3QD7X

Crystal structure of ydal, a stand-alone small muts-related protein from escherichia coli
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
131
structure length
131
Chain Sequence
DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of YdaL, a stand-alone small MutS-related protein from Escherichia coli.
pubmed doi rcsb
molecule tags Hydrolase
source organism Escherichia coli
molecule keywords Uncharacterized protein ydaL
total genus 38
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 2011-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 3qd7X00
2ZQEA 3QD7X 4OD6A 2D9IA 2VKCA 4OCHA 3FAUA
chains in the Genus database with same CATH superfamily
4LFAH 2UU9H 4AIMA 2OPVA 2CTKA 2HH3A 2LRRA 4H8AA 1N36H 2JEBI 2PT7G 4JI4H 2HH2A 4DV6H 3JAMW 2PQUA 1X4MA 5JEAG 4YHHH 1NXUA 4LF6H 2JEAI 3UOEA 1KHMA 3OETA 2P2RA 2CPQA 2CWHA 4DR4H 4JVHA 5IT9W 1DT4A 3EZJA 2LTLA 2NN6G 4X64H 5IWAH 5LMNH 1V9NA 2M8WA 3T1YH 1J5KA 4DR6H 2BA0A 1EC6A 2G8YA 4DV4H 4G08A 4K0KH 4JI7H 1X9ZA 3NCVA 4X65H 2UXDH 3QD7X 4X66H 4GKKH 4NXNH 2UUCH 3RF2A 1HNWH 4B8CD 2VQEH 4DR3H 2A1SA 4WALA 1I94H 1AN7A 1SEIA 2OPUA 4B3MH 4WANA 1HR0H 4DV0H 4DUYH 4JI3H 4JVYA 2ANNA 4DR7H 1J5EH 1ZZJA 4B8TA 4AQYH 1IBKH 2CTLA 4LF9H 4LFBH 2CPMA 2CTJA 2E3UA 2FFMA 4NBQA 4DV1H 1S03G 5LMUH 4LF4H 2JA9A 1I6UA 5A2QW 2DGRA 4DV3H 2K1HA 1TUAA 4DUZH 3SB1A 1X0AA 2QNDA 4NZTM 1XNQH 1HNZH 2F4VH 1FKAH 2FMRA 4FJSA 1HNXH 4LF7H 2PY9A 1UG8A 4KHPH 1VIGA 4OX9H 1WTJA 2M6QA 4GKJH 4DR5H 4NXMH 5DT9A 2BL5A 4BA2I 4QMFB 4B3SH 1WVNA 4OD6A 2D9IA 5FLXW 3KDKA 5K36G 1PQXA 4DV2H 1J4WA 3AEVB 3J80W 2UUAH 1K1GA 2LF0A 2VQFH 1XMOH 4OO1G 4DV5H 4E9JA 4JYAH 1S20A 1MSZA 3GABA 4NZRM 2HHHH 4JI1H 1Z2IA 4YY3H 1WE8A 3KDGA 4LFCH 3OTOH 3J7AK 2AXYA 4BA1I 4DR2H 2UXCH 1VBIA 5C0XG 4LIJA 2LTMA 3FAUA 2ZQEA 1XRHA 3I0PA 2Z0SA 1DTJA 5BR8H 1V8CA 2VKCA 4OCHA 4JI8H 4FJUA 1ZZIA 4JI2H 4IFDG 1FJGH 4DR1H 3GR5A 3U1KA 2CTEA 1XNRH 2CWFA 4DV7H 2X06A 2E5LH 1VIHA 2JZXA 1ODHA 2ANRA 2UUBH 1F0XA 4JI0H 4AM3A 2JVZA 1ZZKA 3J81W 3OSSD 2CTFA 2YQRA 4B3RH 2MJHA 4PDBA 1X4NA 1ZTGA 3L7ZC 5LL6b 2ZM6H 1N32H 1IBLH 4EC5A 1N33H 1N34H 2CTMA 2Y3MA 4LF8H 2FPHX 1XMQH 2UXBH 1IBMH 4X62H 4JV5H 3VKEA 4B3TH 2JE6I 3GKUA 3T1HH 4JI5H 4JI6H 4LF5H 1WHRA 2O4CA 3V69A
chains in the Genus database with same CATH topology
4LFAH 2UU9H 1N36H 2PT7G 4JI4H 4DV6H 3JAMW 4YHHH 4LF6H 3OETA 4DR4H 5IT9W 3EZJA 4X64H 5IWAH 5LMNH 3T1YH 4DR6H 4DV4H 4G08A 4K0KH 4JI7H 1X9ZA 3NCVA 4X65H 2UXDH 3QD7X 4X66H 4GKKH 4NXNH 2UUCH 3RF2A 1HNWH 4B8CD 2VQEH 4DR3H 1I94H 1AN7A 1SEIA 4B3MH 1HR0H 4DV0H 4DUYH 4JI3H 4DR7H 1J5EH 4AQYH 1IBKH 4LF9H 4LFBH 4DV1H 1S03G 5LMUH 4LF4H 1I6UA 5A2QW 4DV3H 4DUZH 3SB1A 4NZTM 1XNQH 1HNZH 2F4VH 1FKAH 1HNXH 4KHPH 4OX9H 4GKJH 4DR5H 4NXMH 5DT9A 4B3SH 4OD6A 2D9IA 5FLXW 3KDKA 4DV2H 3J80W 2UUAH 2LF0A 2VQFH 1XMOH 4DV5H 4E9JA 4JYAH 4NZRM 3GABA 2HHHH 4JI1H 4YY3H 3KDGA 4LFCH 3OTOH 3J7AK 4DR2H 2UXCH 3FAUA 2ZQEA 5BR8H 2VKCA 4OCHA 4JI8H 4JI2H 1FJGH 4DR1H 3GR5A 1XNRH 4DV7H 2E5LH 1ODHA 2UUBH 1F0XA 4JI0H 3J81W 3OSSD 4B3RH 4PDBA 5LL6b 2ZM6H 1N32H 1IBLH 4EC5A 1N33H 1N34H 2Y3MA 4LF8H 2FPHX 1XMQH 2UXBH 1IBMH 4X62H 4JV5H 4B3TH 4JI6H 3T1HH 4JI5H 4LF5H 4LF7H 2O4CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZQE A;  3QD7 X;  4OD6 A;  2D9I A;  2VKC A;  4OCH A;  3FAU A; 
#chains in the Genus database with same CATH topology
 4LFA H;  2UU9 H;  4AIM A;  2OPV A;  2CTK A;  2HH3 A;  2LRR A;  4H8A A;  1N36 H;  2JEB I;  2PT7 G;  4JI4 H;  2HH2 A;  4DV6 H;  3JAM W;  2PQU A;  1X4M A;  5JEA G;  4YHH H;  1NXU A;  4LF6 H;  2JEA I;  3UOE A;  1KHM A;  3OET A;  2P2R A;  2CPQ A;  2CWH A;  4DR4 H;  4JVH A;  5IT9 W;  1DT4 A;  3EZJ A;  2LTL A;  2NN6 G;  4X64 H;  5IWA H;  5LMN H;  1V9N A;  2M8W A;  3T1Y H;  1J5K A;  4DR6 H;  2BA0 A;  1EC6 A;  2G8Y A;  4DV4 H;  4G08 A;  4K0K H;  4JI7 H;  1X9Z A;  3NCV A;  4X65 H;  2UXD H;  3QD7 X;  4X66 H;  4GKK H;  4NXN H;  2UUC H;  3RF2 A;  1HNW H;  4B8C D;  2VQE H;  4DR3 H;  2A1S A;  4WAL A;  1I94 H;  1AN7 A;  1SEI A;  2OPU A;  4B3M H;  4WAN A;  1HR0 H;  4DV0 H;  4DUY H;  4JI3 H;  4JVY A;  2ANN A;  4DR7 H;  1J5E H;  1ZZJ A;  4B8T A;  4AQY H;  1IBK H;  2CTL A;  4LF9 H;  4LFB H;  2CPM A;  2CTJ A;  2E3U A;  2FFM A;  4NBQ A;  4DV1 H;  1S03 G;  5LMU H;  4LF4 H;  2JA9 A;  1I6U A;  5A2Q W;  2DGR A;  4DV3 H;  2K1H A;  1TUA A;  4DUZ H;  3SB1 A;  1X0A A;  2QND A;  4NZT M;  1XNQ H;  1HNZ H;  2F4V H;  1FKA H;  2FMR A;  4FJS A;  1HNX H;  4LF7 H;  2PY9 A;  1UG8 A;  4KHP H;  1VIG A;  4OX9 H;  1WTJ A;  2M6Q A;  4GKJ H;  4DR5 H;  4NXM H;  5DT9 A;  2BL5 A;  4BA2 I;  4QMF B;  4B3S H;  1WVN A;  4OD6 A;  2D9I A;  5FLX W;  3KDK A;  5K36 G;  1PQX A;  4DV2 H;  1J4W A;  3AEV B;  3J80 W;  2UUA H;  1K1G A;  2LF0 A;  2VQF H;  1XMO H;  4OO1 G;  4DV5 H;  4E9J A;  4JYA H;  1S20 A;  1MSZ A;  3GAB A;  4NZR M;  2HHH H;  4JI1 H;  1Z2I A;  4YY3 H;  1WE8 A;  3KDG A;  4LFC H;  3OTO H;  3J7A K;  2AXY A;  4BA1 I;  4DR2 H;  2UXC H;  1VBI A;  5C0X G;  4LIJ A;  2LTM A;  3FAU A;  2ZQE A;  1XRH A;  3I0P A;  2Z0S A;  1DTJ A;  5BR8 H;  1V8C A;  2VKC A;  4OCH A;  4JI8 H;  4FJU A;  1ZZI A;  4JI2 H;  4IFD G;  1FJG H;  4DR1 H;  3GR5 A;  3U1K A;  2CTE A;  1XNR H;  2CWF A;  4DV7 H;  2X06 A;  2E5L H;  1VIH A;  2JZX A;  1ODH A;  2ANR A;  2UUB H;  1F0X A;  4JI0 H;  4AM3 A;  2JVZ A;  1ZZK A;  3J81 W;  3OSS D;  2CTF A;  2YQR A;  4B3R H;  2MJH A;  4PDB A;  1X4N A;  1ZTG A;  3L7Z C;  5LL6 b;  2ZM6 H;  1N32 H;  1IBL H;  4EC5 A;  1N33 H;  1N34 H;  2CTM A;  2Y3M A;  4LF8 H;  2FPH X;  1XMQ H;  2UXB H;  1IBM H;  4X62 H;  4JV5 H;  3VKE A;  4B3T H;  2JE6 I;  3GKU A;  3T1H H;  4JI5 H;  4JI6 H;  4LF5 H;  1WHR A;  2O4C A;  3V69 A; 
#chains in the Genus database with same CATH homology
 4LFA H;  2UU9 H;  1N36 H;  2PT7 G;  4JI4 H;  4DV6 H;  3JAM W;  4YHH H;  4LF6 H;  3OET A;  4DR4 H;  5IT9 W;  3EZJ A;  4X64 H;  5IWA H;  5LMN H;  3T1Y H;  4DR6 H;  4DV4 H;  4G08 A;  4K0K H;  4JI7 H;  1X9Z A;  3NCV A;  4X65 H;  2UXD H;  3QD7 X;  4X66 H;  4GKK H;  4NXN H;  2UUC H;  3RF2 A;  1HNW H;  4B8C D;  2VQE H;  4DR3 H;  1I94 H;  1AN7 A;  1SEI A;  4B3M H;  1HR0 H;  4DV0 H;  4DUY H;  4JI3 H;  4DR7 H;  1J5E H;  4AQY H;  1IBK H;  4LF9 H;  4LFB H;  4DV1 H;  1S03 G;  5LMU H;  4LF4 H;  1I6U A;  5A2Q W;  4DV3 H;  4DUZ H;  3SB1 A;  4NZT M;  1XNQ H;  1HNZ H;  2F4V H;  1FKA H;  1HNX H;  4KHP H;  4OX9 H;  4GKJ H;  4DR5 H;  4NXM H;  5DT9 A;  4B3S H;  4OD6 A;  2D9I A;  5FLX W;  3KDK A;  4DV2 H;  3J80 W;  2UUA H;  2LF0 A;  2VQF H;  1XMO H;  4DV5 H;  4E9J A;  4JYA H;  4NZR M;  3GAB A;  2HHH H;  4JI1 H;  4YY3 H;  3KDG A;  4LFC H;  3OTO H;  3J7A K;  4DR2 H;  2UXC H;  3FAU A;  2ZQE A;  5BR8 H;  2VKC A;  4OCH A;  4JI8 H;  4JI2 H;  1FJG H;  4DR1 H;  3GR5 A;  1XNR H;  4DV7 H;  2E5L H;  1ODH A;  2UUB H;  1F0X A;  4JI0 H;  3J81 W;  3OSS D;  4B3R H;  4PDB A;  5LL6 b;  2ZM6 H;  1N32 H;  1IBL H;  4EC5 A;  1N33 H;  1N34 H;  2Y3M A;  4LF8 H;  2FPH X;  1XMQ H;  2UXB H;  1IBM H;  4X62 H;  4JV5 H;  4B3T H;  4JI6 H;  3T1H H;  4JI5 H;  4LF5 H;  4LF7 H;  2O4C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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