT4A 2VKCA 2BA0A 2OPUA 2QNDA 3OTOH 2K1HA 2UXDH 3J7AK 1EC6A 1XMQH 2CTMA 4JI5H 4B3MH 1PQXA 2CTEA 4FJUA 4JYAH 3OSSD 4AM3A 1HNWH 3AEVB 4JI6H 4B8CD 2CPQA 2M6QA 4DR4H 2PY9A 2JEBI 4DV7H 5FLXW 2CTLA 1UG8A 2PQUA 2E5LH 4WANA 2X06A 4JV5H 4DR5H 3V69A 1V8CA 4WALA 1ZTGA 2JE6I 4B3RH 1KHMA 4JI8H 1XNQH 2HH2A 1WHRA 2M8WA 2E3UA 3NCVA 4JVHA 4AIMA 4IFDG 1IBLH 4DR3H 3OETA 1Z2IA 2CWFA 4JI1H 4GKJH 4JVYA 2LTMA 1ZZJA 2CTJA 2LRRA 2FFMA 1DTJA 1TUAA 3GR5A 2VQEH 4DV3H 4B3SH 1IBMH 4FJSA 1XNRH 2JA9A 1N33H 2OPVA 4X65H 2YQRA 5JEAG 2CWHA 1J5KA 2MJHA 2P2RA 4K0KH 3SB1A 1AN7A 3L7ZC 2ANRA 1WTJA 3GABA 4LFBH 3FAUA 2JVZA 4DR1H 2UUBH 2DGRA 2JEAI 4B8TA 1J4WA 4JI2H 1N32H 3EZJA 4JI4H 1MSZA 2UUCH
chains in the Genus database with same CATH topology

5IT9W 4KHPH 4E9JA 3T1YH 4LF7H 1F0XA 4X66H 2PT7G 4LF5H 4JI7H 2VQFH 4LF4H 1I94H 1HNZH 4DV2H 4PDBA 1SEIA 2UUAH 4AQYH 2O4CA 2LF0A 4NXNH 1HR0H 5LMUH 4X64H 5DT9A 3QD7X 4DV0H 1N36H 4DR6H 4DR7H 4DV5H 4OX9H 2UXCH 1J5EH 4JI3H 1ODHA 4NXMH 4LF9H 4YHHH 4DV6H 2ZM6H 1S03G 5A2QW 1FKAH 1X9ZA 4DR2H 5LMNH 4JI0H 4GKKH 2UXBH 4B3TH 2D9IA 1I6UA 3RF2A 3J80W 4EC5A 3J81W 3KDKA 3KDGA 4LF6H 4LFCH 1IBKH 4YY3H 4G08A 4DUYH 4LFAH 5BR8H 2Y3MA 4OD6A 1HNXH 2F4VH 2FPHX 4LF8H 5IWAH 2UU9H 4DV4H 1XMOH 1FJGH 4NZTM 5LL6b 4DUZH 1N34H 3JAMW 4DV1H 4OCHA 2HHHH 2ZQEA 4X62H 4NZRM 3T1HH 2VKCA 3OTOH 2UXDH 3J7AK 1XMQH 4JI5H 4B3MH 4JYAH 3OSSD 1HNWH 4JI6H 4B8CD 4DR4H 4DV7H 5FLXW 2E5LH 4JV5H 4DR5H 4B3RH 4JI8H 1XNQH 3NCVA 1IBLH 4DR3H 3OETA 4GKJH 4JI1H 3GR5A 2VQEH 4DV3H 4B3SH 1IBMH 1XNRH 1N33H 4X65H 4K0KH 3SB1A 1AN7A 3GABA 4LFBH 3FAUA 4DR1H 2UUBH 4JI2H 1N32H 3EZJA 4JI4H 2UUCH
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3GR5 A;  2Y3M A;  4E9J A;  4EC5 A;  3EZJ A;  4G08 A;  3OSS D; 
#chains in the Genus database with same CATH topology
 5IT9 W;  1WE8 A;  4KHP H;  4E9J A;  3T1Y H;  1K1G A;  4LF7 H;  1F0X A;  4X66 H;  2JZX A;  2PT7 G;  4LF5 H;  2CTK A;  3GKU A;  4JI7 H;  2VQF H;  2ANN A;  4LF4 H;  2CTF A;  5C0X G;  4DV2 H;  1I94 H;  1HNZ H;  1SEI A;  2UUA H;  4PDB A;  4AQY H;  1ZZK A;  1ZZI A;  4BA1 I;  2O4C A;  1NXU A;  1XRH A;  2LF0 A;  1X4N A;  4NXN H;  1HR0 H;  5LMU H;  4X64 H;  1X0A A;  5DT9 A;  2FMR A;  3QD7 X;  4DV0 H;  1VBI A;  1N36 H;  4DR6 H;  4DR7 H;  4DV5 H;  4OX9 H;  2UXC H;  1J5E H;  4JI3 H;  1ODH A;  4BA2 I;  4NXM H;  1S20 A;  4LF9 H;  4YHH H;  4DV6 H;  2ZM6 H;  1S03 G;  5A2Q W;  1X4M A;  2AXY A;  1FKA H;  1X9Z A;  3UOE A;  3U1K A;  5LMN H;  4DR2 H;  4JI0 H;  4GKK H;  4B3T H;  2G8Y A;  2UXB H;  2D9I A;  1I6U A;  3RF2 A;  3J80 W;  4EC5 A;  2A1S A;  4H8A A;  2BL5 A;  2HH3 A;  3KDK A;  3J81 W;  3KDG A;  3VKE A;  4LF6 H;  4LFC H;  1VIG A;  1IBK H;  4NBQ A;  4YY3 H;  3I0P A;  4G08 A;  4DUY H;  4LFA H;  2NN6 G;  1WVN A;  2Z0S A;  4QMF B;  2Y3M A;  4OD6 A;  