4OD6A

Structure of smr domain of muts2 from deinococcus radiodurans, mn2+ soaked
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
82
structure length
82
Chain Sequence
RFDNELQLRGLSVEAAVEELRAAIAEARALKETPLRVVHGKGMGVLRRTLRDYLKTDKNVESFHDAEANQGGHGVTIVNVKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural and functional studies of MutS2 from Deinococcus radiodurans.
pubmed doi rcsb
molecule tags Hydrolase
source organism Deinococcus radiodurans
molecule keywords Endonuclease MutS2
total genus 29
structure length 82
sequence length 82
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 4od6A00
2ZQEA 3QD7X 2D9IA 4OD6A 4OCHA 2VKCA 3FAUA
chains in the Genus database with same CATH superfamily
4B3RH 2BA0A 4DV3H 2CPQA 1WTJA 1KHMA 4JI7H 2CWHA 1WVNA 2FFMA 5IT9W 4BA2I 4DV7H 3GKUA 4AM3A 3EZJA 2ANNA 5C0XG 4B8TA 1K1GA 1ZTGA 1I94H 1HNXH 1VIHA 4JI1H 1FKAH 4JVHA 1DT4A 1PQXA 2A1SA 1XNRH 1NXUA 4OCHA 4DV1H 4K0KH 2PQUA 2UU9H 4DV0H 2CTEA 2CTJA 2CTLA 3KDKA 2CTKA 4DV6H 4OO1G 1MSZA 4DR6H 3T1YH 2JA9A 2JEBI 3GABA 3UOEA 2M6QA 2FPHX 1HNZH 2HH2A 4PDBA 1ZZIA 3AEVB 1F0XA 4X66H 5A2QW 1I6UA 2DGRA 2UXCH 2CTMA 1WHRA 2JVZA 3I0PA 3T1HH 4JI6H 1VIGA 1X4MA 2HH3A 4FJSA 2P2RA 2UUCH 4JYAH 1N33H 5LL6b 2M8WA 1Z2IA 4FJUA 1EC6A 2ZQEA 4LFCH 4JV5H 4DR4H 4GKKH 5LMUH 4DV4H 5JEAG 4DR3H 2O4CA 2CPMA 4AQYH 2AXYA 4B3TH 4JI5H 3J81W 4YHHH 4DUZH 3GR5A 4X62H 4LF5H 1IBMH 4JI8H 2JZXA 2E5LH 4B3SH 2LF0A 4B3MH 2NN6G 3KDGA 3L7ZC 3RF2A 2JE6I 2D9IA 2ANRA 4QMFB 2UUBH 2X06A 4DR7H 4NBQA 2MJHA 1S03G 4NZRM 1ZZKA 2VQEH 5BR8H 4KHPH 4NXMH 3J80W 2JEAI 5LMNH 1VBIA 4X64H 4LFAH 1XNQH 4NZTM 2BL5A 2LRRA 4DR1H 1IBLH 4DR5H 1J5EH 2HHHH 4AIMA 1SEIA 4DV2H 1V8CA 4WANA 3V69A 1J4WA 3OSSD 4NXNH 2VQFH 1N36H 4JI0H 1FJGH 1X9ZA 2QNDA 4WALA 4OX9H 4LF6H 1AN7A 5IWAH 1XMQH 1ZZJA 2UUAH 1XMOH 1XRHA 2F4VH 2PT7G 1HR0H 4LF8H 5K36G 4DV5H 2UXBH 4LFBH 2K1HA 3U1KA 4JI3H 3J7AK 2UXDH 3NCVA 1WE8A 2CTFA 2OPUA 1ODHA 2G8YA 2FMRA 1X0AA 2E3UA 2Z0SA 4YY3H 4JI4H 4H8AA 2VKCA 2LTLA 4E9JA 4X65H 4LF9H 4JI2H 4LF7H 4EC5A 5FLXW 1X4NA 2YQRA 1DTJA 4JVYA 1N32H 1V9NA 4GKJH 3JAMW 1UG8A 1N34H 3FAUA 2LTMA 2Y3MA 3OETA 3OTOH 3VKEA 1TUAA 1HNWH 2OPVA 1J5KA 2PY9A 5DT9A 1S20A 4LIJA 3QD7X 4LF4H 4OD6A 4B8CD 1IBKH 2CWFA 2ZM6H 4DR2H 4IFDG 4G08A 4DUYH 3SB1A 4BA1I
chains in the Genus database with same CATH topology
4B3RH 4DV3H 4JI7H 5IT9W 4DV7H 3EZJA 1I94H 1HNXH 4JI1H 1FKAH 1XNRH 4OCHA 4DV1H 4K0KH 2UU9H 4DV0H 3KDKA 4DV6H 4DR6H 3T1YH 3GABA 2FPHX 1HNZH 4PDBA 1F0XA 4X66H 5A2QW 1I6UA 2UXCH 4JI6H 3T1HH 4JYAH 2UUCH 1N33H 5LL6b 2ZQEA 4LFCH 4JV5H 4DR4H 4GKKH 5LMUH 4DV4H 4DR3H 2O4CA 4AQYH 4B3TH 4JI5H 3J81W 4YHHH 4DUZH 3GR5A 4X62H 4LF5H 1IBMH 4JI8H 2E5LH 4B3SH 2LF0A 4B3MH 3KDGA 3RF2A 2D9IA 2UUBH 4DR7H 1S03G 4NZRM 2VQEH 4KHPH 5BR8H 4NXMH 3J80W 5LMNH 4X64H 4LFAH 1XNQH 4NZTM 1IBLH 4DR1H 4DR5H 1J5EH 2HHHH 1SEIA 4DV2H 4NXNH 3OSSD 2VQFH 1N36H 4JI0H 1FJGH 1X9ZA 4OX9H 4LF6H 1AN7A 5IWAH 1XMQH 2UUAH 1XMOH 2F4VH 2PT7G 1HR0H 4LF8H 4DV5H 2UXBH 4LFBH 4JI3H 3J7AK 2UXDH 3NCVA 1ODHA 4YY3H 4JI4H 2VKCA 4X65H 4E9JA 4LF9H 4JI2H 4LF7H 4EC5A 5FLXW 1N32H 4GKJH 3JAMW 1N34H 3FAUA 2Y3MA 3OETA 3OTOH 1HNWH 5DT9A 3QD7X 4LF4H 4OD6A 4B8CD 1IBKH 2ZM6H 4DR2H 4G08A 4DUYH 3SB1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZQE A;  3QD7 X;  2D9I A;  4OD6 A;  4OCH A;  2VKC A;  3FAU A; 
#chains in the Genus database with same CATH topology
 4B3R H;  2BA0 A;  4DV3 H;  2CPQ A;  1WTJ A;  1KHM A;  4JI7 H;  2CWH A;  1WVN A;  2FFM A;  5IT9 W;  4BA2 I;  4DV7 H;  3GKU A;  4AM3 A;  3EZJ A;  2ANN A;  5C0X G;  4B8T A;  1K1G A;  1ZTG A;  1I94 H;  1HNX H;  1VIH A;  4JI1 H;  1FKA H;  4JVH A;  1DT4 A;  1PQX A;  2A1S A;  1XNR H;  1NXU A;  4OCH A;  4DV1 H;  4K0K H;  2PQU A;  2UU9 H;  4DV0 H;  2CTE A;  2CTJ A;  2CTL A;  3KDK A;  2CTK A;  4DV6 H;  4OO1 G;  1MSZ A;  4DR6 H;  3T1Y H;  2JA9 A;  2JEB I;  3GAB A;  3UOE A;  2M6Q A;  2FPH X;  1HNZ H;  2HH2 A;  4PDB A;  1ZZI A;  3AEV B;  1F0X A;  4X66 H;  5A2Q W;  1I6U A;  2DGR A;  2UXC H;  2CTM A;  1WHR A;  2JVZ A;  3I0P A;  3T1H H;  4JI6 H;  1VIG A;  1X4M A;  2HH3 A;  4FJS A;  2P2R A;  2UUC H;  4JYA H;  1N33 H;  5LL6 b;  2M8W A;  1Z2I A;  4FJU A;  1EC6 A;  2ZQE A;  4LFC H;  4JV5 H;  4DR4 H;  4GKK H;  5LMU H;  4DV4 H;  5JEA G;  4DR3 H;  2O4C A;  2CPM A;  4AQY H;  2AXY A;  4B3T H;  4JI5 H;  3J81 W;  4YHH H;  4DUZ H;  3GR5 A;  4X62 H;  4LF5 H;  1IBM H;  4JI8 H;  2JZX A;  2E5L H;  4B3S H;  2LF0 A;  4B3M H;  2NN6 G;  3KDG A;  3L7Z C;  3RF2 A;  2JE6 I;  2D9I A;  2ANR A;  4QMF B;  2UUB H;  2X06 A;  4DR7 H;  4NBQ A;  2MJH A;  1S03 G;  4NZR M;  1ZZK A;  2VQE H;  5BR8 H;  4KHP H;  4NXM H;  3J80 W;  2JEA I;  5LMN H;  1VBI A;  4X64 H;  4LFA H;  1XNQ H;  4NZT M;  2BL5 A;  2LRR A;  4DR1 H;  1IBL H;  4DR5 H;  1J5E H;  2HHH H;  4AIM A;  1SEI A;  4DV2 H;  1V8C A;  4WAN A;  3V69 A;  1J4W A;  3OSS D;  4NXN H;  2VQF H;  1N36 H;  4JI0 H;  1FJG H;  1X9Z A;  2QND A;  4WAL A;  4OX9 H;  4LF6 H;  1AN7 A;  5IWA H;  1XMQ H;  1ZZJ A;  2UUA H;  1XMO H;  1XRH A;  2F4V H;  2PT7 G;  1HR0 H;  4LF8 H;  5K36 G;  4DV5 H;  2UXB H;  4LFB H;  2K1H A;  3U1K A;  4JI3 H;  3J7A K;  2UXD H;  3NCV A;  1WE8 A;  2CTF A;  2OPU A;  1ODH A;  2G8Y A;  2FMR A;  1X0A A;  2E3U A;  2Z0S A;  4YY3 H;  4JI4 H;  4H8A A;  2VKC A;  2LTL A;  4E9J A;  4X65 H;  4LF9 H;  4JI2 H;  4LF7 H;  4EC5 A;  5FLX W;  1X4N A;  2YQR A;  1DTJ A;  4JVY A;  1N32 H;  1V9N A;  4GKJ H;  3JAM W;  1UG8 A;  1N34 H;  3FAU A;  2LTM A;  2Y3M A;  3OET A;  3OTO H;  3VKE A;  1TUA A;  1HNW H;  2OPV A;  1J5K A;  2PY9 A;  5DT9 A;  1S20 A;  4LIJ A;  3QD7 X;  4LF4 H;  4OD6 A;  4B8C D;  1IBK H;  2CWF A;  2ZM6 H;  4DR2 H;  4IFD G;  4G08 A;  4DUY H;  3SB1 A;  4BA1 I; 
#chains in the Genus database with same CATH homology
 4B3R H;  4DV3 H;  4JI7 H;  5IT9 W;  4DV7 H;  3EZJ A;  1I94 H;  1HNX H;  4JI1 H;  1FKA H;  1XNR H;  4OCH A;  4DV1 H;  4K0K H;  2UU9 H;  4DV0 H;  3KDK A;  4DV6 H;  4DR6 H;  3T1Y H;  3GAB A;  2FPH X;  1HNZ H;  4PDB A;  1F0X A;  4X66 H;  5A2Q W;  1I6U A;  2UXC H;  4JI6 H;  3T1H H;  4JYA H;  2UUC H;  1N33 H;  5LL6 b;  2ZQE A;  4LFC H;  4JV5 H;  4DR4 H;  4GKK H;  5LMU H;  4DV4 H;  4DR3 H;  2O4C A;  4AQY H;  4B3T H;  4JI5 H;  3J81 W;  4YHH H;  4DUZ H;  3GR5 A;  4X62 H;  4LF5 H;  1IBM H;  4JI8 H;  2E5L H;  4B3S H;  2LF0 A;  4B3M H;  3KDG A;  3RF2 A;  2D9I A;  2UUB H;  4DR7 H;  1S03 G;  4NZR M;  2VQE H;  4KHP H;  5BR8 H;  4NXM H;  3J80 W;  5LMN H;  4X64 H;  4LFA H;  1XNQ H;  4NZT M;  1IBL H;  4DR1 H;  4DR5 H;  1J5E H;  2HHH H;  1SEI A;  4DV2 H;  4NXN H;  3OSS D;  2VQF H;  1N36 H;  4JI0 H;  1FJG H;  1X9Z A;  4OX9 H;  4LF6 H;  1AN7 A;  5IWA H;  1XMQ H;  2UUA H;  1XMO H;  2F4V H;  2PT7 G;  1HR0 H;  4LF8 H;  4DV5 H;  2UXB H;  4LFB H;  4JI3 H;  3J7A K;  2UXD H;  3NCV A;  1ODH A;  4YY3 H;  4JI4 H;  2VKC A;  4X65 H;  4E9J A;  4LF9 H;  4JI2 H;  4LF7 H;  4EC5 A;  5FLX W;  1N32 H;  4GKJ H;  3JAM W;  1N34 H;  3FAU A;  2Y3M A;  3OET A;  3OTO H;  1HNW H;  5DT9 A;  3QD7 X;  4LF4 H;  4OD6 A;  4B8C D;  1IBK H;  2ZM6 H;  4DR2 H;  4G08 A;  4DUY H;  3SB1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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