4FJS | Genus

Total Genus 109

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	109
sequence length	337
structure length	337
Chain Sequence	MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALY

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Escherichia coli
publication title	Structural and functional insights into (s)-ureidoglycolate dehydrogenase, a metabolic branch point enzyme in nitrogen utilization. pubmed doi rcsb
molecule keywords	Ureidoglycolate dehydrogenase
total genus	109
structure length	337
sequence length	337
chains with identical sequence	B
ec nomenclature	ec 1.1.1.154: Ureidoglycolate dehydrogenase.
pdb deposition date	2012-06-12

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1530.10	Mainly Alpha	Orthogonal Bundle	Hypothetical Oxidoreductase Yiak; Chain: A, domain 1	Hypothetical Oxidoreductase Yiak; Chain: A, domain 1	4fjsA01
3.30.1370.60	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Hypothetical oxidoreductase yiak; domain 2	4fjsA02

4FJUA 4FJSA 1Z2IA 1XRHA 2CWHA 2G8YA 4H8AA 3I0PA 1S20A 1NXUA 1WTJA 2X06A 1X0AA 1VBIA 3UOEA 1V9NA 2CWFA
chains in the Genus database with same CATH superfamily

4X66H 4DR1H 2BA0A 2CTLA 4LF4H 1XRHA 3OETA 3J7AK 2CPMA 2MJHA 1S20A 4YY3H 3RF2A 4DV3H 2LTMA 3GKUA 2HHHH 1S03G 2CPQA 5JEAG 2YQRA 1K1GA 4JVHA 3V69A 2OPUA 4JI6H 5A2QW 2X06A 4JI0H 1VBIA 2UXCH 2E3UA 2JEAI 2UUAH 1DTJA 1ZTGA 4JI7H 2JA9A 1XMOH 1N34H 4LFCH 3I0PA 3GABA 4JVYA 3UOEA 4DR2H 2FPHX 1TUAA 5BR8H 1FJGH 4K0KH 1HNXH 4JI1H 3KDGA 2CTEA 1J5KA 1Z2IA 1WE8A 1IBLH 4IFDG 5FLXW 1HR0H 1I6UA 2M6QA 3J81W 2UU9H 4B3TH 4LF5H 2VQFH 5C0XG 4DUYH 1N33H 2DGRA 1HNZH 2HH3A 2CTKA 2OPVA 2QNDA 4QMFB 2ZQEA 3GR5A 4DV0H 4JV5H 2JEBI 2FMRA 4NBQA 4KHPH 1EC6A 1UG8A 4DV7H 1J5EH 1J4WA 1IBKH 2CTFA 4WANA 1ZZKA 2A1SA 2UXDH 4BA1I 3KDKA 4JYAH 3QD7X 2NN6G 2LF0A 4DV1H 4AM3A 2PT7G 4JI5H 2VQEH 2LTLA 1WHRA 4DR6H 4JI4H 5K36G 4OX9H 3OSSD 2E5LH 2UUBH 2P2RA 1DT4A 4OD6A 4OCHA 2JVZA 3SB1A 5LMNH 2UUCH 4FJSA 2G8YA 4JI3H 1XNQH 1X4NA 2JE6I 2Y3MA 1ODHA 1X0AA 2HH2A 2F4VH 3J80W 1IBMH 4JI8H 4B3RH 2CTJA 4DR7H 4X64H 4LFBH 4H8AA 5LMUH 1WTJA 1XMQH 2ANRA 2AXYA 2BL5A 5DT9A 2LRRA 4WALA 3JAMW 1FKAH 2ANNA 1VIHA 4LF8H 4G08A 1NXUA 4YHHH 4LIJA 4DR4H 2CTMA 4GKKH 2O4CA 3AEVB 4DUZH 4BA2I 1V8CA 2M8WA 2PY9A 4DR5H 4OO1G 4DV5H 2UXBH 4DR3H 3T1HH 4LF6H 3OTOH 1XNRH 3T1YH 2CWHA 2K1HA 3FAUA 4E9JA 1MSZA 1VIGA 4DV4H 1ZZIA 4LF9H 1HNWH 1X9ZA 4FJUA 2PQUA 1SEIA 5LL6b 1I94H 4B3SH 4LF7H 1F0XA 4B8CD 4PDBA 2JZXA 4DV2H 1AN7A 5IT9W 4AQYH 3L7ZC 4B8TA 2Z0SA 1N36H 4AIMA 4JI2H 4X65H 2ZM6H 4EC5A 1N32H 1ZZJA 4B3MH 1V9NA 2CWFA 3U1KA 4X62H 4NZRM 4GKJH 2D9IA 2FFMA 4NZTM 5IWAH 1PQXA 3EZJA 2VKCA 1KHMA 1WVNA 4LFAH 3VKEA 1X4MA 4NXMH 4NXNH 3NCVA 4DV6H
chains in the Genus database with same CATH topology

4FJUA 4FJSA 1Z2IA 1XRHA 2CWHA 2G8YA 4H8AA 3I0PA 1S20A 1NXUA 1WTJA 2X06A 1X0AA 1VBIA 3UOEA 1V9NA 2CWFA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4FJU A;  4FJS A;  1Z2I A;  1XRH A;  2CWH A;  2G8Y A;  4H8A A;  3I0P A;  1S20 A;  1NXU A;  1WTJ A;  2X06 A;  1X0A A;  1VBI A;  3UOE A;  1V9N A;  2CWF A; 
#chains in the Genus database with same CATH topology
 4X66 H;  4DR1 H;  2BA0 A;  2CTL A;  4LF4 H;  1XRH A;  3OET A;  3J7A K;  2CPM A;  2MJH A;  1S20 A;  4YY3 H;  3RF2 A;  4DV3 H;  2LTM A;  3GKU A;  2HHH H;  1S03 G;  2CPQ A;  5JEA G;  2YQR A;  1K1G A;  4JVH A;  3V69 A;  2OPU A;  4JI6 H;  5A2Q W;  2X06 A;  4JI0 H;  1VBI A;  2UXC H;  2E3U A;  2JEA I;  2UUA H;  1DTJ A;  1ZTG A;  4JI7 H;  2JA9 A;  1XMO H;  1N34 H;  4LFC H;  3I0P A;  3GAB A;  4JVY A;  3UOE A;  4DR2 H;  2FPH X;  1TUA A;  5BR8 H;  1FJG H;  4K0K H;  1HNX H;  4JI1 H;  3KDG A;  2CTE A;  1J5K A;  1Z2I A;  1WE8 A;  1IBL H;  4IFD G;  5FLX W;  1HR0 H;  1I6U A;  2M6Q A;  3J81 W;  2UU9 H;  4B3T H;  4LF5 H;  2VQF H;  5C0X G;  4DUY H;  1N33 H;  2DGR A;  1HNZ H;  2HH3 A;  2CTK A;  2OPV A;  2QND A;  4QMF B;  2ZQE A;  3GR5 A;  4DV0 H;  4JV5 H;  2JEB I;  2FMR A;  4NBQ A;  4KHP H;  1EC6 A;  1UG8 A;  4DV7 H;  1J5E H;  1J4W A;  1IBK H;  2CTF A;  4WAN A;  1ZZK A;  2A1S A;  2UXD H;  4BA1 I;  3KDK A;  4JYA H;  3QD7 X;  2NN6 G;  2LF0 A;  4DV1 H;  4AM3 A;  2PT7 G;  4JI5 H;  2VQE H;  2LTL A;  1WHR A;  4DR6 H;  4JI4 H;  5K36 G;  4OX9 H;  3OSS D;  2E5L H;  2UUB H;  2P2R A;  1DT4 A;  4OD6 A;  4OCH A;  2JVZ A;  3SB1 A;  5LMN H;  2UUC H;  4FJS A;  2G8Y A;  4JI3 H;  1XNQ H;  1X4N A;  2JE6 I;  2Y3M A;  1ODH A;  1X0A A;  2HH2 A;  2F4V H;  3J80 W;  1IBM H;  4JI8 H;  4B3R H;  2CTJ A;  4DR7 H;  4X64 H;  4LFB H;  4H8A A;  5LMU H;  1WTJ A;  1XMQ H;  2ANR A;  2AXY A;  2BL5 A;  5DT9 A;  2LRR A;  4WAL A;  3JAM W;  1FKA H;  2ANN A;  1VIH A;  4LF8 H;  4G08 A;  1NXU A;  4YHH H;  4LIJ A;  4DR4 H;  2CTM A;  4GKK H;  2O4C A;  3AEV B;  4DUZ H;  4BA2 I;  1V8C A;  2M8W A;  2PY9 A;  4DR5 H;  4OO1 G;  4DV5 H;  2UXB H;  4DR3 H;  3T1H H;  4LF6 H;  3OTO H;  1XNR H;  3T1Y H;  2CWH A;  2K1H A;  3FAU A;  4E9J A;  1MSZ A;  1VIG A;  4DV4 H;  1ZZI A;  4LF9 H;  1HNW H;  1X9Z A;  4FJU A;  2PQU A;  1SEI A;  5LL6 b;  1I94 H;  4B3S H;  4LF7 H;  1F0X A;  4B8C D;  4PDB A;  2JZX A;  4DV2 H;  1AN7 A;  5IT9 W;  4AQY H;  3L7Z C;  4B8T A;  2Z0S A;  1N36 H;  4AIM A;  4JI2 H;  4X65 H;  2ZM6 H;  4EC5 A;  1N32 H;  1ZZJ A;  4B3M H;  1V9N A;  2CWF A;  3U1K A;  4X62 H;  4NZR M;  4GKJ H;  2D9I A;  2FFM A;  4NZT M;  5IWA H;  1PQX A;  3EZJ A;  2VKC A;  1KHM A;  1WVN A;  4LFA H;  3VKE A;  1X4M A;  4NXM H;  4NXN H;  3NCV A;  4DV6 H; 
#chains in the Genus database with same CATH homology
 4FJU A;  4FJS A;  1Z2I A;  1XRH A;  2CWH A;  2G8Y A;  4H8A A;  3I0P A;  1S20 A;  1NXU A;  1WTJ A;  2X06 A;  1X0A A;  1VBI A;  3UOE A;  1V9N A;  2CWF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4FJSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN