3SB1 | Genus

Total Genus 35

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	120
structure length	119
Chain Sequence	ARSGNALPLLREIAEHLHHLLETGEASTIDLSALPLTPGDLEWLRAELGGGEVSVTLHDGASTLDETAFPGVWWIIHRNAQGAVTTQFIEVAFVPELVKSPRADVAAARAALVLRMADL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Thiobacillus denitrificans
publication title	Hydrogenase expression protein HupH from Thiobacillus denitrificans ATCC 25259 rcsb
molecule keywords	hydrogenase expression protein
total genus	35
structure length	119
sequence length	120
chains with identical sequence	B
ec nomenclature
pdb deposition date	2011-06-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04809	HupH_C	HupH hydrogenase expression protein, C-terminal conserved region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.140	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Ribosomal Protein S8; Chain: A, domain 1	3sb1A01

3SB1A
chains in the Genus database with same CATH superfamily

4E9JA 1I94H 4OCHA 2FMRA 5K36G 4OD6A 4AQYH 1J4WA 1J5EH 2CTJA 4LFCH 2CWHA 3L7ZC 1S20A 4DUYH 2UXCH 2JVZA 3EZJA 1WVNA 2CTEA 4JI2H 3J80W 2ZQEA 3J7AK 4B8TA 5LMNH 1N36H 1XRHA 2LTLA 2LTMA 4H8AA 4NBQA 1N32H 1N34H 4PDBA 2CPQA 1WHRA 2UUBH 3OTOH 4B3TH 4LF6H 2LRRA 1EC6A 3J81W 2P2RA 4LF8H 2JZXA 3V69A 2JA9A 3UOEA 2X06A 2UXDH 2NN6G 5JEAG 4X62H 2E5LH 1X9ZA 2K1HA 4JI4H 1TUAA 4AM3A 4KHPH 1DTJA 1Z2IA 4G08A 3RF2A 1NXUA 1HNWH 4DR2H 4JI6H 2ANRA 4WANA 4DV1H 1HR0H 2OPUA 1IBKH 1XMQH 4DV6H 2CTFA 2A1SA 4X66H 1V8CA 1FKAH 2ZM6H 2M8WA 4DUZH 4B3RH 2UXBH 3T1HH 4DR6H 1VIGA 4DV3H 4NXNH 2JEBI 4FJSA 2D9IA 1ZZIA 1ZZJA 3KDGA 2VQFH 1X4MA 1MSZA 2G8YA 1WE8A 1ODHA 4JI8H 1IBMH 2HHHH 2PY9A 3QD7X 4IFDG 2JE6I 2CPMA 2HH3A 1V9NA 4LFBH 2E3UA 4JVYA 3T1YH 2CTLA 3OSSD 4EC5A 4DV7H 4JI7H 3SB1A 2OPVA 1IBLH 1HNXH 4LFAH 4JV5H 4WALA 2AXYA 4NXMH 3JAMW 4LF7H 2MJHA 4YY3H 4FJUA 2PT7G 4DV4H 3AEVB 1DT4A 2FPHX 3NCVA 3I0PA 4DV0H 4X64H 4JI0H 4JVHA 3FAUA 1S03G 4DV5H 1UG8A 2BA0A 3VKEA 1XMOH 4JI5H 2JEAI 4BA1I 4DR5H 4NZTM 4DV2H 4LIJA 1FJGH 1SEIA 2DGRA 4K0KH 2Y3MA 2CTMA 2BL5A 2VKCA 2Z0SA 3OETA 1VIHA 2O4CA 4B8CD 2YQRA 5C0XG 1ZTGA 1N33H 3GKUA 5A2QW 4JI3H 4OO1G 5LMUH 2ANNA 4LF9H 2M6QA 2FFMA 4B3SH 1AN7A 4DR1H 1PQXA 1VBIA 2PQUA 4DR4H 4GKKH 4NZRM 1HNZH 1F0XA 1X0AA 3KDKA 2UU9H 1WTJA 3U1KA 4YHHH 1KHMA 2UUCH 3GABA 2CWFA 2HH2A 4JI1H 4GKJH 1ZZKA 2CTKA 1XNRH 1I6UA 5IWAH 1X4NA 2VQEH 4X65H 4LF4H 2LF0A 4BA2I 4QMFB 4AIMA 4OX9H 3GR5A 4B3MH 4DR7H 5LL6b 4DR3H 5FLXW 2QNDA 5BR8H 1K1GA 4LF5H 2UUAH 4JYAH 5IT9W 1XNQH 5DT9A 1J5KA 2F4VH
chains in the Genus database with same CATH topology

4E9JA 1I94H 4OCHA 4OD6A 4AQYH 1J5EH 4LFCH 4DUYH 2UXCH 3EZJA 4JI2H 3J80W 2ZQEA 3J7AK 5LMNH 1N36H 1N32H 1N34H 4PDBA 2UUBH 3OTOH 4B3TH 4LF6H 3J81W 4LF8H 2UXDH 2E5LH 4X62H 4KHPH 1X9ZA 4JI4H 4G08A 3RF2A 1HNWH 4DR2H 4JI6H 4DV1H 1HR0H 1IBKH 1XMQH 4DV6H 4X66H 1FKAH 2ZM6H 4DUZH 4B3RH 2UXBH 3T1HH 4DR6H 4DV3H 4NXNH 2D9IA 3KDGA 2VQFH 1ODHA 4JI8H 1IBMH 2HHHH 3QD7X 4LFBH 3T1YH 3OSSD 4EC5A 4DV7H 4JI7H 3SB1A 1IBLH 4LFAH 1HNXH 4JV5H 4NXMH 3JAMW 4LF7H 4YY3H 4DV4H 2PT7G 3NCVA 2FPHX 4DV0H 4X64H 4JI0H 3FAUA 1S03G 4DV5H 1XMOH 4JI5H 4DR5H 4NZTM 4DV2H 1FJGH 1SEIA 4K0KH 2Y3MA 2VKCA 4B8CD 3OETA 2O4CA 1N33H 5A2QW 4JI3H 5LMUH 4LF9H 4B3SH 1AN7A 4DR1H 4DR4H 4GKKH 4NZRM 1HNZH 1F0XA 3KDKA 2UU9H 4YHHH 2UUCH 3GABA 4GKJH 4JI1H 1I6UA 1XNRH 5IWAH 2VQEH 4LF4H 4X65H 2LF0A 4OX9H 3GR5A 4B3MH 4DR7H 5LL6b 4DR3H 5FLXW 5BR8H 4LF5H 2UUAH 4JYAH 5IT9W 1XNQH 5DT9A 2F4VH
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3SB1 A; 
#chains in the Genus database with same CATH topology
 4E9J A;  1I94 H;  4OCH A;  2FMR A;  5K36 G;  4OD6 A;  4AQY H;  1J4W A;  1J5E H;  2CTJ A;  4LFC H;  2CWH A;  3L7Z C;  1S20 A;  4DUY H;  2UXC H;  2JVZ A;  3EZJ A;  1WVN A;  2CTE A;  4JI2 H;  3J80 W;  2ZQE A;  3J7A K;  4B8T A;  5LMN H;  1N36 H;  1XRH A;  2LTL A;  2LTM A;  4H8A A;  4NBQ A;  1N32 H;  1N34 H;  4PDB A;  2CPQ A;  1WHR A;  2UUB H;  3OTO H;  4B3T H;  4LF6 H;  2LRR A;  1EC6 A;  3J81 W;  2P2R A;  4LF8 H;  2JZX A;  3V69 A;  2JA9 A;  3UOE A;  2X06 A;  2UXD H;  2NN6 G;  5JEA G;  4X62 H;  2E5L H;  1X9Z A;  2K1H A;  4JI4 H;  1TUA A;  4AM3 A;  4KHP H;  1DTJ A;  1Z2I A;  4G08 A;  3RF2 A;  1NXU A;  1HNW H;  4DR2 H;  4JI6 H;  2ANR A;  4WAN A;  4DV1 H;  1HR0 H;  2OPU A;  1IBK H;  1XMQ H;  4DV6 H;  2CTF A;  2A1S A;  4X66 H;  1V8C A;  1FKA H;  2ZM6 H;  2M8W A;  4DUZ H;  4B3R H;  2UXB H;  3T1H H;  4DR6 H;  1VIG A;  4DV3 H;  4NXN H;  2JEB I;  4FJS A;  2D9I A;  1ZZI A;  1ZZJ A;  3KDG A;  2VQF H;  1X4M A;  1MSZ A;  2G8Y A;  1WE8 A;  1ODH A;  4JI8 H;  1IBM H;  2HHH H;  2PY9 A;  3QD7 X;  4IFD G;  2JE6 I;  2CPM A;  2HH3 A;  1V9N A;  4LFB H;  2E3U A;  4JVY A;  3T1Y H;  2CTL A;  3OSS D;  4EC5 A;  4DV7 H;  4JI7 H;  3SB1 A;  2OPV A;  1IBL H;  1HNX H;  4LFA H;  4JV5 H;  4WAL A;  2AXY A;  4NXM H;  3JAM W;  4LF7 H;  2MJH A;  4YY3 H;  4FJU A;  2PT7 G;  4DV4 H;  3AEV B;  1DT4 A;  2FPH X;  3NCV A;  3I0P A;  4DV0 H;  4X64 H;  4JI0 H;  4JVH A;  3FAU A;  1S03 G;  4DV5 H;  1UG8 A;  2BA0 A;  3VKE A;  1XMO H;  4JI5 H;  2JEA I;  4BA1 I;  4DR5 H;  4NZT M;  4DV2 H;  4LIJ A;  1FJG H;  1SEI A;  2DGR A;  4K0K H;  2Y3M A;  2CTM A;  2BL5 A;  2VKC A;  2Z0S A;  3OET A;  1VIH A;  2O4C A;  4B8C D;  2YQR A;  5C0X G;  1ZTG A;  1N33 H;  3GKU A;  5A2Q W;  4JI3 H;  4OO1 G;  5LMU H;  2ANN A;  4LF9 H;  2M6Q A;  2FFM A;  4B3S H;  1AN7 A;  4DR1 H;  1PQX A;  1VBI A;  2PQU A;  4DR4 H;  4GKK H;  4NZR M;  1HNZ H;  1F0X A;  1X0A A;  3KDK A;  2UU9 H;  1WTJ A;  3U1K A;  4YHH H;  1KHM A;  2UUC H;  3GAB A;  2CWF A;  2HH2 A;  4JI1 H;  4GKJ H;  1ZZK A;  2CTK A;  1XNR H;  1I6U A;  5IWA H;  1X4N A;  2VQE H;  4X65 H;  4LF4 H;  2LF0 A;  4BA2 I;  4QMF B;  4AIM A;  4OX9 H;  3GR5 A;  4B3M H;  4DR7 H;  5LL6 b;  4DR3 H;  5FLX W;  2QND A;  5BR8 H;  1K1G A;  4LF5 H;  2UUA H;  4JYA H;  5IT9 W;  1XNQ H;  5DT9 A;  1J5K A;  2F4V H; 
#chains in the Genus database with same CATH homology
 4E9J A;  1I94 H;  4OCH A;  4OD6 A;  4AQY H;  1J5E H;  4LFC H;  4DUY H;  2UXC H;  3EZJ A;  4JI2 H;  3J80 W;  2ZQE A;  3J7A K;  5LMN H;  1N36 H;  1N32 H;  1N34 H;  4PDB A;  2UUB H;  3OTO H;  4B3T H;  4LF6 H;  3J81 W;  4LF8 H;  2UXD H;  2E5L H;  4X62 H;  4KHP H;  1X9Z A;  4JI4 H;  4G08 A;  3RF2 A;  1HNW H;  4DR2 H;  4JI6 H;  4DV1 H;  1HR0 H;  1IBK H;  1XMQ H;  4DV6 H;  4X66 H;  1FKA H;  2ZM6 H;  4DUZ H;  4B3R H;  2UXB H;  3T1H H;  4DR6 H;  4DV3 H;  4NXN H;  2D9I A;  3KDG A;  2VQF H;  1ODH A;  4JI8 H;  1IBM H;  2HHH H;  3QD7 X;  4LFB H;  3T1Y H;  3OSS D;  4EC5 A;  4DV7 H;  4JI7 H;  3SB1 A;  1IBL H;  4LFA H;  1HNX H;  4JV5 H;  4NXM H;  3JAM W;  4LF7 H;  4YY3 H;  4DV4 H;  2PT7 G;  3NCV A;  2FPH X;  4DV0 H;  4X64 H;  4JI0 H;  3FAU A;  1S03 G;  4DV5 H;  1XMO H;  4JI5 H;  4DR5 H;  4NZT M;  4DV2 H;  1FJG H;  1SEI A;  4K0K H;  2Y3M A;  2VKC A;  4B8C D;  3OET A;  2O4C A;  1N33 H;  5A2Q W;  4JI3 H;  5LMU H;  4LF9 H;  4B3S H;  1AN7 A;  4DR1 H;  4DR4 H;  4GKK H;  4NZR M;  1HNZ H;  1F0X A;  3KDK A;  2UU9 H;  4YHH H;  2UUC H;  3GAB A;  4GKJ H;  4JI1 H;  1I6U A;  1XNR H;  5IWA H;  2VQE H;  4LF4 H;  4X65 H;  2LF0 A;  4OX9 H;  3GR5 A;  4B3M H;  4DR7 H;  5LL6 b;  4DR3 H;  5FLX W;  5BR8 H;  4LF5 H;  2UUA H;  4JYA H;  5IT9 W;  1XNQ H;  5DT9 A;  2F4V H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3SB1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations