3V69A

Filia-n crystal structure
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
116
structure length
116
Chain Sequence
ASLKRFQTLVPLDHKQGTLFEIIGEPKLPKWFHVECLEDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAHYCRMKLMEIE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (61-69)TVIII1 (9-12)S2 (20-23)S1 (13-17)S4 (72-76)EMPTYTI1 (30-33)3H1 (35-38)S5 (84-89)TVIII2 (38-41)S3 (42-46)AH1 (49-55)AH3 (92-114)3H2 (57-59)TI2 (79-82)TII'1 (17-20)Updating...
connected with : NaN
molecule tags Protein binding
source organism Mus musculus
publication title The N-terminus of FILIA Forms an Atypical KH Domain with a Unique Extension Involved in Interaction with RNA.
pubmed doi rcsb
molecule keywords Protein Filia
total genus 27
structure length 116
sequence length 116
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16005 MOEP19 KH-like RNA-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 3v69A00
2OPUA 2YQRA 2ANNA 2PQUA 2CTLA 2JA9A 2JEBI 3L7ZC 1ZZJA 2JEAI 2CTJA 2JVZA 2NN6G 4AM3A 4IFDG 5K36G 2CTKA 2BL5A 2ANRA 1TUAA 1J4WA 2E3UA 4WANA 1WVNA 4QMFB 2P2RA 1X4NA 4WALA 1VIHA 4JVYA 4AIMA 4LIJA 2AXYA 4OO1G 1ZZIA 1DTJA 3AEVB 1J5KA 1ZTGA 2CTMA 2JZXA 2FMRA 5JEAG 1EC6A 2BA0A 2HH3A 3V69A 2Z0SA 1DT4A 2MJHA 3U1KA 1VIGA 2HH2A 4JVHA 2CTEA 4BA1I 2PY9A 2OPVA 2JE6I 1K1GA 1X4MA 2CPQA 5C0XG 1ZZKA 2DGRA 2QNDA 4B8TA 4BA2I 1WE8A 2CTFA 4NBQA 3VKEA 1KHMA
chains in the Genus database with same CATH superfamily
2ANNA 2PQUA 2JA9A 2JEBI 1ZZJA 2E5LH 4AM3A 2CTJA 2JVZA 1Z2IA 3T1HH 1I6UA 5IT9W 1F0XA 1J4WA 4WANA 2VKCA 1WVNA 1V8CA 4QMFB 1X0AA 1ODHA 1VIHA 1HR0H 2AXYA 4DR3H 3I0PA 1ZZIA 1DTJA 3QD7X 3AEVB 1J5KA 1ZTGA 2CTMA 2FMRA 5JEAG 4DV6H 2BA0A 4G08A 2MJHA 4X62H 1S20A 3UOEA 4JI4H 4DV0H 4DV3H 1IBLH 2JE6I 3J80W 2UUCH 4DUZH 4NZRM 2UU9H 1ZZKA 1N36H 4OX9H 2HHHH 1IBMH 2O4CA 2QNDA 2CWHA 5IWAH 1WE8A 1SEIA 4NBQA 4NZTM 5BR8H 3J81W 1XRHA 3L7ZC 2UUAH 4NXMH 4B3MH 4DR6H 2LRRA 4DR7H 4AQYH 2CTKA 2LF0A 2M8WA 4LF9H 1WTJA 4LF4H 4LFAH 3FAUA 4B3RH 3JAMW 1UG8A 4JVYA 4DV5H 4X65H 4LFCH 4NXNH 2ZM6H 1WHRA 2G8YA 3KDKA 1XMQH 1J5EH 1I94H 3SB1A 1HNZH 2UUBH 2HH3A 3V69A 2Z0SA 1DT4A 4B3SH 2LTMA 5LL6b 4DV7H 1X9ZA 1VBIA 4GKJH 4GKKH 4FJSA 2A1SA 5C0XG 2PT7G 4B8CD 2DGRA 4OD6A 2UXCH 3GR5A 4BA2I 3T1YH 2M6QA 2OPUA 2YQRA 4DUYH 4JI5H 3GABA 2CTLA 4B3TH 5K36G 2NN6G 4EC5A 2UXDH 2CPMA 2CWFA 1IBKH 4JI6H 1XMOH 4JI2H 3OTOH 1TUAA 2D9IA 2P2RA 1X4NA 4WALA 2X06A 2VQFH 1HNXH 4JYAH 4LFBH 1N34H 4K0KH 4JV5H 4X64H 4JI0H 4DR2H 1EC6A 4H8AA 5FLXW 3EZJA 4E9JA 4PDBA 4JI7H 1S03G 3U1KA 4DV4H 1N32H 2FPHX 4BA1I 1XNQH 2OPVA 4FJUA 1K1GA 1HNWH 3OSSD 3OETA 5A2QW 5LMNH 4LF5H 3GKUA 4LF8H 3J7AK 4KHPH 4DR1H 4LF6H 4DR4H 3KDGA 1PQXA 2CTFA 2PY9A 1KHMA 2Y3MA 5LMUH 4JVHA 1MSZA 2JEAI 1N33H 4IFDG 2ANRA 2BL5A 1FKAH 2E3UA 4YY3H 5DT9A 2LTLA 4JI3H 1NXUA 4LIJA 4AIMA 4DR5H 4OO1G 2UXBH 4JI8H 4OCHA 2JZXA 2VQEH 2ZQEA 4LF7H 1VIGA 2HH2A 2CTEA 1FJGH 1X4MA 3RF2A 4X66H 4DV1H 1XNRH 2CPQA 1V9NA 4DV2H 2FFMA 4JI1H 2F4VH 4YHHH 4B8TA 2K1HA 1AN7A 3VKEA 3NCVA
chains in the Genus database with same CATH topology
2OPUA 2YQRA 2ANNA 2PQUA 2CTLA 2JA9A 2JEBI 3L7ZC 1ZZJA 2JEAI 2CTJA 2JVZA 2NN6G 4AM3A 4IFDG 5K36G 2CTKA 2BL5A 2ANRA 1TUAA 1J4WA 2E3UA 4WANA 1WVNA 4QMFB 2P2RA 1X4NA 4WALA 1VIHA 4JVYA 4AIMA 4LIJA 2AXYA 4OO1G 1ZZIA 1DTJA 3AEVB 1J5KA 1ZTGA 2CTMA 2JZXA 2FMRA 5JEAG 1EC6A 2BA0A 2HH3A 3V69A 2Z0SA 1DT4A 2MJHA 3U1KA 1VIGA 2HH2A 4JVHA 2CTEA 4BA1I 2PY9A 2OPVA 2JE6I 1K1GA 1X4MA 2CPQA 5C0XG 1ZZKA 2DGRA 2QNDA 4B8TA 4BA2I 1WE8A 2CTFA 4NBQA 3VKEA 1KHMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OPU A;  2YQR A;  2ANN A;  2PQU A;  2CTL A;  2JA9 A;  2JEB I;  3L7Z C;  1ZZJ A;  2JEA I;  2CTJ A;  2JVZ A;  2NN6 G;  4AM3 A;  4IFD G;  5K36 G;  2CTK A;  2BL5 A;  2ANR A;  1TUA A;  1J4W A;  2E3U A;  4WAN A;  1WVN A;  4QMF B;  2P2R A;  1X4N A;  4WAL A;  1VIH A;  4JVY A;  4AIM A;  4LIJ A;  2AXY A;  4OO1 G;  1ZZI A;  1DTJ A;  3AEV B;  1J5K A;  1ZTG A;  2CTM A;  2JZX A;  2FMR A;  5JEA G;  1EC6 A;  2BA0 A;  2HH3 A;  3V69 A;  2Z0S A;  1DT4 A;  2MJH A;  3U1K A;  1VIG A;  2HH2 A;  4JVH A;  2CTE A;  4BA1 I;  2PY9 A;  2OPV A;  2JE6 I;  1K1G A;  1X4M A;  2CPQ A;  5C0X G;  1ZZK A;  2DGR A;  2QND A;  4B8T A;  4BA2 I;  1WE8 A;  2CTF A;  4NBQ A;  3VKE A;  1KHM A; 
#chains in the Genus database with same CATH topology
 2ANN A;  2PQU A;  2JA9 A;  2JEB I;  1ZZJ A;  2E5L H;  4AM3 A;  2CTJ A;  2JVZ A;  1Z2I A;  3T1H H;  1I6U A;  5IT9 W;  1F0X A;  1J4W A;  4WAN A;  2VKC A;  1WVN A;  1V8C A;  4QMF B;  1X0A A;  1ODH A;  1VIH A;  1HR0 H;  2AXY A;  4DR3 H;  3I0P A;  1ZZI A;  1DTJ A;  3QD7 X;  3AEV B;  1J5K A;  1ZTG A;  2CTM A;  2FMR A;  5JEA G;  4DV6 H;  2BA0 A;  4G08 A;  2MJH A;  4X62 H;  1S20 A;  3UOE A;  4JI4 H;  4DV0 H;  4DV3 H;  1IBL H;  2JE6 I;  3J80 W;  2UUC H;  4DUZ H;  4NZR M;  2UU9 H;  1ZZK A;  1N36 H;  4OX9 H;  2HHH H;  1IBM H;  2O4C A;  2QND A;  2CWH A;  5IWA H;  1WE8 A;  1SEI A;  4NBQ A;  4NZT M;  5BR8 H;  3J81 W;  1XRH A;  3L7Z C;  2UUA H;  4NXM H;  4B3M H;  4DR6 H;  2LRR A;  4DR7 H;  4AQY H;  2CTK A;  2LF0 A;  2M8W A;  4LF9 H;  1WTJ A;  4LF4 H;  4LFA H;  3FAU A;  4B3R H;  3JAM W;  1UG8 A;  4JVY A;  4DV5 H;  4X65 H;  4LFC H;  4NXN H;  2ZM6 H;  1WHR A;  2G8Y A;  3KDK A;  1XMQ H;  1J5E H;  1I94 H;  3SB1 A;  1HNZ H;  2UUB H;  2HH3 A;  3V69 A;  2Z0S A;  1DT4 A;  4B3S H;  2LTM A;  5LL6 b;  4DV7 H;  1X9Z A;  1VBI A;  4GKJ H;  4GKK H;  4FJS A;  2A1S A;  5C0X G;  2PT7 G;  4B8C D;  2DGR A;  4OD6 A;  2UXC H;  3GR5 A;  4BA2 I;  3T1Y H;  2M6Q A;  2OPU A;  2YQR A;  4DUY H;  4JI5 H;  3GAB A;  2CTL A;  4B3T H;  5K36 G;  2NN6 G;  4EC5 A;  2UXD H;  2CPM A;  2CWF A;  1IBK H;  4JI6 H;  1XMO H;  4JI2 H;  3OTO H;  1TUA A;  2D9I A;  2P2R A;  1X4N A;  4WAL A;  2X06 A;  2VQF H;  1HNX H;  4JYA H;  4LFB H;  1N34 H;  4K0K H;  4JV5 H;  4X64 H;  4JI0 H;  4DR2 H;  1EC6 A;  4H8A A;  5FLX W;  3EZJ A;  4E9J A;  4PDB A;  4JI7 H;  1S03 G;  3U1K A;  4DV4 H;  1N32 H;  2FPH X;  4BA1 I;  1XNQ H;  2OPV A;  4FJU A;  1K1G A;  1HNW H;  3OSS D;  3OET A;  5A2Q W;  5LMN H;  4LF5 H;  3GKU A;  4LF8 H;  3J7A K;  4KHP H;  4DR1 H;  4LF6 H;  4DR4 H;  3KDG A;  1PQX A;  2CTF A;  2PY9 A;  1KHM A;  2Y3M A;  5LMU H;  4JVH A;  1MSZ A;  2JEA I;  1N33 H;  4IFD G;  2ANR A;  2BL5 A;  1FKA H;  2E3U A;  4YY3 H;  5DT9 A;  2LTL A;  4JI3 H;  1NXU A;  4LIJ A;  4AIM A;  4DR5 H;  4OO1 G;  2UXB H;  4JI8 H;  4OCH A;  2JZX A;  2VQE H;  2ZQE A;  4LF7 H;  1VIG A;  2HH2 A;  2CTE A;  1FJG H;  1X4M A;  3RF2 A;  4X66 H;  4DV1 H;  1XNR H;  2CPQ A;  1V9N A;  4DV2 H;  2FFM A;  4JI1 H;  2F4V H;  4YHH H;  4B8T A;  2K1H A;  1AN7 A;  3VKE A;  3NCV A; 
#chains in the Genus database with same CATH homology
 2OPU A;  2YQR A;  2ANN A;  2PQU A;  2CTL A;  2JA9 A;  2JEB I;  3L7Z C;  1ZZJ A;  2JEA I;  2CTJ A;  2JVZ A;  2NN6 G;  4AM3 A;  4IFD G;  5K36 G;  2CTK A;  2BL5 A;  2ANR A;  1TUA A;  1J4W A;  2E3U A;  4WAN A;  1WVN A;  4QMF B;  2P2R A;  1X4N A;  4WAL A;  1VIH A;  4JVY A;  4AIM A;  4LIJ A;  2AXY A;  4OO1 G;  1ZZI A;  1DTJ A;  3AEV B;  1J5K A;  1ZTG A;  2CTM A;  2JZX A;  2FMR A;  5JEA G;  1EC6 A;  2BA0 A;  2HH3 A;  3V69 A;  2Z0S A;  1DT4 A;  2MJH A;  3U1K A;  1VIG A;  2HH2 A;  4JVH A;  2CTE A;  4BA1 I;  2PY9 A;  2OPV A;  2JE6 I;  1K1G A;  1X4M A;  2CPQ A;  5C0X G;  1ZZK A;  2DGR A;  2QND A;  4B8T A;  4BA2 I;  1WE8 A;  2CTF A;  4NBQ A;  3VKE A;  1KHM A; 
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