4OD6A

Structure of smr domain of muts2 from deinococcus radiodurans, mn2+ soaked
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
82
structure length
82
Chain Sequence
RFDNELQLRGLSVEAAVEELRAAIAEARALKETPLRVVHGKGMGVLRRTLRDYLKTDKNVESFHDAEANQGGHGVTIVNVKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural and functional studies of MutS2 from Deinococcus radiodurans.
pubmed doi rcsb
molecule tags Hydrolase
source organism Deinococcus radiodurans
molecule keywords Endonuclease MutS2
total genus 29
structure length 82
sequence length 82
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-01-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 4od6A00
4OCHA 3FAUA 3QD7X 2ZQEA 2D9IA 4OD6A 2VKCA
chains in the Genus database with same CATH superfamily
1F0XA 4DR3H 2CWHA 1IBLH 2Z0SA 4LFAH 4AQYH 4KHPH 4WALA 2K1HA 2YQRA 3KDKA 2M6QA 4X65H 3OETA 2UXDH 4JI1H 4LF4H 2CTFA 4DV5H 4LF8H 2LF0A 2UUBH 1K1GA 4K0KH 4DR2H 2UU9H 2M8WA 4DUZH 2Y3MA 3J80W 2DGRA 1N34H 4LF5H 1HNWH 2OPUA 4EC5A 3OTOH 4JV5H 3JAMW 4E9JA 3AEVB 2LTMA 1Z2IA 4DV0H 1N36H 1FJGH 1KHMA 4B3MH 1WE8A 1VIHA 3RF2A 5LMUH 1S20A 2FFMA 4JI4H 5DT9A 2CWFA 3GR5A 4X66H 4OO1G 4B3TH 3QD7X 3T1HH 1IBMH 2UXBH 1WHRA 1N33H 4DV3H 1TUAA 4JI8H 3NCVA 4DV7H 4PDBA 1J5KA 4DR4H 2CTEA 4LF7H 2ANNA 2AXYA 1XNQH 4GKJH 2E5LH 1I94H 5IT9W 2G8YA 2X06A 4BA2I 1HNXH 2F4VH 2JE6I 4BA1I 4LF6H 4JI0H 4NXNH 3V69A 4IFDG 2LRRA 5BR8H 4QMFB 1VIGA 1AN7A 4OX9H 1WTJA 2VKCA 1NXUA 4X64H 1XNRH 2NN6G 1X9ZA 2CTKA 1I6UA 2O4CA 5LMNH 3T1YH 4NBQA 4YHHH 3J81W 4LIJA 2PQUA 4DV6H 4X62H 4JI2H 3UOEA 4GKKH 1UG8A 4NZRM 2QNDA 5JEAG 5C0XG 4DV1H 4NXMH 2E3UA 2VQEH 2P2RA 1S03G 2BL5A 4AIMA 2ANRA 4OCHA 4DUYH 3FAUA 2UXCH 2HH2A 4DR1H 1HR0H 2VQFH 1VBIA 3KDGA 3OSSD 5A2QW 2PY9A 4JI7H 4DV2H 3L7ZC 1SEIA 4FJUA 1XRHA 3GKUA 1MSZA 1X4MA 1X4NA 4DR6H 4NZTM 1PQXA 4LFCH 2CTLA 3GABA 1WVNA 4AM3A 1J4WA 1ZTGA 2CPMA 2ZQEA 3U1KA 1DT4A 5IWAH 3EZJA 4B8TA 4B8CD 2HHHH 2CTMA 1ODHA 2CPQA 2JA9A 1ZZKA 4YY3H 1ZZJA 4JYAH 3SB1A 4DV4H 5K36G 1XMQH 4JVHA 2UUAH 1ZZIA 4G08A 4JI6H 2LTLA 4B3SH 4JI5H 2JVZA 1DTJA 4LF9H 1XMOH 4B3RH 2A1SA 2HH3A 4H8AA 2OPVA 1J5EH 1V8CA 1EC6A 2JEAI 1IBKH 2MJHA 2FMRA 5LL6b 2D9IA 4JI3H 1X0AA 4OD6A 1V9NA 2FPHX 3I0PA 2CTJA 2BA0A 2PT7G 4JVYA 2UUCH 4DR7H 3VKEA 1N32H 4LFBH 2JEBI 2JZXA 4DR5H 1HNZH 1FKAH 2ZM6H 4WANA 4FJSA 3J7AK 5FLXW
chains in the Genus database with same CATH topology
1F0XA 4DR3H 4KHPH 1IBLH 4LFAH 4AQYH 2UXDH 4X65H 3KDKA 3OETA 4JI1H 4LF4H 4DV5H 4LF8H 2LF0A 2UUBH 4K0KH 4DR2H 2UU9H 4DUZH 1N34H 2Y3MA 3J80W 1HNWH 4LF5H 4EC5A 3OTOH 4JV5H 3JAMW 4E9JA 4DV0H 1N36H 1FJGH 4B3MH 5LMUH 3RF2A 4JI4H 5DT9A 3GR5A 4X66H 4B3TH 3QD7X 3T1HH 1IBMH 2UXBH 1N33H 4DV3H 3NCVA 4DV7H 4PDBA 4DR4H 4LF7H 1XNQH 4GKJH 2E5LH 1I94H 5IT9W 1HNXH 2F4VH 4LF6H 4JI0H 4NXNH 5BR8H 1AN7A 4OX9H 2VKCA 4X64H 1XNRH 1X9ZA 1I6UA 2O4CA 5LMNH 3T1YH 3J81W 4YHHH 4DV6H 4X62H 4JI2H 4GKKH 4NZRM 4DV1H 4NXMH 2VQEH 1S03G 4OCHA 4DUYH 3FAUA 2UXCH 4DR1H 1HR0H 2VQFH 3KDGA 3OSSD 5A2QW 4JI7H 4DV2H 1SEIA 4DR6H 4NZTM 4LFCH 3GABA 2ZQEA 5IWAH 3EZJA 4B8CD 2HHHH 1ODHA 4YY3H 4JYAH 3SB1A 4DV4H 1XMQH 2UUAH 4G08A 4JI6H 4B3SH 4JI5H 4LF9H 1XMOH 4B3RH 1J5EH 1IBKH 5LL6b 2D9IA 4JI3H 4OD6A 2FPHX 2PT7G 2UUCH 4DR7H 1N32H 4LFBH 4DR5H 1HNZH 1FKAH 2ZM6H 4JI8H 3J7AK 5FLXW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OCH A;  3FAU A;  3QD7 X;  2ZQE A;  2D9I A;  4OD6 A;  2VKC A; 
#chains in the Genus database with same CATH topology
 1F0X A;  4DR3 H;  2CWH A;  1IBL H;  2Z0S A;  4LFA H;  4AQY H;  4KHP H;  4WAL A;  2K1H A;  2YQR A;  3KDK A;  2M6Q A;  4X65 H;  3OET A;  2UXD H;  4JI1 H;  4LF4 H;  2CTF A;  4DV5 H;  4LF8 H;  2LF0 A;  2UUB H;  1K1G A;  4K0K H;  4DR2 H;  2UU9 H;  2M8W A;  4DUZ H;  2Y3M A;  3J80 W;  2DGR A;  1N34 H;  4LF5 H;  1HNW H;  2OPU A;  4EC5 A;  3OTO H;  4JV5 H;  3JAM W;  4E9J A;  3AEV B;  2LTM A;  1Z2I A;  4DV0 H;  1N36 H;  1FJG H;  1KHM A;  4B3M H;  1WE8 A;  1VIH A;  3RF2 A;  5LMU H;  1S20 A;  2FFM A;  4JI4 H;  5DT9 A;  2CWF A;  3GR5 A;  4X66 H;  4OO1 G;  4B3T H;  3QD7 X;  3T1H H;  1IBM H;  2UXB H;  1WHR A;  1N33 H;  4DV3 H;  1TUA A;  4JI8 H;  3NCV A;  4DV7 H;  4PDB A;  1J5K A;  4DR4 H;  2CTE A;  4LF7 H;  2ANN A;  2AXY A;  1XNQ H;  4GKJ H;  2E5L H;  1I94 H;  5IT9 W;  2G8Y A;  2X06 A;  4BA2 I;  1HNX H;  2F4V H;  2JE6 I;  4BA1 I;  4LF6 H;  4JI0 H;  4NXN H;  3V69 A;  4IFD G;  2LRR A;  5BR8 H;  4QMF B;  1VIG A;  1AN7 A;  4OX9 H;  1WTJ A;  2VKC A;  1NXU A;  4X64 H;  1XNR H;  2NN6 G;  1X9Z A;  2CTK A;  1I6U A;  2O4C A;  5LMN H;  3T1Y H;  4NBQ A;  4YHH H;  3J81 W;  4LIJ A;  2PQU A;  4DV6 H;  4X62 H;  4JI2 H;  3UOE A;  4GKK H;  1UG8 A;  4NZR M;  2QND A;  5JEA G;  5C0X G;  4DV1 H;  4NXM H;  2E3U A;  2VQE H;  2P2R A;  1S03 G;  2BL5 A;  4AIM A;  2ANR A;  4OCH A;  4DUY H;  3FAU A;  2UXC H;  2HH2 A;  4DR1 H;  1HR0 H;  2VQF H;  1VBI A;  3KDG A;  3OSS D;  5A2Q W;  2PY9 A;  4JI7 H;  4DV2 H;  3L7Z C;  1SEI A;  4FJU A;  1XRH A;  3GKU A;  1MSZ A;  1X4M A;  1X4N A;  4DR6 H;  4NZT M;  1PQX A;  4LFC H;  2CTL A;  3GAB A;  1WVN A;  4AM3 A;  1J4W A;  1ZTG A;  2CPM A;  2ZQE A;  3U1K A;  1DT4 A;  5IWA H;  3EZJ A;  4B8T A;  4B8C D;  2HHH H;  2CTM A;  1ODH A;  2CPQ A;  2JA9 A;  1ZZK A;  4YY3 H;  1ZZJ A;  4JYA H;  3SB1 A;  4DV4 H;  5K36 G;  1XMQ H;  4JVH A;  2UUA H;  1ZZI A;  4G08 A;  4JI6 H;  2LTL A;  4B3S H;  4JI5 H;  2JVZ A;  1DTJ A;  4LF9 H;  1XMO H;  4B3R H;  2A1S A;  2HH3 A;  4H8A A;  2OPV A;  1J5E H;  1V8C A;  1EC6 A;  2JEA I;  1IBK H;  2MJH A;  2FMR A;  5LL6 b;  2D9I A;  4JI3 H;  1X0A A;  4OD6 A;  1V9N A;  2FPH X;  3I0P A;  2CTJ A;  2BA0 A;  2PT7 G;  4JVY A;  2UUC H;  4DR7 H;  3VKE A;  1N32 H;  4LFB H;  2JEB I;  2JZX A;  4DR5 H;  1HNZ H;  1FKA H;  2ZM6 H;  4WAN A;  4FJS A;  3J7A K;  5FLX W; 
#chains in the Genus database with same CATH homology
 1F0X A;  4DR3 H;  4KHP H;  1IBL H;  4LFA H;  4AQY H;  2UXD H;  4X65 H;  3KDK A;  3OET A;  4JI1 H;  4LF4 H;  4DV5 H;  4LF8 H;  2LF0 A;  2UUB H;  4K0K H;  4DR2 H;  2UU9 H;  4DUZ H;  1N34 H;  2Y3M A;  3J80 W;  1HNW H;  4LF5 H;  4EC5 A;  3OTO H;  4JV5 H;  3JAM W;  4E9J A;  4DV0 H;  1N36 H;  1FJG H;  4B3M H;  5LMU H;  3RF2 A;  4JI4 H;  5DT9 A;  3GR5 A;  4X66 H;  4B3T H;  3QD7 X;  3T1H H;  1IBM H;  2UXB H;  1N33 H;  4DV3 H;  3NCV A;  4DV7 H;  4PDB A;  4DR4 H;  4LF7 H;  1XNQ H;  4GKJ H;  2E5L H;  1I94 H;  5IT9 W;  1HNX H;  2F4V H;  4LF6 H;  4JI0 H;  4NXN H;  5BR8 H;  1AN7 A;  4OX9 H;  2VKC A;  4X64 H;  1XNR H;  1X9Z A;  1I6U A;  2O4C A;  5LMN H;  3T1Y H;  3J81 W;  4YHH H;  4DV6 H;  4X62 H;  4JI2 H;  4GKK H;  4NZR M;  4DV1 H;  4NXM H;  2VQE H;  1S03 G;  4OCH A;  4DUY H;  3FAU A;  2UXC H;  4DR1 H;  1HR0 H;  2VQF H;  3KDG A;  3OSS D;  5A2Q W;  4JI7 H;  4DV2 H;  1SEI A;  4DR6 H;  4NZT M;  4LFC H;  3GAB A;  2ZQE A;  5IWA H;  3EZJ A;  4B8C D;  2HHH H;  1ODH A;  4YY3 H;  4JYA H;  3SB1 A;  4DV4 H;  1XMQ H;  2UUA H;  4G08 A;  4JI6 H;  4B3S H;  4JI5 H;  4LF9 H;  1XMO H;  4B3R H;  1J5E H;  1IBK H;  5LL6 b;  2D9I A;  4JI3 H;  4OD6 A;  2FPH X;  2PT7 G;  2UUC H;  4DR7 H;  1N32 H;  4LFB H;  4DR5 H;  1HNZ H;  1FKA H;  2ZM6 H;  4JI8 H;  3J7A K;  5FLX W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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