5BR8 H;  1HNX H;  2FPH X;  4LF8 H;  2F4V H;  5K36 G;  5IWA H;  2UU9 H;  4DV4 H;  1V9N A;  1XMO H;  1FJG H;  4NZT M;  5LL6 b;  4DUZ H;  1N34 H;  3JAM W;  4DV1 H;  4OCH A;  2HHH H;  2ZQE A;  1VIH A;  4X62 H;  4LIJ A;  2LTL A;  4OO1 G;  4NZR M;  2CPM A;  3T1H H;  1DT4 A;  2VKC A;  2BA0 A;  2OPU A;  2QND A;  3OTO H;  2K1H A;  2UXD H;  3J7A K;  1EC6 A;  1XMQ H;  2CTM A;  4JI5 H;  4B3M H;  1PQX A;  2CTE A;  4FJU A;  4JYA H;  3OSS D;  4AM3 A;  1HNW H;  3AEV B;  4JI6 H;  4B8C D;  2CPQ A;  2M6Q A;  4DR4 H;  2PY9 A;  2JEB I;  4DV7 H;  5FLX W;  2CTL A;  1UG8 A;  2PQU A;  2E5L H;  4WAN A;  2X06 A;  4JV5 H;  4DR5 H;  3V69 A;  1V8C A;  4WAL A;  1ZTG A;  2JE6 I;  4B3R H;  1KHM A;  4JI8 H;  1XNQ H;  2HH2 A;  1WHR A;  2M8W A;  2E3U A;  3NCV A;  4JVH A;  4AIM A;  4IFD G;  1IBL H;  4DR3 H;  3OET A;  1Z2I A;  2CWF A;  4JI1 H;  4GKJ H;  4JVY A;  2LTM A;  1ZZJ A;  2CTJ A;  2LRR A;  2FFM A;  1DTJ A;  1TUA A;  3GR5 A;  2VQE H;  4DV3 H;  4B3S H;  1IBM H;  4FJS A;  1XNR H;  2JA9 A;  1N33 H;  2OPV A;  4X65 H;  2YQR A;  5JEA G;  2CWH A;  1J5K A;  2MJH A;  2P2R A;  4K0K H;  3SB1 A;  1AN7 A;  3L7Z C;  2ANR A;  1WTJ A;  3GAB A;  4LFB H;  3FAU A;  2JVZ A;  4DR1 H;  2UUB H;  2DGR A;  2JEA I;  4B8T A;  1J4W A;  4JI2 H;  1N32 H;  3EZJ A;  4JI4 H;  1MSZ A;  2UUC H; 
#chains in the Genus database with same CATH homology
 5IT9 W;  4KHP H;  4E9J A;  3T1Y H;  4LF7 H;  1F0X A;  4X66 H;  2PT7 G;  4LF5 H;  4JI7 H;  2VQF H;  4LF4 H;  1I94 H;  1HNZ H;  4DV2 H;  4PDB A;  1SEI A;  2UUA H;  4AQY H;  2O4C A;  2LF0 A;  4NXN H;  1HR0 H;  5LMU H;  4X64 H;  5DT9 A;  3QD7 X;  4DV0 H;  1N36 H;  4DR6 H;  4DR7 H;  4DV5 H;  4OX9 H;  2UXC H;  1J5E H;  4JI3 H;  1ODH A;  4NXM H;  4LF9 H;  4YHH H;  4DV6 H;  2ZM6 H;  1S03 G;  5A2Q W;  1FKA H;  1X9Z A;  4DR2 H;  5LMN H;  4JI0 H;  4GKK H;  2UXB H;  4B3T H;  2D9I A;  1I6U A;  3RF2 A;  3J80 W;  4EC5 A;  3J81 W;  3KDK A;  3KDG A;  4LF6 H;  4LFC H;  1IBK H;  4YY3 H;  4G08 A;  4DUY H;  4LFA H;  5BR8 H;  2Y3M A;  4OD6 A;  1HNX H;  2F4V H;  2FPH X;  4LF8 H;  5IWA H;  2UU9 H;  4DV4 H;  1XMO H;  1FJG H;  4NZT M;  5LL6 b;  4DUZ H;  1N34 H;  3JAM W;  4DV1 H;  4OCH A;  2HHH H;  2ZQE A;  4X62 H;  4NZR M;  3T1H H;  2VKC A;  3OTO H;  2UXD H;  3J7A K;  1XMQ H;  4JI5 H;  4B3M H;  4JYA H;  3OSS D;  1HNW H;  4JI6 H;  4B8C D;  4DR4 H;  4DV7 H;  5FLX W;  2E5L H;  4JV5 H;  4DR5 H;  4B3R H;  4JI8 H;  1XNQ H;  3NCV A;  1IBL H;  4DR3 H;  3OET A;  4GKJ H;  4JI1 H;  3GR5 A;  2VQE H;  4DV3 H;  4B3S H;  1IBM H;  1XNR H;  1N33 H;  4X65 H;  4K0K H;  3SB1 A;  1AN7 A;  3GAB A;  4LFB H;  3FAU A;  4DR1 H;  2UUB H;  4JI2 H;  1N32 H;  3EZJ A;  4JI4 H;  2UUC H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3OSSD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN