4JVYA

Structure of the star (signal transduction and activation of rna) domain of gld-1 bound to rna
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
191
structure length
191
Chain Sequence
SHEATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites.
pubmed doi rcsb
molecule tags Rna binding protein
source organism Caenorhabditis elegans
molecule keywords Female germline-specific tumor suppressor gld-1
total genus 63
structure length 191
sequence length 191
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4jvyA00
2CTMA 3L7ZC 2P2RA 2OPVA 1K1GA 2CTJA 2PQUA 2E3UA 2Z0SA 2MJHA 2FMRA 1DT4A 2JEBI 1J4WA 4AM3A 2YQRA 4JVYA 2JVZA 3VKEA 4BA2I 2PY9A 2NN6G 4NBQA 3AEVB 2ANRA 4JVHA 2OPUA 2JE6I 1EC6A 4WANA 1ZTGA 1WE8A 1ZZJA 1J5KA 4IFDG 5K36G 4WALA 4QMFB 1X4MA 4LIJA 1DTJA 3U1KA 2CTKA 2JEAI 4AIMA 2CPQA 1VIGA 1ZZKA 2BL5A 2JA9A 3V69A 1X4NA 1WVNA 1ZZIA 5C0XG 2HH3A 2CTLA 2AXYA 5JEAG 2ANNA 4OO1G 1KHMA 2BA0A 2CTFA 4BA1I 2HH2A 1VIHA 2QNDA 1TUAA 2JZXA 2DGRA 4B8TA 2CTEA
chains in the Genus database with same CATH superfamily
3GR5A 2FMRA 2JEBI 4JVYA 2UXDH 2YQRA 1XRHA 1ODHA 5IT9W 3VKEA 4JI1H 2NN6G 2HHHH 2ANRA 4JVHA 4GKJH 1EC6A 4LF7H 1ZTGA 1XMOH 1N34H 4DR7H 4OD6A 4QMFB 2O4CA 5LL6b 1DTJA 2D9IA 2FFMA 1IBKH 2FPHX 2JEAI 2CWHA 2CPQA 1VIGA 4FJSA 4AIMA 4DV4H 4JYAH 4B3RH 1X9ZA 2CWFA 5FLXW 2CTLA 1I94H 4DV6H 4JV5H 2VKCA 3QD7X 2F4VH 4OO1G 1VIHA 4LF5H 1TUAA 1HR0H 4B8TA 4H8AA 3NCVA 2CTEA 1X4MA 4DV3H 5LMNH 1F0XA 4OX9H 1PQXA 2X06A 4DV1H 4K0KH 4NZRM 4DV5H 2Z0SA 4X65H 1DT4A 4DR6H 4EC5A 1HNXH 1IBMH 5IWAH 4BA2I 4LFCH 4LFBH 2VQEH 4NBQA 3OTOH 4LF9H 2OPUA 2UXBH 4DUYH 4AQYH 3T1HH 2M8WA 2LF0A 4IFDG 4KHPH 5K36G 2LTMA 2LTLA 4FJUA 4LIJA 3U1KA 3J7AK 4DUZH 3V69A 4LF6H 4OCHA 3J80W 4JI8H 1FKAH 1WVNA 2PT7G 1WTJA 4JI7H 3OSSD 5LMUH 4B3TH 2E5LH 2AXYA 2ZQEA 2ZM6H 4NXNH 2ANNA 1N32H 1N33H 4LFAH 4JI2H 2HH2A 4B8CD 3GABA 3GKUA 2JZXA 4X64H 4X66H 1J5KA 1SEIA 3L7ZC 4LF4H 4YHHH 1K1GA 1HNWH 4NZTM 2E3UA 4JI3H 4X62H 1S03G 1J4WA 4E9JA 2UUAH 3KDKA 1AN7A 1IBLH 3EZJA 4JI6H 1J5EH 4DV0H 1ZZJA 1XMQH 1XNQH 1UG8A 4WALA 4DR5H 5DT9A 2CTKA 4DR4H 2G8YA 3UOEA 3FAUA 4PDBA 2BL5A 3SB1A 1X4NA 3RF2A 4DR3H 2UU9H 4JI4H 1ZZIA 1KHMA 4BA1I 2CTFA 2QNDA 1S20A 3JAMW 1V8CA 3KDGA 2CPMA 1N36H 3T1YH 2CTMA 2P2RA 1WHRA 2OPVA 4B3MH 2CTJA 2VQFH 2PQUA 5A2QW 1X0AA 2MJHA 5BR8H 4AM3A 4DR1H 1I6UA 4DR2H 2A1SA 2JVZA 1NXUA 4YY3H 4GKKH 3I0PA 2PY9A 1XNRH 3AEVB 1FJGH 1Z2IA 2JE6I 4WANA 1WE8A 4LF8H 1MSZA 4B3SH 2UUCH 1VBIA 2K1HA 4DV2H 4JI5H 4JI0H 1V9NA 1HNZH 2JA9A 2M6QA 1ZZKA 4NXMH 4DV7H 5C0XG 2HH3A 5JEAG 2Y3MA 2BA0A 2UXCH 4G08A 3OETA 3J81W 2DGRA 2LRRA 2UUBH
chains in the Genus database with same CATH topology
2CTMA 3L7ZC 2P2RA 2OPVA 1K1GA 2CTJA 2PQUA 2E3UA 2Z0SA 2MJHA 2FMRA 1DT4A 2JEBI 1J4WA 4AM3A 2YQRA 4JVYA 2JVZA 3VKEA 4BA2I 2PY9A 2NN6G 4NBQA 3AEVB 2ANRA 4JVHA 2OPUA 2JE6I 1EC6A 4WANA 1ZTGA 1WE8A 1ZZJA 1J5KA 4IFDG 5K36G 4WALA 4QMFB 1X4MA 4LIJA 1DTJA 3U1KA 2CTKA 2JEAI 4AIMA 2CPQA 1VIGA 1ZZKA 2BL5A 2JA9A 3V69A 1X4NA 1WVNA 1ZZIA 5C0XG 2HH3A 2CTLA 2AXYA 5JEAG 2ANNA 4OO1G 1KHMA 2BA0A 2CTFA 4BA1I 2HH2A 1VIHA 2QNDA 1TUAA 2JZXA 2DGRA 4B8TA 2CTEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CTM A;  3L7Z C;  2P2R A;  2OPV A;  1K1G A;  2CTJ A;  2PQU A;  2E3U A;  2Z0S A;  2MJH A;  2FMR A;  1DT4 A;  2JEB I;  1J4W A;  4AM3 A;  2YQR A;  4JVY A;  2JVZ A;  3VKE A;  4BA2 I;  2PY9 A;  2NN6 G;  4NBQ A;  3AEV B;  2ANR A;  4JVH A;  2OPU A;  2JE6 I;  1EC6 A;  4WAN A;  1ZTG A;  1WE8 A;  1ZZJ A;  1J5K A;  4IFD G;  5K36 G;  4WAL A;  4QMF B;  1X4M A;  4LIJ A;  1DTJ A;  3U1K A;  2CTK A;  2JEA I;  4AIM A;  2CPQ A;  1VIG A;  1ZZK A;  2BL5 A;  2JA9 A;  3V69 A;  1X4N A;  1WVN A;  1ZZI A;  5C0X G;  2HH3 A;  2CTL A;  2AXY A;  5JEA G;  2ANN A;  4OO1 G;  1KHM A;  2BA0 A;  2CTF A;  4BA1 I;  2HH2 A;  1VIH A;  2QND A;  1TUA A;  2JZX A;  2DGR A;  4B8T A;  2CTE A; 
#chains in the Genus database with same CATH topology
 3GR5 A;  2FMR A;  2JEB I;  4JVY A;  2UXD H;  2YQR A;  1XRH A;  1ODH A;  5IT9 W;  3VKE A;  4JI1 H;  2NN6 G;  2HHH H;  2ANR A;  4JVH A;  4GKJ H;  1EC6 A;  4LF7 H;  1ZTG A;  1XMO H;  1N34 H;  4DR7 H;  4OD6 A;  4QMF B;  2O4C A;  5LL6 b;  1DTJ A;  2D9I A;  2FFM A;  1IBK H;  2FPH X;  2JEA I;  2CWH A;  2CPQ A;  1VIG A;  4FJS A;  4AIM A;  4DV4 H;  4JYA H;  4B3R H;  1X9Z A;  2CWF A;  5FLX W;  2CTL A;  1I94 H;  4DV6 H;  4JV5 H;  2VKC A;  3QD7 X;  2F4V H;  4OO1 G;  1VIH A;  4LF5 H;  1TUA A;  1HR0 H;  4B8T A;  4H8A A;  3NCV A;  2CTE A;  1X4M A;  4DV3 H;  5LMN H;  1F0X A;  4OX9 H;  1PQX A;  2X06 A;  4DV1 H;  4K0K H;  4NZR M;  4DV5 H;  2Z0S A;  4X65 H;  1DT4 A;  4DR6 H;  4EC5 A;  1HNX H;  1IBM H;  5IWA H;  4BA2 I;  4LFC H;  4LFB H;  2VQE H;  4NBQ A;  3OTO H;  4LF9 H;  2OPU A;  2UXB H;  4DUY H;  4AQY H;  3T1H H;  2M8W A;  2LF0 A;  4IFD G;  4KHP H;  5K36 G;  2LTM A;  2LTL A;  4FJU A;  4LIJ A;  3U1K A;  3J7A K;  4DUZ H;  3V69 A;  4LF6 H;  4OCH A;  3J80 W;  4JI8 H;  1FKA H;  1WVN A;  2PT7 G;  1WTJ A;  4JI7 H;  3OSS D;  5LMU H;  4B3T H;  2E5L H;  2AXY A;  2ZQE A;  2ZM6 H;  4NXN H;  2ANN A;  1N32 H;  1N33 H;  4LFA H;  4JI2 H;  2HH2 A;  4B8C D;  3GAB A;  3GKU A;  2JZX A;  4X64 H;  4X66 H;  1J5K A;  1SEI A;  3L7Z C;  4LF4 H;  4YHH H;  1K1G A;  1HNW H;  4NZT M;  2E3U A;  4JI3 H;  4X62 H;  1S03 G;  1J4W A;  4E9J A;  2UUA H;  3KDK A;  1AN7 A;  1IBL H;  3EZJ A;  4JI6 H;  1J5E H;  4DV0 H;  1ZZJ A;  1XMQ H;  1XNQ H;  1UG8 A;  4WAL A;  4DR5 H;  5DT9 A;  2CTK A;  4DR4 H;  2G8Y A;  3UOE A;  3FAU A;  4PDB A;  2BL5 A;  3SB1 A;  1X4N A;  3RF2 A;  4DR3 H;  2UU9 H;  4JI4 H;  1ZZI A;  1KHM A;  4BA1 I;  2CTF A;  2QND A;  1S20 A;  3JAM W;  1V8C A;  3KDG A;  2CPM A;  1N36 H;  3T1Y H;  2CTM A;  2P2R A;  1WHR A;  2OPV A;  4B3M H;  2CTJ A;  2VQF H;  2PQU A;  5A2Q W;  1X0A A;  2MJH A;  5BR8 H;  4AM3 A;  4DR1 H;  1I6U A;  4DR2 H;  2A1S A;  2JVZ A;  1NXU A;  4YY3 H;  4GKK H;  3I0P A;  2PY9 A;  1XNR H;  3AEV B;  1FJG H;  1Z2I A;  2JE6 I;  4WAN A;  1WE8 A;  4LF8 H;  1MSZ A;  4B3S H;  2UUC H;  1VBI A;  2K1H A;  4DV2 H;  4JI5 H;  4JI0 H;  1V9N A;  1HNZ H;  2JA9 A;  2M6Q A;  1ZZK A;  4NXM H;  4DV7 H;  5C0X G;  2HH3 A;  5JEA G;  2Y3M A;  2BA0 A;  2UXC H;  4G08 A;  3OET A;  3J81 W;  2DGR A;  2LRR A;  2UUB H; 
#chains in the Genus database with same CATH homology
 2CTM A;  3L7Z C;  2P2R A;  2OPV A;  1K1G A;  2CTJ A;  2PQU A;  2E3U A;  2Z0S A;  2MJH A;  2FMR A;  1DT4 A;  2JEB I;  1J4W A;  4AM3 A;  2YQR A;  4JVY A;  2JVZ A;  3VKE A;  4BA2 I;  2PY9 A;  2NN6 G;  4NBQ A;  3AEV B;  2ANR A;  4JVH A;  2OPU A;  2JE6 I;  1EC6 A;  4WAN A;  1ZTG A;  1WE8 A;  1ZZJ A;  1J5K A;  4IFD G;  5K36 G;  4WAL A;  4QMF B;  1X4M A;  4LIJ A;  1DTJ A;  3U1K A;  2CTK A;  2JEA I;  4AIM A;  2CPQ A;  1VIG A;  1ZZK A;  2BL5 A;  2JA9 A;  3V69 A;  1X4N A;  1WVN A;  1ZZI A;  5C0X G;  2HH3 A;  2CTL A;  2AXY A;  5JEA G;  2ANN A;  4OO1 G;  1KHM A;  2BA0 A;  2CTF A;  4BA1 I;  2HH2 A;  1VIH A;  2QND A;  1TUA A;  2JZX A;  2DGR A;  4B8T A;  2CTE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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