4QMFB

Structure of the krr1 and faf1 complex from saccharomyces cerevisiae
Total Genus 55
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
175
structure length
175
Chain Sequence
ESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKNIHPIYHIKELMIKRELAKR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast
pubmed doi rcsb
molecule tags Rna binding protein
source organism Saccharomyces cerevisiae
molecule keywords KRR1 small subunit processome component
total genus 55
structure length 175
sequence length 175
chains with identical sequence D
ec nomenclature
pdb deposition date 2014-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF17903 KH_8 Krr1 KH1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4qmfB01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4qmfB02
2HH3A 2BA0A 2E3UA 2CTKA 2CTEA 2CTFA 2Z0SA 4BA1I 3U1KA 2ANNA 2QNDA 4AM3A 4OO1G 2FMRA 2OPUA 2ANRA 3VKEA 1ZZJA 4JVHA 4QMFB 1J5KA 4JVYA 4BA2I 1K1GA 2AXYA 2P2RA 4WALA 4NBQA 2PY9A 2DGRA 1KHMA 2CTJA 1DTJA 2BL5A 1J4WA 2JVZA 3V69A 1TUAA 2CPQA 1VIHA 5JEAG 4LIJA 4IFDG 2JEBI 3L7ZC 5C0XG 2PQUA 1VIGA 4AIMA 2JEAI 1EC6A 2CTLA 2CTMA 1DT4A 4B8TA 2MJHA 2HH2A 1WE8A 2OPVA 1ZZIA 2JZXA 2YQRA 1ZTGA 1WVNA 1X4NA 1X4MA 2JE6I 5K36G 1ZZKA 3AEVB 2NN6G 2JA9A 4WANA
chains in the Genus database with same CATH superfamily
3J80W 4JI6H 4B3SH 2UXDH 2ZQEA 4JI8H 1XNQH 1HNXH 4OO1G 2F4VH 1ZZJA 4QMFB 1N36H 1X9ZA 2CWFA 3FAUA 4JI2H 4WALA 4GKJH 4YY3H 4KHPH 2M6QA 1FKAH 4LF4H 4DV4H 4DV1H 4JI3H 2JEBI 5C0XG 4X64H 1VIGA 1S20A 1V8CA 2CTMA 4DR5H 3T1HH 2MJHA 4DR6H 2UXBH 2CPMA 2OPVA 2LRRA 3GKUA 1X4MA 5A2QW 2JE6I 3OSSD 1X0AA 4JI4H 2QNDA 5K36G 2VQEH 4DR2H 2UXCH 1K1GA 2ANNA 2G8YA 4WANA 2Z0SA 2CTFA 4NZRM 4LF9H 3U1KA 2K1HA 3QD7X 4JVHA 4DV7H 4X62H 1N33H 3VKEA 4LFCH 4JVYA 3KDKA 3GABA 4LF6H 4NXMH 3OETA 4BA2I 3SB1A 2AXYA 4PDBA 2P2RA 4NXNH 1NXUA 1ODHA 1IBMH 1N34H 4NBQA 5DT9A 2UU9H 4AQYH 4JYAH 1VBIA 1DTJA 2D9IA 1HR0H 1J4WA 3V69A 1TUAA 5BR8H 1UG8A 4LIJA 2X06A 3NCVA 2ZM6H 3L7ZC 3J81W 4B8CD 4DV5H 2PQUA 1PQXA 2PT7G 1XMOH 1MSZA 2CTLA 4E9JA 2M8WA 2HH2A 4X66H 2UUAH 4K0KH 2YQRA 1J5EH 3AEVB 2HH3A 1Z2IA 4DV0H 4OD6A 1AN7A 2OPUA 1XMQH 4B3MH 4DR3H 4LFBH 1J5KA 1HNWH 4B3RH 4LF5H 2FPHX 4DV2H 2VKCA 5FLXW 2HHHH 4FJSA 3EZJA 3JAMW 2PY9A 1KHMA 1V9NA 2FFMA 3UOEA 2LTLA 1VIHA 5JEAG 2A1SA 1HNZH 4IFDG 1FJGH 4AIMA 1EC6A 4B8TA 4JI0H 4JI1H 4OX9H 1N32H 4NZTM 5LL6b 4OCHA 4DUZH 1X4NA 4LFAH 2CWHA 1SEIA 4H8AA 3T1YH 1WTJA 2BA0A 2E3UA 2CTKA 2LTMA 2CTEA 4JI7H 4X65H 4BA1I 1I6UA 4AM3A 1IBLH 2FMRA 2ANRA 1F0XA 4DUYH 5LMUH 4DR4H 1WHRA 2VQFH 5IWAH 3KDGA 2Y3MA 2LF0A 2DGRA 1XNRH 4G08A 2UUCH 2CTJA 2BL5A 4JV5H 5IT9W 2JVZA 4DR1H 5LMNH 2UUBH 2CPQA 4DR7H 1XRHA 3OTOH 4B3TH 4JI5H 1IBKH 2O4CA 4LF8H 4LF7H 4DV3H 4GKKH 2JEAI 1DT4A 1WE8A 4EC5A 4YHHH 1ZZIA 2JZXA 1ZTGA 1WVNA 3RF2A 1I94H 1S03G 4FJUA 3I0PA 1ZZKA 2E5LH 2NN6G 3GR5A 3J7AK 2JA9A 4DV6H
chains in the Genus database with same CATH topology
2HH3A 2BA0A 2E3UA 2CTKA 2CTEA 2CTFA 2Z0SA 4BA1I 3U1KA 2ANNA 2QNDA 4AM3A 4OO1G 2FMRA 2OPUA 2ANRA 3VKEA 1ZZJA 4JVHA 4QMFB 1J5KA 4JVYA 4BA2I 1K1GA 2AXYA 2P2RA 4WALA 4NBQA 2PY9A 2DGRA 1KHMA 2CTJA 1DTJA 2BL5A 1J4WA 2JVZA 3V69A 1TUAA 2CPQA 1VIHA 5JEAG 4LIJA 4IFDG 2JEBI 3L7ZC 5C0XG 2PQUA 1VIGA 4AIMA 2JEAI 1EC6A 2CTLA 2CTMA 1DT4A 4B8TA 2MJHA 2HH2A 1WE8A 2OPVA 1ZZIA 2JZXA 2YQRA 1ZTGA 1WVNA 1X4NA 1X4MA 2JE6I 5K36G 1ZZKA 3AEVB 2NN6G 2JA9A 4WANA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HH3 A;  2BA0 A;  2E3U A;  2CTK A;  2CTE A;  2CTF A;  2Z0S A;  4BA1 I;  3U1K A;  2ANN A;  2QND A;  4AM3 A;  4OO1 G;  2FMR A;  2OPU A;  2ANR A;  3VKE A;  1ZZJ A;  4JVH A;  4QMF B;  1J5K A;  4JVY A;  4BA2 I;  1K1G A;  2AXY A;  2P2R A;  4WAL A;  4NBQ A;  2PY9 A;  2DGR A;  1KHM A;  2CTJ A;  1DTJ A;  2BL5 A;  1J4W A;  2JVZ A;  3V69 A;  1TUA A;  2CPQ A;  1VIH A;  5JEA G;  4LIJ A;  4IFD G;  2JEB I;  3L7Z C;  5C0X G;  2PQU A;  1VIG A;  4AIM A;  2JEA I;  1EC6 A;  2CTL A;  2CTM A;  1DT4 A;  4B8T A;  2MJH A;  2HH2 A;  1WE8 A;  2OPV A;  1ZZI A;  2JZX A;  2YQR A;  1ZTG A;  1WVN A;  1X4N A;  1X4M A;  2JE6 I;  5K36 G;  1ZZK A;  3AEV B;  2NN6 G;  2JA9 A;  4WAN A; 
#chains in the Genus database with same CATH topology
 3J80 W;  4JI6 H;  4B3S H;  2UXD H;  2ZQE A;  4JI8 H;  1XNQ H;  1HNX H;  4OO1 G;  2F4V H;  1ZZJ A;  4QMF B;  1N36 H;  1X9Z A;  2CWF A;  3FAU A;  4JI2 H;  4WAL A;  4GKJ H;  4YY3 H;  4KHP H;  2M6Q A;  1FKA H;  4LF4 H;  4DV4 H;  4DV1 H;  4JI3 H;  2JEB I;  5C0X G;  4X64 H;  1VIG A;  1S20 A;  1V8C A;  2CTM A;  4DR5 H;  3T1H H;  2MJH A;  4DR6 H;  2UXB H;  2CPM A;  2OPV A;  2LRR A;  3GKU A;  1X4M A;  5A2Q W;  2JE6 I;  3OSS D;  1X0A A;  4JI4 H;  2QND A;  5K36 G;  2VQE H;  4DR2 H;  2UXC H;  1K1G A;  2ANN A;  2G8Y A;  4WAN A;  2Z0S A;  2CTF A;  4NZR M;  4LF9 H;  3U1K A;  2K1H A;  3QD7 X;  4JVH A;  4DV7 H;  4X62 H;  1N33 H;  3VKE A;  4LFC H;  4JVY A;  3KDK A;  3GAB A;  4LF6 H;  4NXM H;  3OET A;  4BA2 I;  3SB1 A;  2AXY A;  4PDB A;  2P2R A;  4NXN H;  1NXU A;  1ODH A;  1IBM H;  1N34 H;  4NBQ A;  5DT9 A;  2UU9 H;  4AQY H;  4JYA H;  1VBI A;  1DTJ A;  2D9I A;  1HR0 H;  1J4W A;  3V69 A;  1TUA A;  5BR8 H;  1UG8 A;  4LIJ A;  2X06 A;  3NCV A;  2ZM6 H;  3L7Z C;  3J81 W;  4B8C D;  4DV5 H;  2PQU A;  1PQX A;  2PT7 G;  1XMO H;  1MSZ A;  2CTL A;  4E9J A;  2M8W A;  2HH2 A;  4X66 H;  2UUA H;  4K0K H;  2YQR A;  1J5E H;  3AEV B;  2HH3 A;  1Z2I A;  4DV0 H;  4OD6 A;  1AN7 A;  2OPU A;  1XMQ H;  4B3M H;  4DR3 H;  4LFB H;  1J5K A;  1HNW H;  4B3R H;  4LF5 H;  2FPH X;  4DV2 H;  2VKC A;  5FLX W;  2HHH H;  4FJS A;  3EZJ A;  3JAM W;  2PY9 A;  1KHM A;  1V9N A;  2FFM A;  3UOE A;  2LTL A;  1VIH A;  5JEA G;  2A1S A;  1HNZ H;  4IFD G;  1FJG H;  4AIM A;  1EC6 A;  4B8T A;  4JI0 H;  4JI1 H;  4OX9 H;  1N32 H;  4NZT M;  5LL6 b;  4OCH A;  4DUZ H;  1X4N A;  4LFA H;  2CWH A;  1SEI A;  4H8A A;  3T1Y H;  1WTJ A;  2BA0 A;  2E3U A;  2CTK A;  2LTM A;  2CTE A;  4JI7 H;  4X65 H;  4BA1 I;  1I6U A;  4AM3 A;  1IBL H;  2FMR A;  2ANR A;  1F0X A;  4DUY H;  5LMU H;  4DR4 H;  1WHR A;  2VQF H;  5IWA H;  3KDG A;  2Y3M A;  2LF0 A;  2DGR A;  1XNR H;  4G08 A;  2UUC H;  2CTJ A;  2BL5 A;  4JV5 H;  5IT9 W;  2JVZ A;  4DR1 H;  5LMN H;  2UUB H;  2CPQ A;  4DR7 H;  1XRH A;  3OTO H;  4B3T H;  4JI5 H;  1IBK H;  2O4C A;  4LF8 H;  4LF7 H;  4DV3 H;  4GKK H;  2JEA I;  1DT4 A;  1WE8 A;  4EC5 A;  4YHH H;  1ZZI A;  2JZX A;  1ZTG A;  1WVN A;  3RF2 A;  1I94 H;  1S03 G;  4FJU A;  3I0P A;  1ZZK A;  2E5L H;  2NN6 G;  3GR5 A;  3J7A K;  2JA9 A;  4DV6 H; 
#chains in the Genus database with same CATH homology
 2HH3 A;  2BA0 A;  2E3U A;  2CTK A;  2CTE A;  2CTF A;  2Z0S A;  4BA1 I;  3U1K A;  2ANN A;  2QND A;  4AM3 A;  4OO1 G;  2FMR A;  2OPU A;  2ANR A;  3VKE A;  1ZZJ A;  4JVH A;  4QMF B;  1J5K A;  4JVY A;  4BA2 I;  1K1G A;  2AXY A;  2P2R A;  4WAL A;  4NBQ A;  2PY9 A;  2DGR A;  1KHM A;  2CTJ A;  1DTJ A;  2BL5 A;  1J4W A;  2JVZ A;  3V69 A;  1TUA A;  2CPQ A;  1VIH A;  5JEA G;  4LIJ A;  4IFD G;  2JEB I;  3L7Z C;  5C0X G;  2PQU A;  1VIG A;  4AIM A;  2JEA I;  1EC6 A;  2CTL A;  2CTM A;  1DT4 A;  4B8T A;  2MJH A;  2HH2 A;  1WE8 A;  2OPV A;  1ZZI A;  2JZX A;  2YQR A;  1ZTG A;  1WVN A;  1X4N A;  1X4M A;  2JE6 I;  5K36 G;  1ZZK A;  3AEV B;  2NN6 G;  2JA9 A;  4WAN A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...