4FJU | Genus

Total Genus 109

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	109
sequence length	338
structure length	338
Chain Sequence	MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Escherichia coli
publication title	Structural and functional insights into (s)-ureidoglycolate dehydrogenase, a metabolic branch point enzyme in nitrogen utilization. pubmed doi rcsb
molecule keywords	Ureidoglycolate dehydrogenase
total genus	109
structure length	338
sequence length	338
chains with identical sequence	B
ec nomenclature	ec 1.1.1.154: Ureidoglycolate dehydrogenase.
pdb deposition date	2012-06-12

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1530.10	Mainly Alpha	Orthogonal Bundle	Hypothetical Oxidoreductase Yiak; Chain: A, domain 1	Hypothetical Oxidoreductase Yiak; Chain: A, domain 1	4fjuA01
3.30.1370.60	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Hypothetical oxidoreductase yiak; domain 2	4fjuA02

1NXUA 1WTJA 1Z2IA 4FJSA 1XRHA 3UOEA 3I0PA 2X06A 1VBIA 1S20A 2CWHA 1V9NA 2G8YA 2CWFA 4FJUA 4H8AA 1X0AA
chains in the Genus database with same CATH superfamily

2UXCH 1WTJA 4OD6A 1WVNA 3T1HH 1ZZIA 4X65H 4DV2H 4AQYH 2HH3A 1S03G 5IWAH 3VKEA 2ZM6H 3OTOH 2NN6G 2M6QA 4DR3H 4DR4H 1ZTGA 1VBIA 1DTJA 4H8AA 4GKKH 3GR5A 2CWFA 1X9ZA 4JI1H 1X0AA 4OCHA 2JVZA 5A2QW 4QMFB 1N34H 4FJSA 4JI7H 4KHPH 2UUAH 2YQRA 3KDGA 4AM3A 4NXNH 2CPMA 4JI2H 4B8TA 4DV0H 3KDKA 2ANNA 2CTKA 2VQEH 4LFAH 4LF5H 1X4NA 1X4MA 4JI8H 5IT9W 1S20A 1HR0H 1VIHA 3J80W 4X62H 4JI4H 2CTEA 4B3TH 4X64H 1ODHA 3AEVB 1IBMH 2BA0A 2ZQEA 5LL6b 1WE8A 2A1SA 2CWHA 4NBQA 2UXDH 2E3UA 2CTMA 4DV4H 4OX9H 4DR6H 2QNDA 1N36H 1PQXA 3U1KA 1HNZH 4WALA 4YY3H 2LTLA 2VKCA 4DV1H 5BR8H 3QD7X 5K36G 4BA1I 3GKUA 4JYAH 3FAUA 4PDBA 1UG8A 1IBKH 1KHMA 5DT9A 2PQUA 4DUZH 5JEAG 2BL5A 4LF6H 2UXBH 4JI5H 2D9IA 4JVYA 1N32H 1XRHA 2UU9H 2FMRA 4LF4H 2DGRA 2X06A 2UUBH 2HH2A 2PY9A 1ZZKA 1HNWH 4B3MH 1Z2IA 2CPQA 1J5KA 4NXMH 3V69A 2CTFA 1XMQH 1AN7A 4DUYH 3SB1A 1HNXH 4B3RH 1VIGA 2CTJA 2LRRA 2OPUA 4JI6H 3GABA 4OO1G 4DV7H 2JZXA 2O4CA 2E5LH 3UOEA 1XMOH 2ANRA 3RF2A 4NZRM 2G8YA 4NZTM 4AIMA 1FJGH 3L7ZC 1I6UA 4DV3H 2UUCH 5LMNH 4LF9H 4BA2I 1I94H 4WANA 1V8CA 4DV5H 3OSSD 1N33H 2M8WA 3I0PA 4DR5H 2PT7G 4K0KH 4JV5H 4X66H 4JVHA 2AXYA 2LTMA 1MSZA 2JE6I 4B3SH 1XNRH 2F4VH 4IFDG 4LIJA 4B8CD 1DT4A 1J5EH 4G08A 2MJHA 1V9NA 4GKJH 3JAMW 1XNQH 4LFBH 3NCVA 3J81W 4LF8H 4DR7H 2Y3MA 5C0XG 1ZZJA 2FFMA 3J7AK 4FJUA 2OPVA 4DV6H 1F0XA 2K1HA 1K1GA 5LMUH 1IBLH 3T1YH 4LFCH 1WHRA 1EC6A 2CTLA 2VQFH 1J4WA 2HHHH 4E9JA 4LF7H 4DR1H 1SEIA 2LF0A 1TUAA 3OETA 3EZJA 4YHHH 1FKAH 1NXUA 2P2RA 2FPHX 5FLXW 2Z0SA 4JI0H 4JI3H 2JEAI 4EC5A 2JA9A 4DR2H 2JEBI
chains in the Genus database with same CATH topology

1NXUA 1WTJA 1Z2IA 4FJSA 1XRHA 3UOEA 3I0PA 2X06A 1VBIA 1S20A 2CWHA 1V9NA 2G8YA 2CWFA 4FJUA 4H8AA 1X0AA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1NXU A;  1WTJ A;  1Z2I A;  4FJS A;  1XRH A;  3UOE A;  3I0P A;  2X06 A;  1VBI A;  1S20 A;  2CWH A;  1V9N A;  2G8Y A;  2CWF A;  4FJU A;  4H8A A;  1X0A A; 
#chains in the Genus database with same CATH topology
 2UXC H;  1WTJ A;  4OD6 A;  1WVN A;  3T1H H;  1ZZI A;  4X65 H;  4DV2 H;  4AQY H;  2HH3 A;  1S03 G;  5IWA H;  3VKE A;  2ZM6 H;  3OTO H;  2NN6 G;  2M6Q A;  4DR3 H;  4DR4 H;  1ZTG A;  1VBI A;  1DTJ A;  4H8A A;  4GKK H;  3GR5 A;  2CWF A;  1X9Z A;  4JI1 H;  1X0A A;  4OCH A;  2JVZ A;  5A2Q W;  4QMF B;  1N34 H;  4FJS A;  4JI7 H;  4KHP H;  2UUA H;  2YQR A;  3KDG A;  4AM3 A;  4NXN H;  2CPM A;  4JI2 H;  4B8T A;  4DV0 H;  3KDK A;  2ANN A;  2CTK A;  2VQE H;  4LFA H;  4LF5 H;  1X4N A;  1X4M A;  4JI8 H;  5IT9 W;  1S20 A;  1HR0 H;  1VIH A;  3J80 W;  4X62 H;  4JI4 H;  2CTE A;  4B3T H;  4X64 H;  1ODH A;  3AEV B;  1IBM H;  2BA0 A;  2ZQE A;  5LL6 b;  1WE8 A;  2A1S A;  2CWH A;  4NBQ A;  2UXD H;  2E3U A;  2CTM A;  4DV4 H;  4OX9 H;  4DR6 H;  2QND A;  1N36 H;  1PQX A;  3U1K A;  1HNZ H;  4WAL A;  4YY3 H;  2LTL A;  2VKC A;  4DV1 H;  5BR8 H;  3QD7 X;  5K36 G;  4BA1 I;  3GKU A;  4JYA H;  3FAU A;  4PDB A;  1UG8 A;  1IBK H;  1KHM A;  5DT9 A;  2PQU A;  4DUZ H;  5JEA G;  2BL5 A;  4LF6 H;  2UXB H;  4JI5 H;  2D9I A;  4JVY A;  1N32 H;  1XRH A;  2UU9 H;  2FMR A;  4LF4 H;  2DGR A;  2X06 A;  2UUB H;  2HH2 A;  2PY9 A;  1ZZK A;  1HNW H;  4B3M H;  1Z2I A;  2CPQ A;  1J5K A;  4NXM H;  3V69 A;  2CTF A;  1XMQ H;  1AN7 A;  4DUY H;  3SB1 A;  1HNX H;  4B3R H;  1VIG A;  2CTJ A;  2LRR A;  2OPU A;  4JI6 H;  3GAB A;  4OO1 G;  4DV7 H;  2JZX A;  2O4C A;  2E5L H;  3UOE A;  1XMO H;  2ANR A;  3RF2 A;  4NZR M;  2G8Y A;  4NZT M;  4AIM A;  1FJG H;  3L7Z C;  1I6U A;  4DV3 H;  2UUC H;  5LMN H;  4LF9 H;  4BA2 I;  1I94 H;  4WAN A;  1V8C A;  4DV5 H;  3OSS D;  1N33 H;  2M8W A;  3I0P A;  4DR5 H;  2PT7 G;  4K0K H;  4JV5 H;  4X66 H;  4JVH A;  2AXY A;  2LTM A;  1MSZ A;  2JE6 I;  4B3S H;  1XNR H;  2F4V H;  4IFD G;  4LIJ A;  4B8C D;  1DT4 A;  1J5E H;  4G08 A;  2MJH A;  1V9N A;  4GKJ H;  3JAM W;  1XNQ H;  4LFB H;  3NCV A;  3J81 W;  4LF8 H;  4DR7 H;  2Y3M A;  5C0X G;  1ZZJ A;  2FFM A;  3J7A K;  4FJU A;  2OPV A;  4DV6 H;  1F0X A;  2K1H A;  1K1G A;  5LMU H;  1IBL H;  3T1Y H;  4LFC H;  1WHR A;  1EC6 A;  2CTL A;  2VQF H;  1J4W A;  2HHH H;  4E9J A;  4LF7 H;  4DR1 H;  1SEI A;  2LF0 A;  1TUA A;  3OET A;  3EZJ A;  4YHH H;  1FKA H;  1NXU A;  2P2R A;  2FPH X;  5FLX W;  2Z0S A;  4JI0 H;  4JI3 H;  2JEA I;  4EC5 A;  2JA9 A;  4DR2 H;  2JEB I; 
#chains in the Genus database with same CATH homology
 1NXU A;  1WTJ A;  1Z2I A;  4FJS A;  1XRH A;  3UOE A;  3I0P A;  2X06 A;  1VBI A;  1S20 A;  2CWH A;  1V9N A;  2G8Y A;  2CWF A;  4FJU A;  4H8A A;  1X0A A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4FJUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN