4JVYA

Structure of the star (signal transduction and activation of rna) domain of gld-1 bound to rna
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
191
structure length
191
Chain Sequence
SHEATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFPRVELPEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-function studies of STAR family Quaking proteins bound to their in vivo RNA target sites.
pubmed doi rcsb
molecule tags Rna binding protein
source organism Caenorhabditis elegans
molecule keywords Female germline-specific tumor suppressor gld-1
total genus 63
structure length 191
sequence length 191
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4jvyA00
2MJHA 2JEBI 2CTLA 4AIMA 1TUAA 2E3UA 2OPUA 5C0XG 4WALA 1K1GA 2ANNA 2FMRA 2YQRA 4JVYA 1ZZJA 1WVNA 2CTFA 2QNDA 3VKEA 2P2RA 1J4WA 2PQUA 1ZTGA 4AM3A 1KHMA 2JEAI 2JVZA 2PY9A 2DGRA 1EC6A 2CTKA 1DT4A 2Z0SA 3V69A 4QMFB 1ZZIA 5JEAG 2JA9A 4BA2I 4B8TA 2JZXA 2CTEA 1DTJA 2HH3A 2ANRA 2CTMA 2AXYA 4OO1G 2HH2A 2BL5A 4WANA 4IFDG 1VIHA 1X4NA 1VIGA 1ZZKA 4NBQA 2BA0A 1WE8A 2OPVA 4JVHA 5K36G 3L7ZC 2CTJA 3U1KA 2NN6G 4BA1I 3AEVB 1X4MA 2CPQA 1J5KA 2JE6I 4LIJA
chains in the Genus database with same CATH superfamily
4DV3H 2MJHA 2CPMA 4B3SH 1TUAA 2E3UA 4DR1H 4DV1H 5LL6b 2QNDA 3VKEA 1XRHA 4FJUA 2P2RA 3NCVA 1AN7A 5DT9A 4X64H 4X65H 2VQFH 2PY9A 1HNWH 1XMOH 1DT4A 1V8CA 3OETA 1ZZIA 2M8WA 4JI3H 3EZJA 1VBIA 4EC5A 1XNQH 1MSZA 4GKKH 2LTMA 4YY3H 1UG8A 2BL5A 4DV6H 2ZQEA 4B3MH 5IT9W 2CWHA 2M6QA 1NXUA 1X0AA 1FKAH 2UUBH 1V9NA 2BA0A 1HNZH 4NXMH 3L7ZC 3U1KA 3AEVB 2NN6G 4BA1I 4B3RH 5K36G 2Y3MA 2HHHH 1FJGH 4DUZH 4AIMA 4B3TH 4JI7H 4FJSA 2ANNA 2FMRA 4AQYH 4NZRM 4LFBH 4PDBA 1WVNA 2CTFA 3JAMW 4NXNH 1KHMA 1SEIA 3GABA 4JI2H 1ZTGA 2VQEH 2JVZA 2UUCH 2DGRA 1WTJA 2CTKA 2FPHX 4DR6H 4DR4H 1N36H 1PQXA 5A2QW 1S20A 4B8TA 2JZXA 4DR3H 2ZM6H 1DTJA 4LF5H 4LF7H 4DV4H 2HH2A 3UOEA 2F4VH 4WANA 1HR0H 2UXCH 4OD6A 1VIGA 4NBQA 5BR8H 3GKUA 4OX9H 4DV5H 1XNRH 1WE8A 4JVHA 3J80W 2FFMA 2CTJA 2A1SA 2CPQA 2G8YA 1IBMH 3FAUA 2JE6I 4LIJA 1S03G 1N34H 2JEBI 3J81W 1J5EH 2CTLA 4JI6H 3J7AK 4KHPH 1K1GA 2X06A 4K0KH 1ZZJA 5LMUH 2UU9H 2PQUA 4DUYH 2JEAI 4DV7H 4X62H 3SB1A 1IBLH 4B8CD 1I6UA 4JI5H 4QMFB 4E9JA 2PT7G 5JEAG 2JA9A 4DV0H 4OO1G 2CTMA 2AXYA 4JV5H 3QD7X 4OCHA 4IFDG 1VIHA 5LMNH 2D9IA 3I0PA 4LFAH 1I94H 4JYAH 4GKJH 2UXDH 4G08A 2LTLA 3KDKA 2VKCA 1ODHA 2OPVA 4X66H 4NZTM 2UXBH 4LF4H 4LFCH 4JI0H 4JI4H 2LRRA 3T1YH 2CWFA 1IBKH 5IWAH 1Z2IA 2OPUA 5C0XG 4WALA 1N32H 4DR2H 4JVYA 2YQRA 4LF6H 4H8AA 4AM3A 1J4WA 2UUAH 3T1HH 4JI1H 1EC6A 3OSSD 3OTOH 2Z0SA 3V69A 4DR5H 4YHHH 4BA2I 4DR7H 1N33H 1F0XA 4DV2H 1XMQH 2CTEA 2HH3A 4LF9H 2ANRA 2E5LH 4LF8H 1HNXH 3RF2A 1X4NA 2K1HA 3KDGA 1ZZKA 1WHRA 4JI8H 1X9ZA 5FLXW 2O4CA 1X4MA 1J5KA 2LF0A 3GR5A
chains in the Genus database with same CATH topology
2MJHA 2JEBI 2CTLA 4AIMA 1TUAA 2E3UA 2OPUA 5C0XG 4WALA 1K1GA 2ANNA 2FMRA 2YQRA 4JVYA 1ZZJA 1WVNA 2CTFA 2QNDA 3VKEA 2P2RA 1J4WA 2PQUA 1ZTGA 4AM3A 1KHMA 2JEAI 2JVZA 2PY9A 2DGRA 1EC6A 2CTKA 1DT4A 2Z0SA 3V69A 4QMFB 1ZZIA 5JEAG 2JA9A 4BA2I 4B8TA 2JZXA 2CTEA 1DTJA 2HH3A 2ANRA 2CTMA 2AXYA 4OO1G 2HH2A 2BL5A 4WANA 4IFDG 1VIHA 1X4NA 1VIGA 1ZZKA 4NBQA 2BA0A 1WE8A 2OPVA 4JVHA 5K36G 3L7ZC 2CTJA 3U1KA 2NN6G 4BA1I 3AEVB 1X4MA 2CPQA 1J5KA 2JE6I 4LIJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MJH A;  2JEB I;  2CTL A;  4AIM A;  1TUA A;  2E3U A;  2OPU A;  5C0X G;  4WAL A;  1K1G A;  2ANN A;  2FMR A;  2YQR A;  4JVY A;  1ZZJ A;  1WVN A;  2CTF A;  2QND A;  3VKE A;  2P2R A;  1J4W A;  2PQU A;  1ZTG A;  4AM3 A;  1KHM A;  2JEA I;  2JVZ A;  2PY9 A;  2DGR A;  1EC6 A;  2CTK A;  1DT4 A;  2Z0S A;  3V69 A;  4QMF B;  1ZZI A;  5JEA G;  2JA9 A;  4BA2 I;  4B8T A;  2JZX A;  2CTE A;  1DTJ A;  2HH3 A;  2ANR A;  2CTM A;  2AXY A;  4OO1 G;  2HH2 A;  2BL5 A;  4WAN A;  4IFD G;  1VIH A;  1X4N A;  1VIG A;  1ZZK A;  4NBQ A;  2BA0 A;  1WE8 A;  2OPV A;  4JVH A;  5K36 G;  3L7Z C;  2CTJ A;  3U1K A;  2NN6 G;  4BA1 I;  3AEV B;  1X4M A;  2CPQ A;  1J5K A;  2JE6 I;  4LIJ A; 
#chains in the Genus database with same CATH topology
 4DV3 H;  2MJH A;  2CPM A;  4B3S H;  1TUA A;  2E3U A;  4DR1 H;  4DV1 H;  5LL6 b;  2QND A;  3VKE A;  1XRH A;  4FJU A;  2P2R A;  3NCV A;  1AN7 A;  5DT9 A;  4X64 H;  4X65 H;  2VQF H;  2PY9 A;  1HNW H;  1XMO H;  1DT4 A;  1V8C A;  3OET A;  1ZZI A;  2M8W A;  4JI3 H;  3EZJ A;  1VBI A;  4EC5 A;  1XNQ H;  1MSZ A;  4GKK H;  2LTM A;  4YY3 H;  1UG8 A;  2BL5 A;  4DV6 H;  2ZQE A;  4B3M H;  5IT9 W;  2CWH A;  2M6Q A;  1NXU A;  1X0A A;  1FKA H;  2UUB H;  1V9N A;  2BA0 A;  1HNZ H;  4NXM H;  3L7Z C;  3U1K A;  3AEV B;  2NN6 G;  4BA1 I;  4B3R H;  5K36 G;  2Y3M A;  2HHH H;  1FJG H;  4DUZ H;  4AIM A;  4B3T H;  4JI7 H;  4FJS A;  2ANN A;  2FMR A;  4AQY H;  4NZR M;  4LFB H;  4PDB A;  1WVN A;  2CTF A;  3JAM W;  4NXN H;  1KHM A;  1SEI A;  3GAB A;  4JI2 H;  1ZTG A;  2VQE H;  2JVZ A;  2UUC H;  2DGR A;  1WTJ A;  2CTK A;  2FPH X;  4DR6 H;  4DR4 H;  1N36 H;  1PQX A;  5A2Q W;  1S20 A;  4B8T A;  2JZX A;  4DR3 H;  2ZM6 H;  1DTJ A;  4LF5 H;  4LF7 H;  4DV4 H;  2HH2 A;  3UOE A;  2F4V H;  4WAN A;  1HR0 H;  2UXC H;  4OD6 A;  1VIG A;  4NBQ A;  5BR8 H;  3GKU A;  4OX9 H;  4DV5 H;  1XNR H;  1WE8 A;  4JVH A;  3J80 W;  2FFM A;  2CTJ A;  2A1S A;  2CPQ A;  2G8Y A;  1IBM H;  3FAU A;  2JE6 I;  4LIJ A;  1S03 G;  1N34 H;  2JEB I;  3J81 W;  1J5E H;  2CTL A;  4JI6 H;  3J7A K;  4KHP H;  1K1G A;  2X06 A;  4K0K H;  1ZZJ A;  5LMU H;  2UU9 H;  2PQU A;  4DUY H;  2JEA I;  4DV7 H;  4X62 H;  3SB1 A;  1IBL H;  4B8C D;  1I6U A;  4JI5 H;  4QMF B;  4E9J A;  2PT7 G;  5JEA G;  2JA9 A;  4DV0 H;  4OO1 G;  2CTM A;  2AXY A;  4JV5 H;  3QD7 X;  4OCH A;  4IFD G;  1VIH A;  5LMN H;  2D9I A;  3I0P A;  4LFA H;  1I94 H;  4JYA H;  4GKJ H;  2UXD H;  4G08 A;  2LTL A;  3KDK A;  2VKC A;  1ODH A;  2OPV A;  4X66 H;  4NZT M;  2UXB H;  4LF4 H;  4LFC H;  4JI0 H;  4JI4 H;  2LRR A;  3T1Y H;  2CWF A;  1IBK H;  5IWA H;  1Z2I A;  2OPU A;  5C0X G;  4WAL A;  1N32 H;  4DR2 H;  4JVY A;  2YQR A;  4LF6 H;  4H8A A;  4AM3 A;  1J4W A;  2UUA H;  3T1H H;  4JI1 H;  1EC6 A;  3OSS D;  3OTO H;  2Z0S A;  3V69 A;  4DR5 H;  4YHH H;  4BA2 I;  4DR7 H;  1N33 H;  1F0X A;  4DV2 H;  1XMQ H;  2CTE A;  2HH3 A;  4LF9 H;  2ANR A;  2E5L H;  4LF8 H;  1HNX H;  3RF2 A;  1X4N A;  2K1H A;  3KDG A;  1ZZK A;  1WHR A;  4JI8 H;  1X9Z A;  5FLX W;  2O4C A;  1X4M A;  1J5K A;  2LF0 A;  3GR5 A; 
#chains in the Genus database with same CATH homology
 2MJH A;  2JEB I;  2CTL A;  4AIM A;  1TUA A;  2E3U A;  2OPU A;  5C0X G;  4WAL A;  1K1G A;  2ANN A;  2FMR A;  2YQR A;  4JVY A;  1ZZJ A;  1WVN A;  2CTF A;  2QND A;  3VKE A;  2P2R A;  1J4W A;  2PQU A;  1ZTG A;  4AM3 A;  1KHM A;  2JEA I;  2JVZ A;  2PY9 A;  2DGR A;  1EC6 A;  2CTK A;  1DT4 A;  2Z0S A;  3V69 A;  4QMF B;  1ZZI A;  5JEA G;  2JA9 A;  4BA2 I;  4B8T A;  2JZX A;  2CTE A;  1DTJ A;  2HH3 A;  2ANR A;  2CTM A;  2AXY A;  4OO1 G;  2HH2 A;  2BL5 A;  4WAN A;  4IFD G;  1VIH A;  1X4N A;  1VIG A;  1ZZK A;  4NBQ A;  2BA0 A;  1WE8 A;  2OPV A;  4JVH A;  5K36 G;  3L7Z C;  2CTJ A;  3U1K A;  2NN6 G;  4BA1 I;  3AEV B;  1X4M A;  2CPQ A;  1J5K A;  2JE6 I;  4LIJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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