4OD6 | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	82
structure length	82
Chain Sequence	RFDNELQLRGLSVEAAVEELRAAIAEARALKETPLRVVHGKGMGVLRRTLRDYLKTDKNVESFHDAEANQGGHGVTIVNVKR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Deinococcus radiodurans
publication title	Structural and functional studies of MutS2 from Deinococcus radiodurans. pubmed doi rcsb
molecule keywords	Endonuclease MutS2
total genus	29
structure length	82
sequence length	82
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2014-01-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01713	Smr	Smr domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1370.110	Alpha Beta	2-Layer Sandwich	Ribosomal Protein S8; Chain: A, domain 1	Ribosomal Protein S8; Chain: A, domain 1	4od6A00

2VKCA 2D9IA 4OCHA 3QD7X 4OD6A 3FAUA 2ZQEA
chains in the Genus database with same CATH superfamily

1NXUA 4H8AA 1ZZKA 2LRRA 1XMQH 2CTEA 2CPQA 2LTLA 1J5KA 2JE6I 1VIGA 4DV0H 1FJGH 4NBQA 4JI1H 2OPVA 4JYAH 1DT4A 2M8WA 3U1KA 5DT9A 4OCHA 1WHRA 2Y3MA 1VBIA 2CTLA 2UUAH 1FKAH 4DR3H 4DV4H 4X66H 3SB1A 2CWHA 2VKCA 2D9IA 4DUZH 4WALA 3KDGA 4LIJA 4JVHA 4AIMA 3NCVA 3FAUA 2UUCH 1IBLH 2O4CA 1MSZA 3OETA 2JZXA 4K0KH 5IWAH 4AQYH 4BA2I 1XRHA 4DV2H 4LF8H 2CPMA 4NZTM 1F0XA 1ZZJA 2PT7G 1V9NA 4JI4H 3T1YH 1X9ZA 2FMRA 5A2QW 4JI5H 1HNWH 2MJHA 1N33H 5LMNH 4JI7H 4JVYA 2UUBH 4DR1H 2YQRA 2ZQEA 5JEAG 4DV3H 5K36G 2X06A 2P2RA 2JEBI 2Z0SA 3VKEA 2JVZA 4OX9H 3KDKA 2CTFA 4DV5H 1DTJA 1HNZH 1Z2IA 4DR4H 4FJSA 4GKKH 4BA1I 4E9JA 2F4VH 1HNXH 2M6QA 4NXMH 4B3MH 3GR5A 4YHHH 3T1HH 2HHHH 1ZZIA 4LF7H 4FJUA 4B3RH 2HH3A 2ZM6H 2PQUA 3EZJA 2CTJA 4DUYH 4JI3H 4LF6H 2LTMA 4DR6H 4JI2H 4DR2H 1SEIA 2AXYA 5FLXW 2CTKA 4B3TH 4LF9H 1N32H 3RF2A 3J80W 4LFCH 4LF5H 5IT9W 3OSSD 2FFMA 1X4NA 4NZRM 3GABA 4DR7H 3J81W 4DR5H 1KHMA 5LL6b 4OO1G 2BL5A 2UU9H 4GKJH 2VQEH 1ODHA 2ANRA 1TUAA 1IBMH 4B8CD 1XNQH 2E5LH 4X65H 1S20A 2JA9A 1UG8A 3L7ZC 2K1HA 3GKUA 4PDBA 4QMFB 4JI0H 4YY3H 1S03G 4B8TA 1WTJA 2CTMA 2DGRA 4OD6A 4JI8H 1J4WA 1WVNA 2BA0A 3J7AK 1J5EH 1WE8A 2QNDA 2HH2A 3OTOH 3AEVB 2FPHX 1AN7A 3UOEA 1K1GA 1XNRH 4IFDG 2CWFA 3I0PA 1PQXA 1I6UA 4DV7H 3V69A 1HR0H 1EC6A 1V8CA 4NXNH 4EC5A 1VIHA 1N36H 4WANA 4X62H 2VQFH 2JEAI 4AM3A 5LMUH 4B3SH 4JV5H 2UXBH 4JI6H 1XMOH 2UXDH 2PY9A 5C0XG 2ANNA 1X4MA 1X0AA 4G08A 3JAMW 4LF4H 5BR8H 2UXCH 2A1SA 2OPUA 4DV1H 1IBKH 1N34H 4DV6H 4LFBH 2E3UA 2LF0A 2G8YA 4LFAH 3QD7X 4X64H 1ZTGA 1I94H 4KHPH 2NN6G
chains in the Genus database with same CATH topology

1XMQH 4DV0H 1FJGH 4JI1H 4JYAH 5DT9A 4OCHA 2Y3MA 2UUAH 1FKAH 4DR3H 4DV4H 4X66H 3SB1A 2VKCA 2D9IA 4DUZH 3KDGA 3NCVA 3FAUA 2UUCH 1IBLH 2O4CA 3OETA 4K0KH 5IWAH 4AQYH 4DV2H 4LF8H 4NZTM 1F0XA 2PT7G 4JI4H 3T1YH 1X9ZA 5A2QW 4JI5H 1HNWH 1N33H 5LMNH 4JI7H 2UUBH 4DR1H 2ZQEA 4DV3H 4OX9H 3KDKA 4DV5H 1HNZH 4DR4H 4GKKH 2F4VH 4E9JA 1HNXH 4NXMH 4B3MH 3GR5A 4YHHH 3T1HH 2HHHH 4LF7H 4B3RH 2ZM6H 3EZJA 4DUYH 4JI3H 4LF6H 4DR6H 4JI2H 4DR2H 1SEIA 5FLXW 4B3TH 4LF9H 1N32H 3RF2A 3J80W 4LFCH 4LF5H 5IT9W 3OSSD 4NZRM 3GABA 4DR7H 3J81W 4DR5H 5LL6b 2UU9H 4GKJH 2VQEH 1ODHA 1IBMH 4B8CD 1XNQH 2E5LH 4X65H 4PDBA 1S03G 4JI0H 4YY3H 4OD6A 4JI8H 3J7AK 1J5EH 3OTOH 2FPHX 1AN7A 1XNRH 1I6UA 4DV7H 1HR0H 4NXNH 4EC5A 1N36H 4X62H 2VQFH 5LMUH 4B3SH 4JV5H 2UXBH 4JI6H 1XMOH 2UXDH 3JAMW 4G08A 4LF4H 5BR8H 2UXCH 4DV1H 1IBKH 1N34H 4DV6H 4LFBH 2LF0A 4LFAH 3QD7X 4X64H 1I94H 4KHPH
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2VKC A;  2D9I A;  4OCH A;  3QD7 X;  4OD6 A;  3FAU A;  2ZQE A; 
#chains in the Genus database with same CATH topology
 1NXU A;  4H8A A;  1ZZK A;  2LRR A;  1XMQ H;  2CTE A;  2CPQ A;  2LTL A;  1J5K A;  2JE6 I;  1VIG A;  4DV0 H;  1FJG H;  4NBQ A;  4JI1 H;  2OPV A;  4JYA H;  1DT4 A;  2M8W A;  3U1K A;  5DT9 A;  4OCH A;  1WHR A;  2Y3M A;  1VBI A;  2CTL A;  2UUA H;  1FKA H;  4DR3 H;  4DV4 H;  4X66 H;  3SB1 A;  2CWH A;  2VKC A;  2D9I A;  4DUZ H;  4WAL A;  3KDG A;  4LIJ A;  4JVH A;  4AIM A;  3NCV A;  3FAU A;  2UUC H;  1IBL H;  2O4C A;  1MSZ A;  3OET A;  2JZX A;  4K0K H;  5IWA H;  4AQY H;  4BA2 I;  1XRH A;  4DV2 H;  4LF8 H;  2CPM A;  4NZT M;  1F0X A;  1ZZJ A;  2PT7 G;  1V9N A;  4JI4 H;  3T1Y H;  1X9Z A;  2FMR A;  5A2Q W;  4JI5 H;  1HNW H;  2MJH A;  1N33 H;  5LMN H;  4JI7 H;  4JVY A;  2UUB H;  4DR1 H;  2YQR A;  2ZQE A;  5JEA G;  4DV3 H;  5K36 G;  2X06 A;  2P2R A;  2JEB I;  2Z0S A;  3VKE A;  2JVZ A;  4OX9 H;  3KDK A;  2CTF A;  4DV5 H;  1DTJ A;  1HNZ H;  1Z2I A;  4DR4 H;  4FJS A;  4GKK H;  4BA1 I;  4E9J A;  2F4V H;  1HNX H;  2M6Q A;  4NXM H;  4B3M H;  3GR5 A;  4YHH H;  3T1H H;  2HHH H;  1ZZI A;  4LF7 H;  4FJU A;  4B3R H;  2HH3 A;  2ZM6 H;  2PQU A;  3EZJ A;  2CTJ A;  4DUY H;  4JI3 H;  4LF6 H;  2LTM A;  4DR6 H;  4JI2 H;  4DR2 H;  1SEI A;  2AXY A;  5FLX W;  2CTK A;  4B3T H;  4LF9 H;  1N32 H;  3RF2 A;  3J80 W;  4LFC H;  4LF5 H;  5IT9 W;  3OSS D;  2FFM A;  1X4N A;  4NZR M;  3GAB A;  4DR7 H;  3J81 W;  4DR5 H;  1KHM A;  5LL6 b;  4OO1 G;  2BL5 A;  2UU9 H;  4GKJ H;  2VQE H;  1ODH A;  2ANR A;  1TUA A;  1IBM H;  4B8C D;  1XNQ H;  2E5L H;  4X65 H;  1S20 A;  2JA9 A;  1UG8 A;  3L7Z C;  2K1H A;  3GKU A;  4PDB A;  4QMF B;  4JI0 H;  4YY3 H;  1S03 G;  4B8T A;  1WTJ A;  2CTM A;  2DGR A;  4OD6 A;  4JI8 H;  1J4W A;  1WVN A;  2BA0 A;  3J7A K;  1J5E H;  1WE8 A;  2QND A;  2HH2 A;  3OTO H;  3AEV B;  2FPH X;  1AN7 A;  3UOE A;  1K1G A;  1XNR H;  4IFD G;  2CWF A;  3I0P A;  1PQX A;  1I6U A;  4DV7 H;  3V69 A;  1HR0 H;  1EC6 A;  1V8C A;  4NXN H;  4EC5 A;  1VIH A;  1N36 H;  4WAN A;  4X62 H;  2VQF H;  2JEA I;  4AM3 A;  5LMU H;  4B3S H;  4JV5 H;  2UXB H;  4JI6 H;  1XMO H;  2UXD H;  2PY9 A;  5C0X G;  2ANN A;  1X4M A;  1X0A A;  4G08 A;  3JAM W;  4LF4 H;  5BR8 H;  2UXC H;  2A1S A;  2OPU A;  4DV1 H;  1IBK H;  1N34 H;  4DV6 H;  4LFB H;  2E3U A;  2LF0 A;  2G8Y A;  4LFA H;  3QD7 X;  4X64 H;  1ZTG A;  1I94 H;  4KHP H;  2NN6 G; 
#chains in the Genus database with same CATH homology
 1XMQ H;  4DV0 H;  1FJG H;  4JI1 H;  4JYA H;  5DT9 A;  4OCH A;  2Y3M A;  2UUA H;  1FKA H;  4DR3 H;  4DV4 H;  4X66 H;  3SB1 A;  2VKC A;  2D9I A;  4DUZ H;  3KDG A;  3NCV A;  3FAU A;  2UUC H;  1IBL H;  2O4C A;  3OET A;  4K0K H;  5IWA H;  4AQY H;  4DV2 H;  4LF8 H;  4NZT M;  1F0X A;  2PT7 G;  4JI4 H;  3T1Y H;  1X9Z A;  5A2Q W;  4JI5 H;  1HNW H;  1N33 H;  5LMN H;  4JI7 H;  2UUB H;  4DR1 H;  2ZQE A;  4DV3 H;  4OX9 H;  3KDK A;  4DV5 H;  1HNZ H;  4DR4 H;  4GKK H;  2F4V H;  4E9J A;  1HNX H;  4NXM H;  4B3M H;  3GR5 A;  4YHH H;  3T1H H;  2HHH H;  4LF7 H;  4B3R H;  2ZM6 H;  3EZJ A;  4DUY H;  4JI3 H;  4LF6 H;  4DR6 H;  4JI2 H;  4DR2 H;  1SEI A;  5FLX W;  4B3T H;  4LF9 H;  1N32 H;  3RF2 A;  3J80 W;  4LFC H;  4LF5 H;  5IT9 W;  3OSS D;  4NZR M;  3GAB A;  4DR7 H;  3J81 W;  4DR5 H;  5LL6 b;  2UU9 H;  4GKJ H;  2VQE H;  1ODH A;  1IBM H;  4B8C D;  1XNQ H;  2E5L H;  4X65 H;  4PDB A;  1S03 G;  4JI0 H;  4YY3 H;  4OD6 A;  4JI8 H;  3J7A K;  1J5E H;  3OTO H;  2FPH X;  1AN7 A;  1XNR H;  1I6U A;  4DV7 H;  1HR0 H;  4NXN H;  4EC5 A;  1N36 H;  4X62 H;  2VQF H;  5LMU H;  4B3S H;  4JV5 H;  2UXB H;  4JI6 H;  1XMO H;  2UXD H;  3JAM W;  4G08 A;  4LF4 H;  5BR8 H;  2UXC H;  4DV1 H;  1IBK H;  1N34 H;  4DV6 H;  4LFB H;  2LF0 A;  4LFA H;  3QD7 X;  4X64 H;  1I94 H;  4KHP H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4OD6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations