3QD7 | Genus

Total Genus 38

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	131
structure length	131
Chain Sequence	DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Escherichia coli
publication title	Crystal structure of YdaL, a stand-alone small MutS-related protein from Escherichia coli. pubmed doi rcsb
molecule keywords	Uncharacterized protein ydaL
total genus	38
structure length	131
sequence length	131
ec nomenclature
pdb deposition date	2011-01-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF01713	Smr	Smr domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.110	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Ribosomal Protein S8; Chain: A, domain 1	3qd7X00

2VKCA 2D9IA 2ZQEA 3FAUA 3QD7X 4OD6A 4OCHA
chains in the Genus database with same CATH superfamily

2JE6I 4WANA 2JEBI 2ANNA 4LFAH 1S03G 2F4VH 4B3TH 4JI4H 4K0KH 4JI3H 4DV2H 2Y3MA 4LFCH 1HNWH 1X4NA 2M8WA 4AQYH 3GR5A 1FKAH 2DGRA 4DR3H 4WALA 4B8TA 1I94H 2MJHA 2OPUA 4GKKH 3OETA 2PQUA 2UXBH 1N32H 2LTMA 1VIGA 4JI2H 4DUZH 2AXYA 4B3SH 1TUAA 1J5EH 1IBMH 2Z0SA 4DV4H 4JI7H 4DV7H 2VKCA 4FJUA 3V69A 1HNZH 4QMFB 4EC5A 3J80W 3FAUA 3VKEA 1F0XA 5JEAG 4B8CD 2CTFA 2FPHX 2JA9A 5C0XG 3OTOH 1VIHA 2BL5A 4JVHA 2UXDH 2ZQEA 4X65H 1WE8A 2M6QA 3T1YH 1X9ZA 4DR1H 4JI8H 4LF5H 4DR5H 2FFMA 3KDKA 4YHHH 2ANRA 3GABA 4DV1H 1NXUA 2QNDA 2LRRA 2UUCH 4JI5H 2P2RA 4LF7H 2HH3A 2UXCH 2CTLA 4NXMH 2O4CA 2A1SA 4KHPH 1V9NA 4H8AA 3NCVA 3SB1A 4NXNH 1FJGH 1N36H 4AIMA 2NN6G 2VQFH 4DV0H 3OSSD 5K36G 2E5LH 2CPMA 4E9JA 4DR7H 4BA1I 1ZZKA 2CTMA 1S20A 4NBQA 5LMNH 4NZTM 2CWFA 5IWAH 3L7ZC 3UOEA 1WHRA 2HH2A 1XMQH 4JV5H 4LFBH 5BR8H 1DT4A 3J81W 1AN7A 4JI1H 4AM3A 4DR6H 2K1HA 4JYAH 1N34H 1IBLH 4BA2I 1ZZIA 3J7AK 4JI0H 5FLXW 3KDGA 4X62H 1IBKH 1I6UA 1XNRH 1ZTGA 1J4WA 1DTJA 1V8CA 2G8YA 3T1HH 4DV5H 1SEIA 1J5KA 4JI6H 4G08A 3I0PA 2FMRA 3AEVB 1Z2IA 5LMUH 1XRHA 4B3MH 4OX9H 1MSZA 5A2QW 2YQRA 1HR0H 3RF2A 4LF4H 2UUAH 2BA0A 1ZZJA 2VQEH 5LL6b 1XMOH 1WVNA 4B3RH 1PQXA 4DV3H 4JVYA 3JAMW 4DUYH 2PY9A 1N33H 2LTLA 5DT9A 2ZM6H 4FJSA 2LF0A 1X0AA 4LIJA 3GKUA 4LF8H 2CWHA 2CTEA 4OO1G 2UUBH 2OPVA 3QD7X 4DR2H 2CPQA 4DR4H 4OD6A 4PDBA 1K1GA 2JEAI 4X64H 3EZJA 1KHMA 4LF9H 2D9IA 1X4MA 1WTJA 1UG8A 4NZRM 2CTJA 4LF6H 4DV6H 1ODHA 2HHHH 2CTKA 2E3UA 2JVZA 2JZXA 4X66H 1XNQH 4YY3H 5IT9W 1HNXH 1VBIA 3U1KA 2UU9H 4IFDG 2PT7G 4OCHA 1EC6A 4GKJH 2X06A
chains in the Genus database with same CATH topology

4LFAH 1S03G 2F4VH 4B3TH 4JI4H 4K0KH 4JI3H 4DV2H 2Y3MA 4LFCH 1HNWH 4AQYH 3GR5A 1FKAH 4DR3H 1I94H 4GKKH 3OETA 2UXBH 1N32H 4JI2H 4DUZH 4B3SH 1J5EH 1IBMH 4DV4H 4JI7H 4DV7H 2VKCA 1HNZH 4EC5A 3J80W 3FAUA 1F0XA 4B8CD 2FPHX 3OTOH 2UXDH 2ZQEA 4X65H 3T1YH 1X9ZA 4DR1H 4JI8H 4LF5H 4DR5H 3KDKA 4YHHH 3GABA 4DV1H 2UUCH 4JI5H 4LF7H 2UXCH 4NXMH 2O4CA 4KHPH 3SB1A 3NCVA 4NXNH 1FJGH 1N36H 2VQFH 4DV0H 3OSSD 2E5LH 4DR7H 4E9JA 5LMNH 4NZTM 5IWAH 1XMQH 4JV5H 4LFBH 5BR8H 3J81W 1AN7A 4JI1H 4DR6H 4JYAH 1N34H 1IBLH 3J7AK 4JI0H 5FLXW 3KDGA 4X62H 1IBKH 1I6UA 1XNRH 3T1HH 4DV5H 1SEIA 4JI6H 4G08A 5LMUH 4B3MH 4OX9H 5A2QW 1HR0H 3RF2A 4LF4H 2UUAH 2VQEH 5LL6b 1XMOH 4B3RH 1N33H 4DV3H 3JAMW 4DUYH 5DT9A 2ZM6H 2LF0A 4LF8H 2UUBH 3QD7X 4DR2H 4DR4H 4PDBA 4OD6A 4X64H 3EZJA 4LF9H 2D9IA 4NZRM 4LF6H 4DV6H 1ODHA 2HHHH 4X66H 5IT9W 1XNQH 4YY3H 1HNXH 2UU9H 2PT7G 4OCHA 4GKJH
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2VKC A;  2D9I A;  2ZQE A;  3FAU A;  3QD7 X;  4OD6 A;  4OCH A; 
#chains in the Genus database with same CATH topology
 2JE6 I;  4WAN A;  2JEB I;  2ANN A;  4LFA H;  1S03 G;  2F4V H;  4B3T H;  4JI4 H;  4K0K H;  4JI3 H;  4DV2 H;  2Y3M A;  4LFC H;  1HNW H;  1X4N A;  2M8W A;  4AQY H;  3GR5 A;  1FKA H;  2DGR A;  4DR3 H;  4WAL A;  4B8T A;  1I94 H;  2MJH A;  2OPU A;  4GKK H;  3OET A;  2PQU A;  2UXB H;  1N32 H;  2LTM A;  1VIG A;  4JI2 H;  4DUZ H;  2AXY A;  4B3S H;  1TUA A;  1J5E H;  1IBM H;  2Z0S A;  4DV4 H;  4JI7 H;  4DV7 H;  2VKC A;  4FJU A;  3V69 A;  1HNZ H;  4QMF B;  4EC5 A;  3J80 W;  3FAU A;  3VKE A;  1F0X A;  5JEA G;  4B8C D;  2CTF A;  2FPH X;  2JA9 A;  5C0X G;  3OTO H;  1VIH A;  2BL5 A;  4JVH A;  2UXD H;  2ZQE A;  4X65 H;  1WE8 A;  2M6Q A;  3T1Y H;  1X9Z A;  4DR1 H;  4JI8 H;  4LF5 H;  4DR5 H;  2FFM A;  3KDK A;  4YHH H;  2ANR A;  3GAB A;  4DV1 H;  1NXU A;  2QND A;  2LRR A;  2UUC H;  4JI5 H;  2P2R A;  4LF7 H;  2HH3 A;  2UXC H;  2CTL A;  4NXM H;  2O4C A;  2A1S A;  4KHP H;  1V9N A;  4H8A A;  3NCV A;  3SB1 A;  4NXN H;  1FJG H;  1N36 H;  4AIM A;  2NN6 G;  2VQF H;  4DV0 H;  3OSS D;  5K36 G;  2E5L H;  2CPM A;  4E9J A;  4DR7 H;  4BA1 I;  1ZZK A;  2CTM A;  1S20 A;  4NBQ A;  5LMN H;  4NZT M;  2CWF A;  5IWA H;  3L7Z C;  3UOE A;  1WHR A;  2HH2 A;  1XMQ H;  4JV5 H;  4LFB H;  5BR8 H;  1DT4 A;  3J81 W;  1AN7 A;  4JI1 H;  4AM3 A;  4DR6 H;  2K1H A;  4JYA H;  1N34 H;  1IBL H;  4BA2 I;  1ZZI A;  3J7A K;  4JI0 H;  5FLX W;  3KDG A;  4X62 H;  1IBK H;  1I6U A;  1XNR H;  1ZTG A;  1J4W A;  1DTJ A;  1V8C A;  2G8Y A;  3T1H H;  4DV5 H;  1SEI A;  1J5K A;  4JI6 H;  4G08 A;  3I0P A;  2FMR A;  3AEV B;  1Z2I A;  5LMU H;  1XRH A;  4B3M H;  4OX9 H;  1MSZ A;  5A2Q W;  2YQR A;  1HR0 H;  3RF2 A;  4LF4 H;  2UUA H;  2BA0 A;  1ZZJ A;  2VQE H;  5LL6 b;  1XMO H;  1WVN A;  4B3R H;  1PQX A;  4DV3 H;  4JVY A;  3JAM W;  4DUY H;  2PY9 A;  1N33 H;  2LTL A;  5DT9 A;  2ZM6 H;  4FJS A;  2LF0 A;  1X0A A;  4LIJ A;  3GKU A;  4LF8 H;  2CWH A;  2CTE A;  4OO1 G;  2UUB H;  2OPV A;  3QD7 X;  4DR2 H;  2CPQ A;  4DR4 H;  4OD6 A;  4PDB A;  1K1G A;  2JEA I;  4X64 H;  3EZJ A;  1KHM A;  4LF9 H;  2D9I A;  1X4M A;  1WTJ A;  1UG8 A;  4NZR M;  2CTJ A;  4LF6 H;  4DV6 H;  1ODH A;  2HHH H;  2CTK A;  2E3U A;  2JVZ A;  2JZX A;  4X66 H;  1XNQ H;  4YY3 H;  5IT9 W;  1HNX H;  1VBI A;  3U1K A;  2UU9 H;  4IFD G;  2PT7 G;  4OCH A;  1EC6 A;  4GKJ H;  2X06 A; 
#chains in the Genus database with same CATH homology
 4LFA H;  1S03 G;  2F4V H;  4B3T H;  4JI4 H;  4K0K H;  4JI3 H;  4DV2 H;  2Y3M A;  4LFC H;  1HNW H;  4AQY H;  3GR5 A;  1FKA H;  4DR3 H;  1I94 H;  4GKK H;  3OET A;  2UXB H;  1N32 H;  4JI2 H;  4DUZ H;  4B3S H;  1J5E H;  1IBM H;  4DV4 H;  4JI7 H;  4DV7 H;  2VKC A;  1HNZ H;  4EC5 A;  3J80 W;  3FAU A;  1F0X A;  4B8C D;  2FPH X;  3OTO H;  2UXD H;  2ZQE A;  4X65 H;  3T1Y H;  1X9Z A;  4DR1 H;  4JI8 H;  4LF5 H;  4DR5 H;  3KDK A;  4YHH H;  3GAB A;  4DV1 H;  2UUC H;  4JI5 H;  4LF7 H;  2UXC H;  4NXM H;  2O4C A;  4KHP H;  3SB1 A;  3NCV A;  4NXN H;  1FJG H;  1N36 H;  2VQF H;  4DV0 H;  3OSS D;  2E5L H;  4DR7 H;  4E9J A;  5LMN H;  4NZT M;  5IWA H;  1XMQ H;  4JV5 H;  4LFB H;  5BR8 H;  3J81 W;  1AN7 A;  4JI1 H;  4DR6 H;  4JYA H;  1N34 H;  1IBL H;  3J7A K;  4JI0 H;  5FLX W;  3KDG A;  4X62 H;  1IBK H;  1I6U A;  1XNR H;  3T1H H;  4DV5 H;  1SEI A;  4JI6 H;  4G08 A;  5LMU H;  4B3M H;  4OX9 H;  5A2Q W;  1HR0 H;  3RF2 A;  4LF4 H;  2UUA H;  2VQE H;  5LL6 b;  1XMO H;  4B3R H;  1N33 H;  4DV3 H;  3JAM W;  4DUY H;  5DT9 A;  2ZM6 H;  2LF0 A;  4LF8 H;  2UUB H;  3QD7 X;  4DR2 H;  4DR4 H;  4PDB A;  4OD6 A;  4X64 H;  3EZJ A;  4LF9 H;  2D9I A;  4NZR M;  4LF6 H;  4DV6 H;  1ODH A;  2HHH H;  4X66 H;  5IT9 W;  1XNQ H;  4YY3 H;  1HNX H;  2UU9 H;  2PT7 G;  4OCH A;  4GKJ H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3QD7X

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations