3OSSD

The crystal structure of enterotoxigenic escherichia coli gspc-gspd complex from the type ii secretion system
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
175
structure length
157
Chain Sequence
ATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMYIDTNNDGYIEGDELVLKVVKSAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional studies on the interaction of GspC and GspD in the type II secretion system.
pubmed doi rcsb
molecule tags Protein transport
source organism Escherichia coli
molecule keywords TYPE 2 SECRETION SYSTEM, GSPC
total genus 45
structure length 157
sequence length 175
ec nomenclature
pdb deposition date 2010-09-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 3ossD00
2Y3MA 3GR5A 3OSSD 4E9JA 3EZJA 4EC5A 4G08A
chains in the Genus database with same CATH superfamily
4DUZH 3GR5A 4JV5H 1EC6A 1DTJA 3QD7X 1VIGA 3U1KA 1WHRA 4DV0H 4DR3H 4LFAH 4EC5A 4DR1H 1VBIA 1TUAA 4DV6H 4JI0H 2JEAI 3OETA 4JI5H 4LFBH 2UUAH 1S20A 5LL6b 1SEIA 5DT9A 4OD6A 1IBKH 1I6UA 2O4CA 3I0PA 2PT7G 2UXDH 2ANNA 4PDBA 1K1GA 1I94H 2CPQA 1VIHA 1N34H 1HR0H 1S03G 1WE8A 1HNXH 2LTMA 3GKUA 2CTLA 2Z0SA 2CTFA 1X9ZA 4DR4H 2FPHX 4FJUA 4DV1H 3OTOH 2ZM6H 4IFDG 4JI3H 2NN6G 4BA1I 2UU9H 2VQFH 4B3SH 4OO1G 3UOEA 1X0AA 4GKJH 1WTJA 1WVNA 3V69A 4NXNH 2JZXA 1XMOH 2E3UA 4NBQA 4DV2H 1J5KA 1IBMH 2E5LH 3KDGA 1XRHA 4X66H 1DT4A 2OPVA 4YY3H 4G08A 1F0XA 3J81W 4B8TA 5A2QW 2HH2A 2PQUA 1AN7A 2JVZA 4LF9H 2VQEH 4B3MH 1V9NA 4JI8H 4JI2H 4JYAH 4WALA 4DV3H 2HHHH 2Y3MA 2YQRA 4QMFB 5IWAH 2CTEA 4X62H 4JI4H 2FFMA 4LF7H 2VKCA 2HH3A 1Z2IA 4DV4H 4DV7H 3VKEA 3T1YH 4K0KH 2FMRA 2OPUA 1KHMA 3J80W 3SB1A 3L7ZC 4LF8H 1NXUA 4WANA 1J4WA 4DUYH 5LMNH 2LRRA 2P2RA 4B3TH 2X06A 1UG8A 4LIJA 4OCHA 4KHPH 4LFCH 5K36G 4JVHA 1X4NA 1HNWH 3OSSD 3JAMW 4AQYH 4BA2I 5IT9W 4B8CD 1ZZIA 4JI6H 4B3RH 2D9IA 2DGRA 1J5EH 2ANRA 2K1HA 2M8WA 2BL5A 1N32H 4JI1H 2JA9A 1X4MA 4NZTM 4DR2H 2UUBH 3EZJA 2MJHA 2JE6I 2CTKA 4X64H 4LF6H 3RF2A 4X65H 3AEVB 2UXCH 3J7AK 3KDKA 1N36H 4NXMH 1ODHA 4LF5H 4H8AA 2CWFA 1FKAH 1HNZH 5JEAG 4AM3A 4JI7H 3NCVA 2BA0A 1ZTGA 1ZZKA 2G8YA 5LMUH 2M6QA 4NZRM 2A1SA 2CTMA 1XNQH 4JVYA 4FJSA 2ZQEA 2AXYA 1XNRH 2CTJA 1XMQH 4DR7H 4DR6H 1V8CA 4E9JA 2QNDA 4DV5H 5C0XG 1PQXA 3T1HH 2UUCH 2CPMA 2JEBI 5FLXW 4OX9H 1N33H 3GABA 2LTLA 2PY9A 1MSZA 3FAUA 4AIMA 1IBLH 4YHHH 4GKKH 1ZZJA 4DR5H 1FJGH 2UXBH 4LF4H 2F4VH 5BR8H 2CWHA 2LF0A
chains in the Genus database with same CATH topology
4DUZH 3GR5A 4JV5H 3QD7X 4LFAH 4DR3H 4EC5A 4DR1H 4DV6H 4JI0H 3OETA 4JI5H 4LFBH 2UUAH 5LL6b 1SEIA 5DT9A 4OD6A 1IBKH 1I6UA 2O4CA 2PT7G 2UXDH 4PDBA 1I94H 1N34H 1HR0H 1S03G 1HNXH 1X9ZA 4DR4H 2FPHX 4DV1H 3OTOH 2ZM6H 4JI3H 2UU9H 2VQFH 4B3SH 4GKJH 4NXNH 1XMOH 4DV2H 1IBMH 2E5LH 3KDGA 4X66H 4YY3H 4G08A 1F0XA 3J81W 5A2QW 1AN7A 4LF9H 2VQEH 4B3MH 4JI8H 4JI2H 4JYAH 4DV3H 2HHHH 2Y3MA 5IWAH 4X62H 4JI4H 4LF7H 4DV4H 2VKCA 4DV7H 3T1YH 4K0KH 3J80W 3SB1A 4LF8H 4DUYH 5LMNH 4B3TH 4OCHA 4KHPH 4LFCH 1HNWH 3OSSD 3JAMW 4AQYH 5IT9W 4B8CD 4JI6H 4B3RH 2D9IA 1J5EH 1N32H 4JI1H 4DR2H 4NZTM 2UUBH 3EZJA 4X64H 4LF6H 3RF2A 4X65H 2UXCH 3J7AK 3KDKA 1N36H 4NXMH 1ODHA 4LF5H 1FKAH 1HNZH 4JI7H 3NCVA 5LMUH 4NZRM 1XNQH 2ZQEA 1XNRH 1XMQH 4DR7H 4DR6H 4E9JA 4DV5H 3T1HH 2UUCH 5FLXW 4OX9H 1N33H 2LF0A 3GABA 3FAUA 1IBLH 4GKKH 4YHHH 1FJGH 4DR5H 2UXBH 4LF4H 2F4VH 5BR8H 4DV0H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y3M A;  3GR5 A;  3OSS D;  4E9J A;  3EZJ A;  4EC5 A;  4G08 A; 
#chains in the Genus database with same CATH topology
 4DUZ H;  3GR5 A;  4JV5 H;  1EC6 A;  1DTJ A;  3QD7 X;  1VIG A;  3U1K A;  1WHR A;  4DV0 H;  4DR3 H;  4LFA H;  4EC5 A;  4DR1 H;  1VBI A;  1TUA A;  4DV6 H;  4JI0 H;  2JEA I;  3OET A;  4JI5 H;  4LFB H;  2UUA H;  1S20 A;  5LL6 b;  1SEI A;  5DT9 A;  4OD6 A;  1IBK H;  1I6U A;  2O4C A;  3I0P A;  2PT7 G;  2UXD H;  2ANN A;  4PDB A;  1K1G A;  1I94 H;  2CPQ A;  1VIH A;  1N34 H;  1HR0 H;  1S03 G;  1WE8 A;  1HNX H;  2LTM A;  3GKU A;  2CTL A;  2Z0S A;  2CTF A;  1X9Z A;  4DR4 H;  2FPH X;  4FJU A;  4DV1 H;  3OTO H;  2ZM6 H;  4IFD G;  4JI3 H;  2NN6 G;  4BA1 I;  2UU9 H;  2VQF H;  4B3S H;  4OO1 G;  3UOE A;  1X0A A;  4GKJ H;  1WTJ A;  1WVN A;  3V69 A;  4NXN H;  2JZX A;  1XMO H;  2E3U A;  4NBQ A;  4DV2 H;  1J5K A;  1IBM H;  2E5L H;  3KDG A;  1XRH A;  4X66 H;  1DT4 A;  2OPV A;  4YY3 H;  4G08 A;  1F0X A;  3J81 W;  4B8T A;  5A2Q W;  2HH2 A;  2PQU A;  1AN7 A;  2JVZ A;  4LF9 H;  2VQE H;  4B3M H;  1V9N A;  4JI8 H;  4JI2 H;  4JYA H;  4WAL A;  4DV3 H;  2HHH H;  2Y3M A;  2YQR A;  4QMF B;  5IWA H;  2CTE A;  4X62 H;  4JI4 H;  2FFM A;  4LF7 H;  2VKC A;  2HH3 A;  1Z2I A;  4DV4 H;  4DV7 H;  3VKE A;  3T1Y H;  4K0K H;  2FMR A;  2OPU A;  1KHM A;  3J80 W;  3SB1 A;  3L7Z C;  4LF8 H;  1NXU A;  4WAN A;  1J4W A;  4DUY H;  5LMN H;  2LRR A;  2P2R A;  4B3T H;  2X06 A;  1UG8 A;  4LIJ A;  4OCH A;  4KHP H;  4LFC H;  5K36 G;  4JVH A;  1X4N A;  1HNW H;  3OSS D;  3JAM W;  4AQY H;  4BA2 I;  5IT9 W;  4B8C D;  1ZZI A;  4JI6 H;  4B3R H;  2D9I A;  2DGR A;  1J5E H;  2ANR A;  2K1H A;  2M8W A;  2BL5 A;  1N32 H;  4JI1 H;  2JA9 A;  1X4M A;  4NZT M;  4DR2 H;  2UUB H;  3EZJ A;  2MJH A;  2JE6 I;  2CTK A;  4X64 H;  4LF6 H;  3RF2 A;  4X65 H;  3AEV B;  2UXC H;  3J7A K;  3KDK A;  1N36 H;  4NXM H;  1ODH A;  4LF5 H;  4H8A A;  2CWF A;  1FKA H;  1HNZ H;  5JEA G;  4AM3 A;  4JI7 H;  3NCV A;  2BA0 A;  1ZTG A;  1ZZK A;  2G8Y A;  5LMU H;  2M6Q A;  4NZR M;  2A1S A;  2CTM A;  1XNQ H;  4JVY A;  4FJS A;  2ZQE A;  2AXY A;  1XNR H;  2CTJ A;  1XMQ H;  4DR7 H;  4DR6 H;  1V8C A;  4E9J A;  2QND A;  4DV5 H;  5C0X G;  1PQX A;  3T1H H;  2UUC H;  2CPM A;  2JEB I;  5FLX W;  4OX9 H;  1N33 H;  3GAB A;  2LTL A;  2PY9 A;  1MSZ A;  3FAU A;  4AIM A;  1IBL H;  4YHH H;  4GKK H;  1ZZJ A;  4DR5 H;  1FJG H;  2UXB H;  4LF4 H;  2F4V H;  5BR8 H;  2CWH A;  2LF0 A; 
#chains in the Genus database with same CATH homology
 4DUZ H;  3GR5 A;  4JV5 H;  3QD7 X;  4LFA H;  4DR3 H;  4EC5 A;  4DR1 H;  4DV6 H;  4JI0 H;  3OET A;  4JI5 H;  4LFB H;  2UUA H;  5LL6 b;  1SEI A;  5DT9 A;  4OD6 A;  1IBK H;  1I6U A;  2O4C A;  2PT7 G;  2UXD H;  4PDB A;  1I94 H;  1N34 H;  1HR0 H;  1S03 G;  1HNX H;  1X9Z A;  4DR4 H;  2FPH X;  4DV1 H;  3OTO H;  2ZM6 H;  4JI3 H;  2UU9 H;  2VQF H;  4B3S H;  4GKJ H;  4NXN H;  1XMO H;  4DV2 H;  1IBM H;  2E5L H;  3KDG A;  4X66 H;  4YY3 H;  4G08 A;  1F0X A;  3J81 W;  5A2Q W;  1AN7 A;  4LF9 H;  2VQE H;  4B3M H;  4JI8 H;  4JI2 H;  4JYA H;  4DV3 H;  2HHH H;  2Y3M A;  5IWA H;  4X62 H;  4JI4 H;  4LF7 H;  4DV4 H;  2VKC A;  4DV7 H;  3T1Y H;  4K0K H;  3J80 W;  3SB1 A;  4LF8 H;  4DUY H;  5LMN H;  4B3T H;  4OCH A;  4KHP H;  4LFC H;  1HNW H;  3OSS D;  3JAM W;  4AQY H;  5IT9 W;  4B8C D;  4JI6 H;  4B3R H;  2D9I A;  1J5E H;  1N32 H;  4JI1 H;  4DR2 H;  4NZT M;  2UUB H;  3EZJ A;  4X64 H;  4LF6 H;  3RF2 A;  4X65 H;  2UXC H;  3J7A K;  3KDK A;  1N36 H;  4NXM H;  1ODH A;  4LF5 H;  1FKA H;  1HNZ H;  4JI7 H;  3NCV A;  5LMU H;  4NZR M;  1XNQ H;  2ZQE A;  1XNR H;  1XMQ H;  4DR7 H;  4DR6 H;  4E9J A;  4DV5 H;  3T1H H;  2UUC H;  5FLX W;  4OX9 H;  1N33 H;  2LF0 A;  3GAB A;  3FAU A;  1IBL H;  4GKK H;  4YHH H;  1FJG H;  4DR5 H;  2UXB H;  4LF4 H;  2F4V H;  5BR8 H;  4DV0 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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